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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 27..48 e-value: 34.0 score: 8.5 coord: 137..161 e-value: 0.15 score: 21.2 coord: 109..131 e-value: 9.6E-4 score: 28.4 coord: 167..190 e-value: 0.074 score: 22.2 coord: 82..104 e-value: 0.0088 score: 25.2 coord: 54..76 e-value: 0.046 score: 22.9 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 46..73 e-value: 3.0E-12 score: 45.4 coord: 74..106 e-value: 1.1E-12 score: 46.9 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 27..45 e-value: 1.3E-7 score: 30.8 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 109..137 e-value: 7.8E-13 score: 47.7 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 166..186 e-value: 5.7E-4 score: 19.2 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 138..165 e-value: 2.4E-11 score: 42.8 |
None | No IPR available | PFAM | PF13465 | zf-H2C2_2 | coord: 40..64 e-value: 1.3E-5 score: 25.1 coord: 153..178 e-value: 1.4E-4 score: 21.8 coord: 123..148 e-value: 1.5E-6 score: 28.0 coord: 68..93 e-value: 7.7E-8 score: 32.1 |
None | No IPR available | PANTHER | PTHR11389 | ZINC FINGER PROTEIN | coord: 31..372 |
None | No IPR available | PANTHER | PTHR11389:SF347 | METAL REGULATORY TRANSCRIPTION FACTOR 1 | coord: 31..372 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 118..176 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 48..100 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 18..63 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 139..161 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 84..104 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 111..131 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 169..190 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 56..76 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 31..53 score: 9.058 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 54..81 score: 15.189 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 137..166 score: 14.524 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 109..136 score: 16.145 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 82..109 score: 10.845 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 167..197 score: 9.12 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000006181 ID=EMLSAP00000006181|Name=EMLSAP00000006181|organism=Lepeophtheirus salmonis|type=polypeptide|length=379bp MSNETEIPLEDINQSQIHNGNVSNNKKHEGCQRSYTTLGNLKTHQRVHTG DYQYRCNSCSKAFLSSYSLKVHCRIHTKEKPFVCSICSYAFTTLYRLNAH NRLHNGTTFNCEICSKLFTTRSDLKKHSRIHTNERPFECSENGCGKSFMI SHHLKNHYKCHSKEKPFECTHCDKNFKSKYAKKIHQAKRHIHDELEEAVE EESDVDTKLPSFEQIQSLDWSNSLGDLHGFNHPENEVPHAVAXXTEHQAN ALTDYNNSVWVEEFSALMDLPRQPEACQSGILNYYDQDYRHTVIVEEPST YCIESPLNLDFNRNNAYSSESTTFQSGLSESLQLQESIAFLPPPPILYQN NPKNSSAQAVTVDEEDLMFLEMVLNLRDV back to top
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