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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR001781 | Zinc finger, LIM-type | SMART | SM00132 | LIM | coord: 373..426
e-value: 1.2E-11
score: 54.7
coord: 555..610
e-value: 1.7E-12
score: 57.5
coord: 434..488
e-value: 3.9E-5
score: 33.1
coord: 496..547
e-value: 8.7E-16
score: 68.4
coord: 278..331
e-value: 7.5E-4
score: 27.9 |
| IPR001781 | Zinc finger, LIM-type | PFAM | PF00412 | LIM | coord: 279..320
e-value: 8.5E-8
score: 32.0
coord: 556..610
e-value: 1.1E-6
score: 28.5
coord: 374..429
e-value: 8.2E-9
score: 35.2
coord: 435..493
e-value: 6.2E-8
score: 32.4
coord: 497..551
e-value: 5.2E-12
score: 45.5 |
| IPR001781 | Zinc finger, LIM-type | GENE3D | 2.10.110.10 | | coord: 495..554
e-value: 1.5E-16
score: 59.6 |
| IPR001781 | Zinc finger, LIM-type | GENE3D | 2.10.110.10 | | coord: 357..377
e-value: 9.8E-12
score: 44.5
coord: 438..494
e-value: 1.5E-13
score: 50.3
coord: 378..437
e-value: 9.1E-15
score: 54.3
coord: 278..321
e-value: 9.8E-12
score: 44.5 |
| IPR001781 | Zinc finger, LIM-type | GENE3D | 2.10.110.10 | | coord: 555..613
e-value: 9.8E-14
score: 50.6 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 556..593 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 374..409 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 435..470 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 497..530 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 279..313 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 495..554
score: 13.217 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 277..337
score: 9.672 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 372..433
score: 12.128 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 555..617
score: 9.504 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 434..494
score: 7.356 |
| IPR010442 | PET domain | PFAM | PF06297 | PET | coord: 140..234
e-value: 1.7E-19
score: 69.3 |
| IPR010442 | PET domain | PROSITE | PS51303 | PET | coord: 131..241
score: 12.396 |
| None | No IPR available | PANTHER | PTHR24205:SF0 | SUBFAMILY NOT NAMED | coord: 67..615 |
| None | No IPR available | PANTHER | PTHR24205 | FAMILY NOT NAMED | coord: 67..615 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 402..466 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 523..590 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 352..405 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 586..612 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 247..310 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 462..527 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000005693 ID=EMLSAP00000005693|Name=EMLSAP00000005693|organism=Lepeophtheirus salmonis|type=polypeptide|length=628bp
MRRSKNCSTSSNYSTTISYKPSLEEEGTSLPPPPRLIPPILTLSTPSCSS
SVTNAIPIYSDPSSVHCIKCKNCVGFVSHSWRNACSLCKCSRAFHREDIN
NTTTRFLSLDEHGEEEIGKKTYTTQRIPMMNNTSSHTISSSSNTSGGGGY
AWCPSGLTTGQIEDYMRELPPEKVPKCGGSSGEKYREEQLSLQCPKQDFA
LKYTRHVEPGLETSSYIDFIAARNNLALDVGKALEISSLKSQTLPECGKC
GNLVDLKYCINLDKLFCERHYAENFKPRCSACDELIFSGQYTKALGKDWH
CHHFCCWHCDANLTGNRYVLTGKGTTAPHXHSSSXSTTPTNNHQPLPSSR
NIFSLTDDHPCCLSCFEQNFTHVCINCEKVIGLDSKDMSYKDNHWHEGCF
VCGKCRITLVDSPFAAKESRIFCGPCYDAEFAARCDACGETFKIGHRKME
YKTRKWHDRCFKCVSCSAEVGSHSFIIPNEKDVYCLPCFEDKFATKCNKC
KKIMTTGGVTFKNEAWHRECFVCCNCNTTLTGQKFASRNDKPYCADCFGE
LFAKRCTACCKPITGAGGTRFISFEGRHWHSHCFICALCKVSMAGKGFIT
XGEDIICPDCAKEKLMGGTGAVPAPSSA back to top
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