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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 406..427 |
| None | No IPR available | PFAM | PF13893 | RRM_5 | coord: 483..540
e-value: 7.8E-7
score: 28.7 |
| None | No IPR available | PANTHER | PTHR24011 | FAMILY NOT NAMED | coord: 65..546 |
| None | No IPR available | PANTHER | PTHR24011:SF51 | SUBFAMILY NOT NAMED | coord: 65..546 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 91..174 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 194..282
coord: 462..545 |
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | RRM | coord: 461..543
e-value: 0.0092
score: 24.7
coord: 98..171
e-value: 2.5E-23
score: 93.5
coord: 195..268
e-value: 3.1E-19
score: 79.9 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 99..169
e-value: 2.7E-18
score: 65.2
coord: 196..265
e-value: 8.8E-14
score: 50.7 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 460..547
score: 9.849 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 97..175
score: 17.046 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 194..272
score: 16.193 |
| IPR003954 | RNA recognition motif domain, eukaryote | SMART | SM00361 | RRM_1 | coord: 461..543
e-value: 4.6E-12
score: 56.1
coord: 98..171
e-value: 0.84
score: 14.9 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 97..176
e-value: 4.6E-23
score: 80.9 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 188..280
e-value: 4.2E-20
score: 71.3 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 461..545
e-value: 2.1E-21
score: 75.0 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011735 ID=EMLSAP00000011735|Name=EMLSAP00000011735|organism=Lepeophtheirus salmonis|type=polypeptide|length=557bp
MIPPPEEGYRPDPITDLDQTGHLISGPGARKDVGGRSNSHSLSSTGKLSS
DQYLAVQKAKKYAMEQSIKMVLMKQXLAHQXAXAKTLQRHQAIVLMCRVY
VGSINFEVKEDTIKQAFLPFGPIRSISMSWDPITQKHKGFAFVEYEMPEA
AQLSLEQMNGVIISGRNIKVGRPSNXPQXXAVIDDITEEAKKYNRIYVAS
IHQDLSEEDIKSVFEAFGSIKFCELTMSSVPGRHKGYGFIEYDTLQSAQD
AIGSMNLFDLGGQYLRVGRAITPPDTKKQGPPSAVPXXXPTAAXXXAAAA
TAKIQAMDAVANNLGLTSDDIINRQQQQSNPSTQAPPAPSITTAPPEVVE
SIIPPVQTVSETTPVSAPQPPISFASSLPPPGVANLSSXGGSVVSTTVPM
NDPKAKKEAAQRKQQEELQKKLMEGQEPSTLQQQENISIKGQSARHLVMQ
KLMRNSRESVVVLLKNMVNASEVDDELEEEIQDECSKFGEVSRVIIYQEK
QSEEDDAEIIVKIFVEFKDHSSAKRAKDSLGGRFFGGKIVVAEIYDQDLY
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