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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR004823 | TATA box binding protein associated factor (TAF) | SMART | SM00803 | TAF | coord: 745..809 e-value: 3.5E-20 score: 83.0 |
IPR004823 | TATA box binding protein associated factor (TAF) | PFAM | PF02969 | TAF | coord: 746..809 e-value: 2.3E-17 score: 62.5 |
IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 434..457 e-value: 6.8E-4 score: 28.9 coord: 185..208 e-value: 0.0092 score: 25.2 coord: 307..329 e-value: 0.005 score: 26.1 coord: 349..371 e-value: 0.11 score: 21.6 coord: 582..604 e-value: 0.48 score: 19.5 coord: 157..179 e-value: 0.068 score: 22.3 coord: 406..428 e-value: 0.048 score: 22.8 coord: 128..151 e-value: 0.011 score: 24.9 coord: 378..400 e-value: 0.016 score: 24.4 coord: 468..490 e-value: 0.011 score: 25.0 coord: 496..518 e-value: 0.0049 score: 26.1 coord: 278..301 e-value: 0.013 score: 24.6 coord: 610..632 e-value: 0.007 score: 25.6 coord: 221..243 e-value: 0.21 score: 20.6 coord: 554..576 e-value: 0.12 score: 21.4 coord: 524..546 e-value: 0.0078 score: 25.4 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 349..380 e-value: 1.9E-4 score: 20.9 coord: 157..185 e-value: 1.3E-8 score: 34.2 coord: 552..582 e-value: 1.4E-7 score: 31.0 coord: 466..497 e-value: 7.6E-7 score: 28.6 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 381..398 e-value: 2.7E-5 score: 23.4 coord: 186..204 e-value: 1.1E-5 score: 24.6 coord: 583..601 e-value: 2.3E-4 score: 20.4 coord: 275..301 e-value: 3.7E-5 score: 23.0 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 127..153 e-value: 4.8E-5 score: 22.5 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 602..632 e-value: 2.9E-6 score: 26.3 coord: 399..424 e-value: 2.4E-6 score: 26.5 coord: 517..550 e-value: 3.8E-14 score: 51.5 coord: 425..455 e-value: 3.7E-10 score: 38.7 coord: 302..331 e-value: 5.1E-7 score: 28.7 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 498..516 e-value: 4.2E-12 score: 45.2 |
IPR011442 | Domain of unknown function DUF1546 | PFAM | PF07571 | DUF1546 | coord: 1014..1081 e-value: 2.0E-7 score: 30.8 |
IPR007087 | Zinc finger, C2H2 | PFAM | PF00096 | zf-C2H2 | coord: 309..329 e-value: 7.0E-5 score: 22.8 coord: 610..632 e-value: 0.0051 score: 16.9 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 498..518 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 309..329 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 223..243 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 380..400 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 436..457 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 526..546 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 280..301 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 584..604 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 556..576 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 187..208 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 470..490 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 351..371 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 408..428 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 612..632 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 159..179 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 130..151 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 610..632 score: 10.72 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 378..405 score: 12.799 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 524..551 score: 15.396 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 582..609 score: 11.344 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 128..156 score: 11.801 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 157..184 score: 12.05 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 468..495 score: 12.009 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 434..462 score: 11.863 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 496..523 score: 16.082 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 307..334 score: 11.177 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 185..213 score: 10.45 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 278..306 score: 12.528 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 554..581 score: 12.113 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 406..433 score: 11.988 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 349..376 score: 11.697 |
None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 349..371 e-value: 0.51 score: 10.6 coord: 128..151 e-value: 5.9E-4 score: 19.8 coord: 278..298 e-value: 1.3 score: 9.4 |
None | No IPR available | PFAM | PF13465 | zf-H2C2_2 | coord: 420..444 e-value: 4.4E-5 score: 23.4 coord: 510..533 e-value: 1.8E-4 score: 21.5 coord: 538..565 e-value: 7.4E-6 score: 25.8 coord: 392..415 e-value: 4.1E-4 score: 20.3 coord: 482..505 e-value: 1.2E-5 score: 25.2 coord: 172..195 e-value: 1.2E-6 score: 28.3 coord: 568..592 e-value: 2.4E-5 score: 24.3 |
None | No IPR available | PANTHER | PTHR24409 | FAMILY NOT NAMED | coord: 128..632 |
None | No IPR available | PANTHER | PTHR24409:SF0 | SUBFAMILY NOT NAMED | coord: 128..632 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 126..162 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 359..413 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 518..572 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 477..533 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 276..329 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 157..204 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 400..452 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 576..628 |
IPR009072 | Histone-fold | GENE3D | 1.10.20.10 | | coord: 742..810 e-value: 7.7E-21 score: 73.4 |
IPR009072 | Histone-fold | SUPERFAMILY | 47113 | Histone-fold | coord: 745..810 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008067 ID=EMLSAP00000008067|Name=EMLSAP00000008067|organism=Lepeophtheirus salmonis|type=polypeptide|length=1386bp MSLYEEDAMGCEENHFVLQGRRLLSDIQLLLLKERDSDSFYKDLMIISGD GVPFSTSAFLLGSVSKSIKHALLQGGELIYLPDVSSSELRIFLNKFLEPQ HSKADSKVIFSVGCLLGIDFPSSEPSVFPCPHCSKKFTLNKLLSRHLRVV HSTNPEYQCLICLHRCRSKSELTIHVRIHTKEKPYPCHICSKFFAQTSQL NDHLINVHNESITPTKKGCSNVCEICGLKLGSRVAVRRHIKIHQKPDVKE MSDIEDEEEDEDEDDEEELLGDEEKKSFECIFCKKRFSQKSHLSVHEQGT HQGLRHNMCPYCGKTFSAASNMKKHLLIHNQQSDSNEDGKSSTEQQFKHV CEYCGRLYDNLHYLRIHVKTHSTEAPLFPCEECHEKFSSISALKIHQKFH KGETQFTCTVCRRTCLSKSALETHSLIHTGYKPHQCDQCDRRFTQKSQLN YHLKTVHASIHENKPKTHFCSFCDKGFFTSSALNKHTKTHNQERNFKCVE CGKAFIQKAHLKTHLLQHSGERPFVCVTCGKSFFTHSNLKEHSKIHTGEK KKYYECSACPATYVNASDLKIHTLKHSGESPFSCDFCKKTFRSKRHLGYH ICTHIGMKRFQCKNCNKSFTSPSGLRQHFSHHDTCHQTASEGAYTIKKVV ESGESHSTQVNHPIIYASQGEQNVLMDFSQDTLSEQTHLFSDVVNHDPML VSGPDEEEETLSLSLPVISKINMNSIDGSNNIKKEDTDSEERRFVQIPPE TVGLVGETLGITNIPESITRSLSEDASYRCREVVHYCTQFLRHGKRRKLT TNDFNRALRWYDVSPIFGQGSETCPNFIRIPEAEIFIPDEEKPINLTNYS LSNTSHEIGEDPIIKGFWLSIEGTQLPIDSEDNKPIEHPQPNHITPTLLQ YYTSVTNIILGNSEEMLRIILDDLKTNSKISTLLPYFVTFIRNTLQKHCD NRIITGRLLYFLQSLFSNEYLNLSPKPYLSHLVTGLLSSLIIERRSREIS EIDKLTLKIEHVPLASRILRGVLDRWATPVNLLRSQTLRALREYLKDTKL SYSSQYGALSALIALGPEVLEDTLVPLMNNYYLSLESKFESSRSNIRSVS LYEKERQVLVHMMGQILTASRIIIHHRSSNPELKPVIISKVPIKDEIKKE PGTVSNHTHGSSVTINEISTSLLDVYNSAYNNFGDSLCIIPLCPAYKVKH EHNALHITNQKVKFCIRKCGNLLKFDGFSSKNHDSTMTMVSKELEDPTPS DNIFSTSQNFDHLAHMGVPSDIFDETSNDGFIDTSSTQNNGLNSEDITDS SRTPVSQSVQNEFEVSSKYIVVQYPKISFYYGRPWEQLKRKSFEHLREDT KTKRNCFIGKKLGGTFYTEEQRRLILLHSCSLYTTI back to top
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