EMLSAP00000010026, EMLSAP00000010026 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000010026
Unique NameEMLSAP00000010026
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length1079
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 136..436
e-value: 2.6E-33
score: 114.5
coord: 39..119
e-value: 5.8E-17
score: 61.1
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3D2.40.270.10coord: 765..779
e-value: 7.2E-64
score: 214.8
coord: 912..1044
e-value: 7.2E-64
score: 214.8
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 693..1066
e-value: 1.1E-127
score: 425.8
NoneNo IPR availableGENE3D3.90.1100.10coord: 689..764
e-value: 6.4E-102
score: 340.7
coord: 369..528
e-value: 6.4E-102
score: 340.7
coord: 32..185
e-value: 6.4E-102
score: 340.7
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT 2coord: 2..1077
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 18..1077
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 552..615
e-value: 3.2E-29
score: 100.4
IPR007642RNA polymerase Rpb2, domain 2GENE3D3.90.1110.10coord: 188..368
e-value: 2.1E-66
score: 222.2
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 186..379
e-value: 1.4E-50
score: 171.2
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 780..911
e-value: 5.6E-45
score: 152.3
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 638..687
e-value: 2.9E-18
score: 65.4
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 453..518
e-value: 4.1E-22
score: 77.6
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..1077
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 918..930

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000010026 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000010026EMLSAT00000010026-705873Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000010026 ID=EMLSAP00000010026|Name=EMLSAP00000010026|organism=Lepeophtheirus salmonis|type=polypeptide|length=1079bp
MYDQEEEFYDQDEDSEVIPNEIWQEACWIVISAYFEEKGLVRQQLDSFDE
FIQMNVQRIVEDFPQIDLQGEPNYSHGEMEAPPRYLLKFEQIYLSKPTHW
EKDGAPSPMMPNEARLRNXXHLLCSTLCGYYQDYRKIPIMLRSTYCLLSG
MTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSVKDSKY
AYKTEIRSCLEHSSRPTSTLWVNMLTRGGQNIKKSAIGQRIVGILPYIKQ
EIPIMIVFRALGFVAXRDILEHIIYDFDDPELMEMVKPSLDEAFVIQEQN
IALNFIGTRGAQPGVTREKRIKYAKEILQKEMLPHVGVSDFCETRKAYFL
GYMVHRLLLAALGRKELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEM
RMYAQKFIDKGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQSRAG
VSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETP
EGGAVGLVKNLALMAYVSVGNTPSPILEFLEEWSMENLEEIAPSSISDAT
KIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIINAEVSMIRDIRDREIRIY
TDAGRICRPLLIVEDCRLLMNKQHIEMLKEREYNNYQWQDLVASGVVEYI
DTMEEETTMIATSPESLQPAEDGTFYCQTWTHCEIHPAMILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS
MDYLRFSELPAGINSIVAIATYTGYNQEDSVILNSSAVDRGFFRSVFMRS
YKDSELKRNDQEECFEKPSRDTCQGMRNAIYDKLDDDGIIAPGLRVSGDD
VVIGKTITLQENDDELEGKTQRFTKRDSSTFLRNSETGIVDQVMITLNSD
ANKFVKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGISPD
IIINPHAIPSRMTIGHLIECLQGKLGANKGEVGDATPFNDAVDVQKISKL
LSEYNYQPRGNEVMYNGHTGRKMNAQIFLGPTYYQRLKHMVDDKIHSRAR
GPLQILVRQPMEGRARDGGLRFGEMERGN
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