EMLSAP00000011971, EMLSAP00000011971 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000011971
Unique NameEMLSAP00000011971
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length427
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 142..156
score: 47.9
coord: 62..78
score: 35.75
coord: 217..229
score: 28.96
coord: 96..107
score: 47.78
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 4..290
e-value: 3.0E-117
score: 389.9
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 2..418
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 395..415
score: 52.04
coord: 226..246
score: 54.61
coord: 252..273
score: 55.95
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 12..222
e-value: 7.3E-51
score: 172.2
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 11..222
e-value: 2.2E-58
score: 196.6
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 11..222
NoneNo IPR availableGENE3D1.20.58.390coord: 387..416
e-value: 2.1E-6
score: 27.1
coord: 223..291
e-value: 5.6E-30
score: 103.3
NoneNo IPR availablePANTHERPTHR18945:SF320SUBFAMILY NOT NAMEDcoord: 2..418
NoneNo IPR availableTMHMMTMhelixcoord: 394..416
NoneNo IPR availableTMHMMTMhelixcoord: 225..247
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 230..289
e-value: 1.3E-22
score: 80.7
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 225..417
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 142..156

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000011971 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000011971EMLSAT00000011971-707818Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000011971 ID=EMLSAP00000011971|Name=EMLSAP00000011971|organism=Lepeophtheirus salmonis|type=polypeptide|length=427bp
SRIEKINYRQKEKQVLDSILGTGYDKRIRPSGKNDTDGPATINVNIYLRT
ISRIDDVKMEYSVQVTFREQWNDERLRYYDDTHGHLKYLTLTDPTKVWMP
DTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYP
LDKQVCVLQIASYGWAKDDLIYLWKEKDPVQVVPGLHLPRFTLEQYKSAY
CDVTTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQN
AIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAIDVWTGKKRNSEYRN
NIRVDPXGDLVYKSTTSYPHQYNSMYPHHNILSGGPPNSYNSATPCEIHX
PVEHLQAYANSRNGEIDEKNCNWYCCKTRGLLAKFPSRAKRIDVISRFIF
PLIFAIFNLAYWLYYLFAKSKSPQLES
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