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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003591 | Leucine-rich repeat, typical subtype | SMART | SM00369 | LRR_TYP | coord: 826..849
e-value: 21.0
score: 10.7
coord: 850..873
e-value: 6.3
score: 14.9
coord: 734..755
e-value: 21.0
score: 10.6
coord: 874..897
e-value: 3.5
score: 16.6
coord: 756..779
e-value: 190.0
score: 2.8
coord: 900..921
e-value: 60.0
score: 6.9
coord: 802..825
e-value: 11.0
score: 13.1
coord: 988..1011
e-value: 1.4
score: 17.9 |
| None | No IPR available | SMART | SM00365 | LRR_SD22 | coord: 850..871
e-value: 160.0
score: 5.7
coord: 988..1011
e-value: 300.0
score: 3.5
coord: 732..758
e-value: 400.0
score: 2.5
coord: 898..924
e-value: 280.0
score: 3.8
coord: 945..965
e-value: 30.0
score: 11.7
coord: 439..458
e-value: 570.0
score: 1.2 |
| None | No IPR available | GENE3D | 3.80.10.10 | | coord: 674..687
e-value: 2.0E-8
score: 33.0
coord: 787..861
e-value: 2.0E-16
score: 58.9
coord: 956..1084
e-value: 2.0E-17
score: 62.2
coord: 862..955
e-value: 9.6E-19
score: 66.4
coord: 732..786
e-value: 2.0E-8
score: 33.0 |
| None | No IPR available | PFAM | PF13855 | LRR_8 | coord: 827..885
e-value: 2.3E-12
score: 46.3 |
| None | No IPR available | PANTHER | PTHR22841 | FAMILY NOT NAMED | coord: 40..587 |
| None | No IPR available | PANTHER | PTHR22841:SF4 | GB DEF: MKIAA1988 PROTEIN (FRAGMENT) | coord: 40..587 |
| None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 709..1062 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 341..379
e-value: 350.0
score: 0.9
coord: 223..262
e-value: 36.0
score: 7.2
coord: 182..220
e-value: 4.2
score: 13.1
coord: 93..128
e-value: 56.0
score: 5.9
coord: 134..173
e-value: 0.11
score: 21.6 |
| IPR001611 | Leucine-rich repeat | PFAM | PF00560 | LRR_1 | coord: 805..824
e-value: 0.1
score: 12.6
coord: 734..756
e-value: 0.22
score: 11.5 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 758..779
score: 5.263 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 924..945
score: 6.626 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 828..849
score: 7.735 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 804..825
score: 6.395 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 852..873
score: 6.149 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 1012..1033
score: 4.986 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 734..755
score: 6.572 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 900..921
score: 6.187 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 969..989
score: 5.918 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 876..897
score: 5.887 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 990..1011
score: 6.788 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 947..967
score: 6.033 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 117..261
e-value: 1.8E-33
score: 115.1
coord: 317..516
e-value: 1.8E-33
score: 115.1 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 37..116
e-value: 6.5E-5
score: 21.1 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 141..271
score: 12.077 |
| IPR011047 | Quinonprotein alcohol dehydrogenase-like superfamily | SUPERFAMILY | 50998 | Quinoprotein alcohol dehydrogenase-like | coord: 441..533
coord: 43..311
coord: 350..389 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011562 ID=EMLSAP00000011562|Name=EMLSAP00000011562|organism=Lepeophtheirus salmonis|type=polypeptide|length=1092bp
PRAAHGLCLNHSGELLALARTRHDVNGREEVAGNEEEAWIEIWNLRGGAP
FFQRWLPTGXSSLEAIAFGAKGRMYSTGLHGYILSHDIQSGAVSKSPVSW
GASWCLDYHPLSKRIAVGTEEGVVCIFREESSGEIVYEKSLDKQEGRILS
LAWEPLSGDKMVTGSTDTLRVWDTKTGHPLHRLSTAXTFKGRETTVWSVA
YLDNEVIISGDSRGKTSFWNGKTGTLLDSYQTHKADVLTVGVDRKQKIAY
STGVDPVVMYFQPILHKDGRSKWIKSIHRTVNQHDNRSIMPIGPKTIALT
GIDSYLTLIDNSLELWKLGETKDNLKNSLEVGNILEMGQNPVNLLKIENN
DGRTIWCSDISDSGNFLAYAVQNSCRFYSLSVSPDEKVSPQLKRIKSQDK
FSDTHHIKFIPNSNKCLLINNVGKLILLSILEEEDGMSLHKLKQIEQNQI
KLTSSISKFDIEGEYIVLADFDDNVVVVNYETGDLVSHLPRYNHAPVSTV
SISLHKTLVFITYSNGIVVECSVKSGKYTSFSNNFFTFDANNIIYSNDLR
RTIRGAFYDPQNEDKIIMYDSSAVHIIDKCKVLENEKCDVKKLRTLGKSS
KIKHISTDESVGFSIKTINNFDNLLFFTRIEKGVVAVEFLFLCVFIIFNM
LIANSVTSEICGDDPLCSAIDHLHNRISSMEQPVWQKSLQKSSWKRCDEG
KCSCEPPKISGTVDCWGKFHKLDRIPEDQIIPLNVEILDLGNNHIPHLNP
NIFKNLIKLKELNLFGMGLKHLSAFIFETNFQIKTLXDNMLRILEPNLLS
SIHLLEYLDISGNMFEKLPDHIFKATPRLKMLNLSNNKIKVISPMLLSNL
TILEVLDLSQNRLRVLDMRSFIDLIRLNKLFMSRNIIETLPEDLFKNNMK
LKSIDLSINELQRLPPTLYENIEDLKYLFLAGNKFQSLNDENRFPKTLHH
LDMSNNVISICNISGFDYQWVYLDLSNNAIKNFSLTSLKSLKTLRLNLNQ
ITHLKFEDFSNSINELYLHRNLIETFNKDRSFEHLNSLVKLTIRDNYWTC
DCKIGSLVKWLNQFGINYDSTLCEAPADFFGMHINSTIALQC back to top
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