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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000003 | Retinoid X receptor/HNF4 | PRINTS | PR00545 | RETINOIDXR | coord: 219..232 score: 46.46 coord: 379..397 score: 38.78 coord: 420..439 score: 24.16 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 151..167 score: 56.45 coord: 208..216 score: 46.85 coord: 200..208 score: 61.06 coord: 167..182 score: 59.21 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 148..219 e-value: 6.7E-34 score: 128.6 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 150..218 e-value: 1.2E-27 score: 95.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 151..177 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 148..223 score: 20.444 |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 391..406 score: 40.5 coord: 296..317 score: 35.31 coord: 448..465 score: 23.9 coord: 212..222 score: 40.89 coord: 317..333 score: 43.22 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 295..460 e-value: 1.2E-40 score: 151.0 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 290..472 e-value: 2.7E-28 score: 98.3 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 214..486 e-value: 3.5E-58 score: 196.6 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 218..254 coord: 289..485 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 149..213 e-value: 9.0E-29 score: 99.1 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 148..489 |
None | No IPR available | PANTHER | PTHR24083:SF41 | HEPATOCYTE NUCLEAR FACTOR 4-ALPHA | coord: 148..489 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 149..233 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000007361 ID=EMLSAP00000007361|Name=EMLSAP00000007361|organism=Lepeophtheirus salmonis|type=polypeptide|length=545bp MSXSLYHHIHSQHHLYXHISVXPAMRSSPSSSSSLSSNNTLLKTEXPDIP EXXHEMQPPPISTHSGAHLLVHDHNHQHSHHSQATQQQLPNIIPLVDSSH LESLPTIIQENNTSLESALEDSKSEFVLGGNEDEVIGVLPPPLAPNNIQN CAVCGDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKR NNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNSANELTVTAL LNADKVGQKSLLNSIVGGNINTNNFITEENVLANKQLASIEDIGHSMKEQ LIVLVEWAKHIKAFCELSVDDQVRLLRAHSGEHLLMGVAKRSMNLNGILL LGNDMIIVKDERKWNSESQDAAVRSIGVRVMNELVDTFKRINIDDAELAC LKAIVFFDPHVRGLHDVEQIKKLRSQIHTNLEDYINDRLYESRGRFGEIL LSIQSLQAITWQMIEQISFAKNFGVGVDSLLQEMLLGGSVYPTQQQLPID NEPHQQVLTGNSSMIIPXXXSLVDHHSLQSHNYINDQSCMTLLNN back to top
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