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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PRINTS | PR00261 | LDLRECEPTOR | coord: 128..149 score: 48.45 coord: 232..253 score: 49.22 coord: 39..60 score: 48.67 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa | coord: 115..156 e-value: 2.3E-6 score: 37.1 coord: 27..65 e-value: 7.9E-12 score: 55.3 coord: 222..260 e-value: 1.2E-7 score: 41.4 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | GENE3D | 4.10.400.10 | | coord: 26..63 e-value: 3.1E-12 score: 45.7 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | GENE3D | 4.10.400.10 | | coord: 222..259 e-value: 7.0E-11 score: 41.2 coord: 114..154 e-value: 8.4E-8 score: 31.3 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PFAM | PF00057 | Ldl_recept_a | coord: 27..63 e-value: 4.3E-9 score: 35.9 coord: 115..149 e-value: 1.2E-5 score: 24.9 coord: 223..258 e-value: 2.1E-7 score: 30.5 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 222..259 score: 11.988 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 27..64 score: 12.688 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 115..155 score: 10.925 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 116..154 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 27..63 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 217..256 |
None | No IPR available | PANTHER | PTHR10529 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED | coord: 28..253 |
None | No IPR available | SIGNALP_EUK | SignalP-noTM | SignalP-noTM | coord: 1..24 score: 0.609 |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 234..258 |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 41..63 |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 130..154 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011448 ID=EMLSAP00000011448|Name=EMLSAP00000011448|organism=Lepeophtheirus salmonis|type=polypeptide|length=264bp MLISFGRLFIVFNCILIQERIISASTTCNSDNEFKCHNGICIPKYHVCDG ISHCRDSSDENFCLQEKRSRSDNEGVVSIIASFRDSFRNFVRDIMKEVGT LLRRKKSDGGAETVECKSNDAFFCSVDNICISLSARCDTKDDCSDGEDEN PNICDFLGGSSLRRSTNKKSIQENGEKLVPLPDIVTLGKSRRTMSVIPRL SSDNSKSSSFSSSHETRTVKVICNSRQFACDNTCIPLSWVCDDLEDCIDK TDENQEKCKSKKEK back to top
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