EMLSAP00000009473, EMLSAP00000009473 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000009473
Unique NameEMLSAP00000009473
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length475
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPRINTSPR00261LDLRECEPTORcoord: 76..97
score: 57.65
coord: 36..57
score: 50.67
coord: 256..277
score: 40.47
coord: 304..325
score: 32.93
coord: 214..235
score: 49.33
coord: 121..142
score: 50.67
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLacoord: 25..62
e-value: 1.1E-12
score: 58.2
coord: 202..242
e-value: 1.0E-12
score: 58.3
coord: 290..332
e-value: 1.6E-7
score: 41.0
coord: 245..282
e-value: 2.2E-8
score: 43.9
coord: 110..147
e-value: 4.4E-14
score: 62.8
coord: 65..104
e-value: 1.0E-6
score: 38.3
coord: 149..187
e-value: 7.8E-14
score: 62.0
IPR002172Low-density lipoprotein (LDL) receptor class A repeatGENE3D4.10.400.10coord: 109..146
e-value: 3.1E-14
score: 52.1
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 64..99
e-value: 9.7E-9
score: 34.8
coord: 245..280
e-value: 1.4E-9
score: 37.5
coord: 110..145
e-value: 4.1E-13
score: 48.8
coord: 25..60
e-value: 3.4E-12
score: 45.9
coord: 150..185
e-value: 1.3E-10
score: 40.8
coord: 202..240
e-value: 8.4E-11
score: 41.4
IPR002172Low-density lipoprotein (LDL) receptor class A repeatGENE3D4.10.400.10coord: 202..240
e-value: 1.4E-12
score: 46.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatGENE3D4.10.400.10coord: 66..97
e-value: 1.2E-10
score: 40.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatGENE3D4.10.400.10coord: 153..187
e-value: 5.6E-13
score: 48.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatGENE3D4.10.400.10coord: 245..280
e-value: 3.1E-11
score: 42.4
coord: 26..61
e-value: 4.5E-15
score: 54.7
coord: 294..330
e-value: 1.0E-5
score: 24.8
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 110..146
score: 14.087
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 290..331
score: 10.225
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 202..241
score: 12.9
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 149..186
score: 13.912
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 65..103
score: 13.262
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 25..61
score: 13.387
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 245..281
score: 12.563
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 149..186
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 64..102
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 108..145
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 25..61
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 295..328
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 244..281
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 201..236
IPR000742Epidermal growth factor-like domainSMARTSM00181EGFcoord: 374..411
e-value: 0.084
score: 22.0
coord: 334..370
e-value: 3.8E-5
score: 33.1
coord: 25..61
e-value: 250.0
score: 0.1
IPR000742Epidermal growth factor-like domainPROSITEPS50026EGF_3coord: 331..370
score: 8.23
IPR000742Epidermal growth factor-like domainPROSITEPS50026EGF_3coord: 371..406
score: 7.267
IPR001881EGF-like calcium-binding domainSMARTSM00179EGF_CAcoord: 371..411
e-value: 2.8E-8
score: 43.5
coord: 331..370
e-value: 2.4E-8
score: 43.8
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 371..410
e-value: 1.8E-5
score: 24.5
NoneNo IPR availablePFAMPF14670FXa_inhibitioncoord: 335..369
e-value: 1.7E-8
score: 34.3
NoneNo IPR availableGENE3D2.10.25.10coord: 331..373
e-value: 2.5E-13
score: 49.4
NoneNo IPR availableGENE3D2.10.25.10coord: 374..411
e-value: 1.2E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR10529:SF151SUBFAMILY NOT NAMEDcoord: 24..471
NoneNo IPR availablePANTHERPTHR10529LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDcoord: 24..471
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.606
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 330..377
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 371..411
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 417..472
e-value: 3.1E-8
score: 32.5
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 355..369
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 346..357
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 385..396
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 306..330
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 123..145
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 163..185
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 216..240
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 38..60
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 78..102
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 331..355
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 371..394

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000009473 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000009473EMLSAT00000009473-705320Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000009473 ID=EMLSAP00000009473|Name=EMLSAP00000009473|organism=Lepeophtheirus salmonis|type=polypeptide|length=475bp
MIRFSTYLLFFHVFIYETGVSQGSHCLTTKFECDNKQCIPQSWRCNGLDD
CMDNSDEVNCIVKSNCTDSEFRCDEIRCVPKNWQCDGGEDCIDGSDENED
ICSNQTCDRTCISNEFTCDNSKCIQNRWVCDQEDDCGDGSDEKSCPDMSC
NADNEFSCGDGYCIKKYWRCDGDVDCPDASDERDCPEISSSGNFSDENII
VKCKDTEFQCLSRNHCIHRTWLCDKDTDCPDGSDESVQQCGTRNKCRTDQ
FKCVNGDCIPGHLQCSGAPECIDNSDEENCNFANGESSLGCDADKEFDCV
GDGRMCVPLEQVCDKMNNCGNWADESHEKCNINECKTNNGGCDQTCIDLP
IGYKCGCKSGYHLTSNHTCEDVDDCLTPGTCSQICYNRPGTFKCDCLEGY
SRDLRDSTRCKANEGHPSLLFAHKVDIRKISLDRNDMTSIVNSTRSSCAL
DFVFRTGMIFWSDEVTQKIYKYVER
back to top
Add to Basket