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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003070 | Orphan nuclear receptor | PRINTS | PR01284 | NUCLEARECPTR | coord: 506..522 score: 60.96 coord: 606..626 score: 54.98 coord: 627..642 score: 43.75 coord: 481..496 score: 100.0 coord: 676..693 score: 57.58 coord: 730..751 score: 49.17 coord: 709..729 score: 60.17 |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 648..663 score: 28.28 coord: 709..726 score: 34.12 coord: 582..598 score: 32.81 coord: 470..480 score: 54.26 coord: 561..582 score: 24.85 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 466..474 score: 65.24 coord: 409..425 score: 51.38 coord: 425..440 score: 64.08 coord: 458..466 score: 62.59 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 406..477 e-value: 7.6E-39 score: 145.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 408..476 e-value: 1.0E-30 score: 105.6 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 409..435 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 406..481 score: 19.89 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 560..721 e-value: 2.1E-25 score: 100.4 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 553..730 e-value: 3.8E-22 score: 78.2 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 471..749 e-value: 1.1E-65 score: 221.2 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 480..750 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 408..470 e-value: 1.4E-30 score: 104.9 |
None | No IPR available | PANTHER | PTHR24085 | NUCLEAR HORMONE RECEPTOR | coord: 266..753 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 407..485 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000013004 ID=EMLSAP00000013004|Name=EMLSAP00000013004|organism=Lepeophtheirus salmonis|type=polypeptide|length=753bp MLLLQHQQQSIHHHHNIHHSSSSNINASTHGSQQTSAQQQSNFGSSSSGS SATFADVLSSSYGISLTDYGDEGDLNPGSSHHGLIESLGGNYGSANPALG HHPQQQVAPAAQHHHHPGHHPQQQQHHHHHGESSYESYDSIPNTFHGEFI TQPIDYQGARGRSSPPTGPLVPPPSSSSNAGSPVTHSPGPIIVPSSPSHL LPSFLDTYNRQQYEQQQQQQAQQQHQQVVGVPQPTTLEPRYPFKTELPEA KPICSTFPPPPPSCSSPSSTPTTSSSAFTSSPYQTGGGSNFLLKKEPIYT CTTAFVPNIAPNSPYQSNSSTNYYHSPSSPSYFSSSSANNTASGSSNNPP TNNFDRPIVARKTSAPRASTSTSQGSGDAVSKLSIRVPLGPPPPSLSSEC SPNKASLLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLADKN CPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPTE SPPSPPVSLITALVRAHIDTSPDMNNLDYSQFVETSIEDERDSKENMLAN EAIKIGQFYHVLTSSIEVIRNFCERIPGISELSLNDRDLLFQTSCLELFV LRLAYRSNPDSDRYTFCNGVVLHVSQCEQTFGDWLNGINEFARGLHSMEL DISAFSCLCGLILVNGKDERHGLSDPKKVESIENKIINSLKDHVTYNPEA QKKEHYMTRILDRLPALRSLSMQGLQRIFFLKWEDLVPAPPLIEKMFASS IPF back to top
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