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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 135..156 |
None | No IPR available | PANTHER | PTHR24082 | NUCLEAR HORMONE RECEPTOR | coord: 9..465 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 62..148 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 80..95 score: 44.3 coord: 113..121 score: 55.91 coord: 63..79 score: 23.16 coord: 121..129 score: 57.25 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 60..132 e-value: 8.4E-27 score: 105.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 62..130 e-value: 3.0E-21 score: 75.3 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 63..90 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 60..136 score: 18.249 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 274..472 e-value: 5.6E-20 score: 71.4 coord: 118..175 e-value: 5.6E-20 score: 71.4 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 274..471 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 63..117 e-value: 3.6E-20 score: 71.9 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008261 ID=EMLSAP00000008261|Name=EMLSAP00000008261|organism=Lepeophtheirus salmonis|type=polypeptide|length=476bp MNMSRVLENIHFNYSTEDMIKGPINSSSSSSPECLQSNMFFTSETMRTRT YKKRAKFIRKVTCHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHC SRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLK KLKAQQLLDPENGVKKSSFTPEWDKMLFQNNSNMHNMGNSTYDMSFSIFS KKNTLNTFSEEYRNCYGHYRTSHIIQDCFDSGMSFNKMEIHLVQEMLYWE IESRKKIPLNSVNMKSFMEYSQLNEPIPFEISLSGYNTCVQRITMFMTKI NFFAALSPEDQKKLLLNNVDMVVNIKTARYLHPNNNITEQFEIINGKNNS EKSCTTSPATSNNVYYQEIFKNPWCSSFEDKTQYKALMKAIFDLEMDEIT IILLIGLTIFSTTNCVDLDNINLIMRFQDVFSHLLYKYLCSTIGNSSTFL LFPKYINILAQLEEMAKTILNKRLPF back to top
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