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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 97..107 score: 45.7 coord: 385..402 score: 41.14 coord: 268..284 score: 40.97 coord: 325..340 score: 42.0 coord: 247..268 score: 31.35 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 34..50 score: 48.57 coord: 93..101 score: 50.91 coord: 50..65 score: 52.99 coord: 85..93 score: 60.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 31..104 e-value: 6.8E-35 score: 131.9 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 33..103 e-value: 5.7E-28 score: 96.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 34..60 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 31..108 score: 19.645 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 246..397 e-value: 2.2E-24 score: 97.0 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 231..409 e-value: 6.1E-25 score: 87.4 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 32..97 e-value: 2.9E-32 score: 110.3 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 201..202 e-value: 3.5E-70 score: 235.9 coord: 98..145 e-value: 3.5E-70 score: 235.9 coord: 235..425 e-value: 3.5E-70 score: 235.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 166..171 coord: 199..425 coord: 102..116 |
None | No IPR available | PANTHER | PTHR24083:SF60 | SUBFAMILY NOT NAMED | coord: 25..428 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 25..428 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 30..117 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000007894 ID=EMLSAP00000007894|Name=EMLSAP00000007894|organism=Lepeophtheirus salmonis|type=polypeptide|length=428bp MLFQPQLHSPPHSSPEFGAKSQQTSSRILYDIPCKVCTDHSSGKHYGIFA CDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVG MNKDAVQHERGPRNSTLRRQMSLYFKEHSNNNTTTVSSESGSPRSSPPIN STLPQFQGIGGASVSSSSSPPLLFTSPHATXPGLDLSPXSKPLIXFPLPL SXPPLHHPLPPPPMPALPLPFNFFPSPYAPPTFHTSGLRNPENVSETAAR LLFMNVRWAQNVPAFTSLPYRDQLLLLEESWRELFLLSSAQFNLPVELVA SQDKSISVLSELKNFQEAIAKFQSMQVDTTEFACLRAIILFKTVLEEEKE LRDTSSITSLQDQAQLTLSKYISXAYPGQPMRFGKLLLLLPSLRSVSGNV IEELFFKKTIGPIPIERIICDMXKAGXI back to top
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