gaba-alpha subunit, maker-scaffold1004_size71882-snap-gene-0.10 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000009047 (supercontig:LSalAtl2s:LSalAtl2s566:676793:679625:-1 gene:EMLSAG00000009047 transcript:EMLSAT00000009047 description:"maker-LSalAtl2s566-snap-gene-5.58") HSP 1 Score: 295.434 bits (755), Expect = 2.338e-90 Identity = 143/335 (42.69%), Postives = 211/335 (62.99%), Query Frame = 0 Query: 38 EPTHNPHRYESSRAEKRLQIPHCSSAPWETYQYQQSNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDG-LTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYAS 371 E N + E S +E++ +I C+ + + + N++ + + GYD R+RPN+GG P+ VG + + S SISEV MD+T+ MY Q+W+D RLSF + + L + ++ +IWVPDTFF N+K ++ H T +N+ +R+ G I +R T T +C MDL Y+P+D Q C +EIES+GYT+SD+ W + V+ D LPQF ++G + L+TG Y RL+ + R++GY++ Q Y+PS LIV++SWVSFW+N AT ARV LG+TTVLTMTT+ ++LP+ISYVK+ID+YL CF VFA+LLEYA+ Sbjct: 39 ERKGNEKKKEESNSERK-RIIICNDKSVKCGALDGNANSLENVTRTIGNLLDGYDIRLRPNFGGDPLYVGFDLTIASFDSISEVSMDYTITMYLNQYWKDERLSFSTEED-KVLTLSGDFSEKIWVPDTFFANDKNSFLHDVTEQNKMVRLHGDGAITYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWRQKPVVGVE---DAQLPQFTIVGWETNERKIKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAA 368
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000006195 (supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-1 gene:EMLSAG00000006195 transcript:EMLSAT00000006195 description:"maker-LSalAtl2s339-augustus-gene-2.20") HSP 1 Score: 245.358 bits (625), Expect = 9.559e-72 Identity = 127/357 (35.57%), Postives = 207/357 (57.98%), Query Frame = 0 Query: 91 YDKRVRP---NYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRP-GLQKLVVGAEY----------------------------INQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQ-FKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPP 414 YDKR+RP N + V V ++V S S+I +V M+++ + RQ W D RL F+ + ++ +V+ ++ +++W+ DTFF NEK FH +N ++R+ G++L SIR+++T +C M L FP+D+Q C +++ S+G+TM+D+ Y+W + VQ+ ++SLP FK+ G + +TG+YS L EI F R + +Y++ IYIP +IV++SW+SFW++ A PARV LG+T +L M+T AS N++LP ++Y K+IDV+ G C VF++LLEYA V Y ++ R A QK A++++ E ++ + DGG P Sbjct: 58 YDKRIRPSGLNSTDSASLVTVNIFVRSFSNIDDVKMEYSFQITLRQQWNDGRLRFKDKLLSMEGIVIDFDFNIIPFYPDAASSGGLFQKDKIRYLTMTDSSKVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVSLTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKET-NPVQMVANLSLPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFMIVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAIDVWCGVCVTFVFSALLEYALVNYASRSDAQRA----AKQKEAKERELEQCAFSTERIEDGGFP 409
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 237.654 bits (605), Expect = 6.261e-70 Identity = 119/280 (42.50%), Postives = 180/280 (64.29%), Query Frame = 0 Query: 83 LLDS-FQKGYDKRVRP---NYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSF--ESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLG 356 +LDS GYDKR+RP N P T+ V +Y+ +IS I +V M++++ + FR+ W D RL + ++ L+ L + ++W+PDTFF NEK A H+ N ++RI GEIL SIR+++T +CPMDL+ +P+D+Q+C ++I S+G+ D+ Y W + VQ+ + LP+F + ++ + + +TG YS L E+ F R YYLI IY+P ++VI+SWVSFWL++ A PARV LGVTT+LTM+T + NA LP +SY K+IDV+ G Sbjct: 15 VLDSILGTGYDKRIRPSGKNDTDGPATINVNIYLRTISRIDDVKMEYSVQVTFREQWNDERLRYYDDTHGHLKYLTLTDP--TKVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKEK-DPVQVVPGLHLPRFTLEQYKSAYCDVTTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAIDVWTG 291
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000000919 (supercontig:LSalAtl2s:LSalAtl2s115:697711:740183:1 gene:EMLSAG00000000919 transcript:EMLSAT00000000919 description:"maker-LSalAtl2s115-augustus-gene-7.11") HSP 1 Score: 233.417 bits (594), Expect = 3.215e-67 Identity = 157/543 (28.91%), Postives = 252/543 (46.41%), Query Frame = 0 Query: 89 KGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYM---AKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEI-RLNMHDMTKSASSSVRLNKSGIPSG--SQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHN-----SPYLPTHVRHSQMHAEPPHRGEERHHHH---HHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIY 617 K YDK P Y G V + V+S+ +I E M +T D++F Q W+D RL + ++ E++ +IW PD+FF N K+ F T N ++ + IL ++LT+ SCPM + +P D Q C +EIES +T D+ + W D + + + LPQ +++ + STG ++ L +F R +GYYL Y+P+ LIVI+SW+SFW+ A PARV LGVT++LT++T A++ +LP +SY+K+IDV++ C VF SL+EYA V + I+ +K+R ++ + + N N G + P + ++ R S+S+ N + +P G H +P +H +P+G +G G Q + YF Q S S Y H ++++ P + HN Q G+ ++ H +Q E ++L K +D+ SR FP SFI NL+YW ++ Sbjct: 6 KLYDKMRPPKYKGNATEVLFHVTVMSLDTIDESSMTYTCDVFFAQSWKDNRLRLPDNMTSEYRLLPIEWLEKIWRPDSFFKNAKSVTFQTMTIPNHYIWLWKDKTILYMVKLTLVLSCPMHFKNYPHDTQTCNLEIESISHTTDDLIFTW-DKEMPLDVDKGIELPQLELISTKSDDCTTVYSTGQFTCLEVVFKFKRRLGYYLFHTYVPTCLIVIMSWISFWIKPEAVPARVTLGVTSLLTLSTQHANSQKSLPPVSYIKAIDVFMSGCTVFVFLSLMEYALVNIVMGDIADIEKKKSRGISNLILGTRGINVRSNLKGGQTASMMPAETIATKFGNDVSRDKSFSTFLPNSNSIGDNGNSVPRGHTCVHLRNPSRQINHIDPYTG----NPTGDSGYGDI---------------PPVQNEPYFVSQESNGNGTDGGDISEYSNNSSSHPRINSHQPASPPPPPNGDIGGLHNNNVISQQGMK------NLVHDVQLKRQKEI-RDLMKKKREKAVLVDRISRWLFPTSFILLNLVYWALF 521
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000004091 (supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1 gene:EMLSAG00000004091 transcript:EMLSAT00000004091 description:"maker-LSalAtl2s217-augustus-gene-4.34") HSP 1 Score: 224.557 bits (571), Expect = 2.849e-64 Identity = 131/372 (35.22%), Postives = 209/372 (56.18%), Query Frame = 0 Query: 47 ESSRAEKRLQIPHCSSAPWETYQYQQSNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASL---STGNY---SRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNR----GATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGP 407 E R ++ + + ++T Q Q ++ L+ SF YDKR+RP GG PV V + + +LS+ + E F++D YFRQ W D RL + + G++ L + ++ +IWVPDTF +N K ++ HK T N+F+R+ TG++ S RLTI A+C M+L+ FP D Q+C +++ SFG++ D+ Y+W +V + + L QF ++ + IE SL GNY S E F R GY+L+QIY P +LIV SWV+FWL + G PAR LG +VL++ + T PK+ Y ++DV++ CFF VFA+L+E+A + ++ I+ ++ K+ EQK+++ + P Sbjct: 40 EKERDDRLVSRYKRAFTAYKTGQEQTQKVSETLDHLLVYSF---YDKRIRPKLGGPPVKVVINLSILSMGPVDEARNAFSMDCYFRQSWVDERLKYNT-SGVEVLALNWAFLAKIWVPDTFIINGKKSFLHKITVPNRFVRVSPTGKVSYSQRLTILANCIMNLKKFPFDTQICPLKLGSFGHSNKDLIYQWKKP-KAVSFN-KLGLAQFHLINYSSYNIIEPSLRLTEKGNYRNDSSSVMEFVFERQSGYFLLQIYTPLTLIVFCSWVAFWLVKTEKGGEXPARTXLGANSVLSIVNI-GFTGKDRPKVGYATALDVFIILCFFTVFAALVEFACINFIDTFIKWKR------IKIEEQKESDGGKEEAEP 398
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000004092 (supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1 gene:EMLSAG00000004092 transcript:EMLSAT00000004092 description:"augustus_masked-LSalAtl2s217-processed-gene-4.1") HSP 1 Score: 216.468 bits (550), Expect = 2.727e-61 Identity = 122/328 (37.20%), Postives = 186/328 (56.71%), Query Frame = 0 Query: 70 YQQSNFADVNISALLDSF--QKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGD--VSLPQFKVLGHRQKTI-EASLSTG---NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNR----GATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRI-QMRKN 384 Y++ + +S LD+ + YD+++RP G +P+ V V + S+ + E F +D YFRQ+W DPRL + S L +L + + + +IW PDTF +N K +Y HK T N+F+RI G I S RLT+ A C MDL+ FP+D Q C +EI SFG+ + +I Y W TS+ +S D + L Q+ ++ S + G N S +A F R GYYL+QIYIP +LIV SWV+FWL + G PAR LG T L + T+ + P++ Y ++DV++ CF VFA+L+E+A + ++ + +++KN Sbjct: 66 YRRQDELSSRVSRTLDALLSENRYDRQIRPQIGDSPIKVSVNFAIRSMGPVDEQKQLFLMDCYFRQYWTDPRLVYNS-SKLNELPMNWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVKARCEMDLRKFPLDSQHCPLEIGSFGHGVDEILYNW----TSMPLSMDKKLGLAQYHLISWNNSAFTRYSRNAGGDQNVSVIALHFTFQRRTGYYLLQIYIPLTLIVCCSWVTFWLIKTEKGGEIPARTSLGGTXXLAIVTI-GFGGKSKPRVGYATALDVFIVLCFMTVFAALIEFAFINFIDTLVRRLKKN 387
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000010666 (supercontig:LSalAtl2s:LSalAtl2s706:296770:341480:-1 gene:EMLSAG00000010666 transcript:EMLSAT00000010666 description:"maker-LSalAtl2s706-snap-gene-3.11") HSP 1 Score: 201.06 bits (510), Expect = 2.431e-59 Identity = 103/175 (58.86%), Postives = 112/175 (64.00%), Query Frame = 0 Query: 71 QQSNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMY----------------------------------VLSISSISEVMM------DFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITAS 205 Q NF DVNISA+L+SFQ GYDKRVRPNYGG VTVGV+++ LS + + + DFTLDMYFRQFWQDPRLSF RPGL+KLVVGAEYI IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSI S Sbjct: 33 QNGNFNDVNISAILNSFQMGYDKRVRPNYGGIAVTVGVSIFFEFNSFSFLFLSHLSLPLSTLLSVSRLLSPTNNTTLSFPTPRQRTLFNGNTKDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSISFVPNGS 207
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000003120 (supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 gene:EMLSAG00000003120 transcript:EMLSAT00000003120 description:"maker-LSalAtl2s1753-augustus-gene-0.11") HSP 1 Score: 215.698 bits (548), Expect = 2.496e-58 Identity = 126/391 (32.23%), Postives = 200/391 (51.15%), Query Frame = 0 Query: 78 VNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQF---KVLGHRQKTI-EASLSTG--NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTH 462 V ++ LL S Y++R+RPN+GG P V + + + S+ + E + +D YFRQ W D RLSF + + +L + + +N+IW PDT+F+N K + HK T N+FLRI G + S RLTI A C M+L+ FP D Q C + I S+GYT ++ Y W D + ++ QF K + + +I ++ G N S + F R G++L+QIY P +IV+ SWV+FW+ + P+RV LGV + L++T + P + Y ++D+++ CF VF SL+EYA + Y++ I K A +KK G L H + KQ ++ + +T + S N +G+ +P+ H Sbjct: 486 VTLTKLLTS----YNRRIRPNFGGPPCKVIMNLLINSMGPVDEKSQSYLVDAYFRQAWVDQRLSFNATSSVTELPLNWQILNKIWKPDTYFINGKKSKMHKITVPNRFLRISPDGLVSFSQRLTIHAQCLMELKKFPFDSQECPLHIGSYGYTADEVLYDWKDNALEISTLAKATMTQFNLMKWISQAETSITNRKIAAGFRNDSIASINFSFKRQYGFFLLQIYTPMFIIVMCSWVAFWIVKTDAPSRVSLGVASSLSVTKI-GFAGKGKPNVEYPTALDIFIIICFMTVFLSLVEYALINYISVFISRYK---------AREKKELLARTKFGKLLSKRQKRH--LLKQKDMMKTISQLTIENNPSDDENVKTKSAGTMTDNTPLKGVH 860
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000010137 (supercontig:LSalAtl2s:LSalAtl2s66:38297:115963:1 gene:EMLSAG00000010137 transcript:EMLSAT00000010137 description:"snap_masked-LSalAtl2s66-processed-gene-1.3") HSP 1 Score: 194.512 bits (493), Expect = 2.878e-55 Identity = 109/286 (38.11%), Postives = 163/286 (56.99%), Query Frame = 0 Query: 123 MDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGA--EYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDG-LTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANS 405 MD+ D Y RQ W D RLS P ++ + A + IW P+ FF N K A F T N +RI GEIL +RL + SC M+L +P+D Q+C ++I SF T ++ +W+ SV ++ D+ +PQF++ + GNYS L E RS+G++LIQ Y+PS LIV ISWVSFW++ PARV LGV T+LT+++ ++ T ++P+ SYVK+IDV++G C VFA+L+E+ V Y+ ++ + ++ M A+NA S Sbjct: 1 MDYVTDTYLRQKWSDSRLS---HPDIKSPLDLAXPNLVKAIWKPEVFFPNAKEANFQFVTVPNVLIRIHPNGEILYILRLRLKFSCMMELSRYPLDTQICAMQISSFSKTTKELLLEWDPTHELSVTVAKDLRMPQFEMTKITTNRCHETNHMGNYSCLVAEFHLHRSIGFHLIQSYLPSVLIVAISWVSFWMDVDCVPARVTLGVITLLTVSSQVSGT--SVPQTSYVKAIDVWMGVCTAFVFAALVEFTLVNYLWRK---DSDPYMKFDAMTALATIHAVNATS 278
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000006968 (supercontig:LSalAtl2s:LSalAtl2s396:160743:177530:1 gene:EMLSAG00000006968 transcript:EMLSAT00000006968 description:"maker-LSalAtl2s396-augustus-gene-1.5") HSP 1 Score: 187.193 bits (474), Expect = 7.082e-52 Identity = 95/234 (40.60%), Postives = 137/234 (58.55%), Query Frame = 0 Query: 127 LDMYFRQFWQDPRLSFESRPG------LQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLST---------GNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKI 345 +D YFRQ+W+ RLSF + +L + + + +IW PDT+F N ++Y H T N+ LRI G+I S+RLTI A CPM L+ FPMD Q C + + S+ YT+ + Y+W +V G + L QF ++ +++ S +T G +S L I R GY+LIQIY+P +LIV++SWV FWLNR AT RVGLG+TTVLT++T+ + LPK+ Sbjct: 1 MDCYFRQYWRXERLSFTGLKNNTHHLKIDQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLKSFPMDWQSCPLVLGSYAYTIDQVYYRWQHSSNAVAYEGKLKLSQFDIITTAYRSLNFSRNTDDRYTLPLVGGFSVLQVVIALQRHTGYFLIQIYLPCTLIVVLSWVGFWLNREATSDRVGLGITTVLTLSTIALDSRTDLPKM 234
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|120775|sp|P24045.1|GBRB4_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit beta-4; AltName: Full=GABA(A) receptor subunit beta-4; Flags: Precursor) HSP 1 Score: 293.508 bits (750), Expect = 2.391e-88 Identity = 137/296 (46.28%), Postives = 202/296 (68.24%), Query Frame = 0 Query: 80 ISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYM 375 + ++D KGYD R+RP++GG PVTVG+++++ SI ISEV MD+T+ MYF+Q W+D RL++ P L + +Q+W+PDT+F+N+K ++ H T +N+ +R+ G +L +R+T TA+C MDL+ +P+D+Q C +EIES+GYT+ DI + W ++V + LPQF ++ R + E +TG+Y RL+ + R++GY+++Q Y+PS LI I+SWVSFW+N A+ ARV LGVTTVLTMTT+ LPKI YVK+IDVYL CF VF +LLEYA V Y+ Sbjct: 36 VKEIVDKLLKGYDVRLRPDFGGNPVTVGMSIHISSIDQISEVNMDYTITMYFQQSWRDKRLAYNDLP--LNLTLDNRVADQLWLPDTYFLNDKKSFLHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDQQNCTLEIESYGYTVDDIVFFWQGNDSAVTGMEVLELPQFTIIEQRLVSREVVFTTGSYLRLSLSFRIKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYI 329
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|120772|sp|P19019.1|GBRB3_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit beta-3; AltName: Full=GABA(A) receptor subunit beta-3; Flags: Precursor) HSP 1 Score: 292.738 bits (748), Expect = 3.258e-88 Identity = 158/403 (39.21%), Postives = 235/403 (58.31%), Query Frame = 0 Query: 80 ISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYM--AKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLN--------MHDMTKSASSSVRLNKSGI----PSGSQHQISPMSSTHHHHHSR 468 + +D KGYD R+RP++GG PV VG+ + + SI +SEV MD+TL MYF+Q+W+D RL++ P L + +Q+WVPDT+F+N+K ++ H T +N+ +R+ G +L +R+T TA+C MDL+ +P+D Q C +EIES+GYT DI + W G +V + LPQF ++ +R + +TG Y RL+ + R++GY+++Q Y+PS LI I+SWVSFW+N A+ ARV LG+TTVLTMTT+ LPKI YVK+ID+YL CF VF +LLEYA V Y+ K Q +K K+AE+ A N +G D HG T + ++ +T + +S++ + SGI S + + SS HS+ Sbjct: 37 VKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYAGIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVERIELPQFSIVEYRLVSKNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGKGPQRQK-------KLAEK---SAKANNDRSRFEGSRVDTHGNILLTSLEIHNEVASNEVTTSVTDARNSTISFDNSGIQYRKQSSHRESLGRRSSDRTGSHSK 427
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|52000955|sp|P63079.1|GBRB3_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit beta-3; AltName: Full=GABA(A) receptor subunit beta-3; Flags: Precursor >gi|52000959|sp|P63080.1|GBRB3_MOUSE RecName: Full=Gamma-aminobutyric acid receptor subunit beta-3; AltName: Full=GABA(A) receptor subunit beta-3; Flags: Precursor) HSP 1 Score: 292.352 bits (747), Expect = 4.250e-88 Identity = 157/401 (39.15%), Postives = 238/401 (59.35%), Query Frame = 0 Query: 80 ISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDG----GPPDHHGIPKQTEIRLNMHDMTKSA----SSSVRLNKSGIP-SGSQHQISPMSSTHHHHHSRAQT 471 + +D KGYD R+RP++GG PV VG+ + + SI +SEV MD+TL MYF+Q+W+D RL++ P L + +Q+WVPDT+F+N+K ++ H T +N+ +R+ G +L +R+T TA+C MDL+ +P+D Q C +EIES+GYT DI + W G +V + LPQF ++ HR + +TG Y RL+ + R++GY+++Q Y+PS LI I+SWVSFW+N A+ ARV LG+TTVLTMTT+ LPKI YVK+ID+YL CF VF +LLEYA V Y+ ++ + LA +K A+ K + + + + + G P D H + E+ ++ D SA +S ++ K +P G + S H H R ++ Sbjct: 37 VKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLA-EKTAKAKNDRSKSEINRVDAHGNILLAPMDVHN--EMNEVAGSVGDTRNSAISFDNSGIQYRKQSMPKEGHGRYMGDRSIPHKKTHLRRRS 432
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|14286135|sp|Q08832.2|GBRB3_DROME (RecName: Full=Gamma-aminobutyric acid receptor subunit beta-like; AltName: Full=GABA(A) receptor; Flags: Precursor) HSP 1 Score: 291.582 bits (745), Expect = 1.666e-87 Identity = 138/306 (45.10%), Postives = 201/306 (65.69%), Query Frame = 0 Query: 79 NISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSF---------ESRPGLQK-LVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGY 374 N++ + + +GYD R+RPN+GG P+ VG+ + + S +ISEV MD+T+ MY Q+W+D RL+F E+ G+ L + ++ +IWVPDTFF N+K ++ H T N+ +R+ G + +R T T +C MDL Y+P+D Q C +EIES+GYT+SD+ W T V+ D LPQF ++G+ + L+TG Y RL+ + R++GY++ Q Y+PS LIV++SWVSFW+N AT ARV LG+TTVLTMTT+ ++LP+ISYVK+ID+YL CF VFA+LLEYA+V Y Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP--TPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 342
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|74958176|sp|O18276.3|GBRB_CAEEL (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; Flags: Precursor) HSP 1 Score: 292.352 bits (747), Expect = 3.539e-87 Identity = 182/531 (34.27%), Postives = 272/531 (51.22%), Query Frame = 0 Query: 94 RVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGY----MAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHV 620 R+RP +GG + + + + + S SISEV MD+TL MY Q+W D RL + + + ++ + E+ IWVPDTF N+K +Y H+ T N+ LRI G++ +RLT T SC M+L+ FP+D Q C +EIES+GYT S++ KWN L +V +PQF + G + S +TG+Y RL+ Q RS+GY++ Q Y+P LIV++SWVSFW+N AT ARV LG+TTVLTMTT+ +LP+ISYVKSID+YL CF VFA+LLEYA+V Y + N + + ++ + A+N S G D G+P+ + R+ + S S++ N + S S+ + R+ +P P +AG S + S+S Y T ++ ++ HA H+ HH + ++ + M S + +K + + + IDKYSR+ FP+ FI FNL YW Y+ V Sbjct: 68 RLRPGFGGDALLLTMDIIIASFDSISEVDMDYTLTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWNYPL-AVHGVEQADVPQFTITGFHTEDSIVSTATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRQSLPRISYVKSIDIYLVMCFVFVFAALLEYAAVNYSYWGRERGKGGGGNEW-PVNGANKEDRESAVNVQKWVPS--GLMD--GVPQPQDRRVEALEEAMSTSNTAAQN-NNFESTSKPK------------KRSSSPIPPLCRAGNTIS--------------------------EESESPDYPRYSTTSLKGARPHASLNHKT----HHLKGRSSARAKRRMTLARMNVSMKQSISGIGR-RARKVIPTIRVRDVNLIDKYSRVVFPVCFIVFNLFYWSYYMMV 548
BLAST of gaba-alpha subunit vs. nr
Match: gi|115361507|gb|ABI95854.1| (GABA-alpha subunit, partial [Lepeophtheirus salmonis]) HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 326/370 (88.11%), Postives = 338/370 (91.35%), Query Frame = 0 Query: 74 NFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLN 443 NF DVNISA+L+SFQ GYDKRVRPNYGG PVTVGVTMY+LSISS+SEVMMDFTLDMYFRQFWQDPRLSF RPGL+KLVVGAEYI IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARVGLGVTTV TMTTLMASTNAALPKISYVKSIDVYLG CFF+VFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNA++ L+DG HG+PKQT + +HD S R N Sbjct: 4 NFNDVNISAILNSFQMGYDKRVRPNYGGPPVTVGVTMYILSISSVSEVMMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVHTMTTLMASTNAALPKISYVKSIDVYLGACFFIVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG----DHGMPKQTTVHFKVHDPKMHCKGSSREN 369 HSP 2 Score: 141.354 bits (355), Expect = 8.366e-32 Identity = 91/138 (65.94%), Postives = 100/138 (72.46%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TVHFKVHDPKMHCKG SRENTISRY H KY PPG YD+EAPP PP H + P P P P PPNP+CDMK+LNKMFGM+ASDIDKYSRV+FPVTF C QLMYWIIYQHLSDDVV++L+ Sbjct: 350 TVHFKVHDPKMHCKGSSRENTISRYTH-GKYMPRP---PPG--RYDDEAPPPPPQPHHVAPQLPPCP--------PPPAPPPPNPECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCLQLMYWIIYQHLSDDVVDDLV 473 HSP 3 Score: 73.9442 bits (180), Expect = 6.243e-10 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 Query: 578 ECK-KNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 EC K+L KM G++ SDIDKYSR+ FP++F LMYWIIY H+SD++ DDL Sbjct: 421 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCLQLMYWIIYQHLSDDVVDDLV 473
BLAST of gaba-alpha subunit vs. nr
Match: gi|1277390359|gb|ATV93516.1| (gamma-aminobutyric acid A receptor subunit 1 [Lepeophtheirus salmonis]) HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0 Identity = 326/373 (87.40%), Postives = 337/373 (90.35%), Query Frame = 0 Query: 71 QQSNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLN 443 Q NF DVNISA+L+SFQ GYDKRVRPNYGG VTVGV+MYVLSIS +SEV MDFTLDMYFRQFWQDPRLSF RPGL+KLVVGAEYI IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLG CFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNA++ L+DG HG+PKQT + +HD S R N Sbjct: 33 QNGNFNDVNISAILNSFQMGYDKRVRPNYGGIAVTVGVSMYVLSISRLSEVEMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG----DHGMPKQTTVHFKVHDPKMHCKGSSREN 401 HSP 2 Score: 144.05 bits (362), Expect = 1.433e-32 Identity = 92/138 (66.67%), Postives = 101/138 (73.19%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TVHFKVHDPKMHCKG SRENTISRY H KY PPG YD+EAPP PP H + P P P P PPNP+CDMK+LNKMFGM+ASDIDKYSRV+FPVTF CFQLMYWIIYQHLSDDVV++L+ Sbjct: 382 TVHFKVHDPKMHCKGSSRENTISRYTH-GKYMPRP---PPG--RYDDEAPPPPPQPHHVAPQLPPCP--------PPPAPPPPNPECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCFQLMYWIIYQHLSDDVVDDLV 505 HSP 3 Score: 76.2554 bits (186), Expect = 1.441e-10 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0 Query: 578 ECK-KNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 EC K+L KM G++ SDIDKYSR+ FP++F F LMYWIIY H+SD++ DDL Sbjct: 453 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCFQLMYWIIYQHLSDDVVDDLV 505
BLAST of gaba-alpha subunit vs. nr
Match: gi|1325285574|ref|XP_023327509.1| (gamma-aminobutyric acid receptor subunit beta-like [Eurytemora affinis]) HSP 1 Score: 640.188 bits (1650), Expect = 0.000e+0 Identity = 349/581 (60.07%), Postives = 408/581 (70.22%), Query Frame = 0 Query: 74 NFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPD-HHGIPKQTEIRLNMHD--MTKSASSSVRLNKSGIPSGSQHQI------SPMSSTHH---HHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQ------------MHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 +F DVNIS++L+SFQ+GYDKRVRPNYGG PVTVGVTMY+LSISS+SEVMMDFTLDMYFRQFW+DPRL FE + GL+KLVVGAEYIN IW PDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP FGYTM+DIRY+WNDGL SVQ+SGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV+ISWVSFWLNRGATPARVGLGVTTVLTMTTL++STN+ALPKISYVKSIDVYL CFFMVFASL+EYASVGYMAKRIQMRKNRFLA+QKMAEQKKNEA+++++ + + D +PKQTEIRLNMHD + ++A S +R G + H + P+ HH + + Q GG S PSD + S + N Y ++ S+ +H + H +N + ++P +A + ++ MLG++ SDIDKYSRI FP++F F LMYW+IY H++ DDL + Sbjct: 31 DFNDVNISSILNSFQEGYDKRVRPNYGGIPVTVGVTMYILSISSVSEVMMDFTLDMYFRQFWRDPRLQFEKKKGLEKLVVGAEYINLIWTPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP-----------PFGYTMNDIRYEWNDGLNSVQVSGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVVISWVSFWLNRGATPARVGLGVTTVLTMTTLISSTNSALPKISYVKSIDVYLAACFFMVFASLIEYASVGYMAKRIQMRKNRFLAIQKMAEQKKNEALHSSNANIHEAVNADVSSNMPKQTEIRLNMHDPLLRRNAGSMMRGGGQGFTGSTSHLLPGANHGGPLPQIQDGLLHHQAPPLLQCKKNLQKMGGIS--------------PSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSVHFNLGVKRAPEHLELKYNTTLYKHNSIPMNMVP------LAAPLSIRSHSHINSMLGMAASDIDKYSRIVFPVTFFCFQLMYWVIYDHLAQVYIDDLVL 580 HSP 2 Score: 150.984 bits (380), Expect = 2.046e-34 Identity = 105/307 (34.20%), Postives = 149/307 (48.53%), Query Frame = 0 Query: 489 QPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHH----------HNPGGSGQPGLSGRLLP---HHMPH--------HASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDL-----TVHFKVHDPKMHCKGGSRENTISRYHHENKYSM---HHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 + ++ ++++ ++Q++ E H + ++H + ++ + + P + E R + H GG G G + LLP H P H A L+CKKNLQKM GISPSDIDKYSR+ FP+SF FNLMYWIIY+++S+E+ DL +VHF + G R + H E KY+ H IP M A PL S H +N M GM+ASDIDKYSR++FPVTF CFQLMYW+IY HL+ +++L+ Sbjct: 328 RKNRFLAIQKMAEQKKNEALHSSNA-NIHEAV-------NADVSSNMPKQTEIRLNMHDPLLRRNAGSMMRGGGQGFTGSTSHLLPGANHGGPLPQIQDGLLHHQAPPLLQCKKNLQKMGGISPSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSVHFNL--------GVKR----APEHLELKYNTTLYKHNSIPMNMV---PLAAPLSIRSHSH--------------------------------INSMLGMAASDIDKYSRIVFPVTFFCFQLMYWVIYDHLAQVYIDDLV 579 HSP 3 Score: 78.5666 bits (192), Expect = 3.674e-11 Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0 Query: 710 PPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELLRYGLPV 772 PP C K L KM G+S SDIDKYSRVLFPV+F CF LMYWIIY ++S++VV +L+ G V Sbjct: 426 PPLLQCK-KNLQKMGGISPSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSV 487
BLAST of gaba-alpha subunit vs. nr
Match: gi|646716740|gb|KDR19866.1| (Gamma-aminobutyric acid receptor subunit beta, partial [Zootermopsis nevadensis]) HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0 Identity = 345/571 (60.42%), Postives = 388/571 (67.95%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHH---HHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHH---HNPGGSGQPGLSGRL-------LPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 S DVNISA+LDSF YDKRVRPNYGGTPV VG+TMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK A+ P G DH PKQT S N S IP G H P T H HH+ R G G GS+ Y + SL N+ Y P E R H H+ GG+ + ++GR P H+ H K++ K+ GI+PSDIDKYSRI FP+ FI FNLMYWIIYLH+SD +ADDL + Sbjct: 5 SMLGDVNISAILDSFSASYDKRVRPNYGGTPVEVGITMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKAGLEAAHGPPPGPPGEGDH--APKQT-------------VSVASQNCSSIPRG--HDAQPHGVTTHARLHHNHR--------GMLIGAGSVVQY----WLSL---------------------NTLYTGCFFYDGPGLGPCPLFQEVRFKVHDPKVHSKGGTLENTINGRTDEEAAAPAPQHLIHPG---------KDINKLYGITPSDIDKYSRIVFPVCFICFNLMYWIIYLHISDVVADDLVL 516 HSP 2 Score: 95.5153 bits (236), Expect = 1.330e-16 Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FKVHDPK+H KGG+ ENTI+ R +E A P P QH + PG K++NK++G++ SDIDKYSR++FPV FICF LMYWIIY H+SD V ++L+ Sbjct: 426 VRFKVHDPKVHSKGGTLENTING------------------RTDEEAAAPAP---QH-----LIHPG---------------------KDINKLYGITPSDIDKYSRIVFPVCFICFNLMYWIIYLHISDVVADDLV 515
BLAST of gaba-alpha subunit vs. nr
Match: gi|328711150|ref|XP_001947125.2| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X1 [Acyrthosiphon pisum]) HSP 1 Score: 606.675 bits (1563), Expect = 0.000e+0 Identity = 340/565 (60.18%), Postives = 390/565 (69.03%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGGTP+ VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ E + H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGTPIEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHAHRQTEVRFKA---HDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 563 HSP 2 Score: 91.2781 bits (225), Expect = 2.852e-15 Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 471 VRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 562
BLAST of gaba-alpha subunit vs. nr
Match: gi|328711148|ref|XP_003244457.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X2 [Acyrthosiphon pisum]) HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0 Identity = 340/565 (60.18%), Postives = 390/565 (69.03%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV+MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ E + H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHAHRQTEVRFKA---HDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 563 HSP 2 Score: 91.2781 bits (225), Expect = 3.168e-15 Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 471 VRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 562
BLAST of gaba-alpha subunit vs. nr
Match: gi|641664434|ref|XP_008183011.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X4 [Acyrthosiphon pisum]) HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0 Identity = 342/568 (60.21%), Postives = 391/568 (68.84%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHH---HHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV+MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ HR R H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHA-------HRQTVRFKAHDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 562 HSP 2 Score: 93.2041 bits (230), Expect = 8.952e-16 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TV FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 469 TVRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 561
BLAST of gaba-alpha subunit vs. nr
Match: gi|641664432|ref|XP_008183010.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X3 [Acyrthosiphon pisum]) HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0 Identity = 342/568 (60.21%), Postives = 391/568 (68.84%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHH---HHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGGTP+ VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ HR R H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGTPIEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHA-------HRQTVRFKAHDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 562 HSP 2 Score: 93.2041 bits (230), Expect = 8.494e-16 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TV FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 469 TVRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 561
BLAST of gaba-alpha subunit vs. nr
Match: gi|1351635300|ref|XP_024083545.1| (gamma-aminobutyric acid receptor subunit beta isoform X10 [Cimex lectularius]) HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0 Identity = 328/557 (58.89%), Postives = 381/557 (68.40%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 S DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F + G++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+A+++ N + P GG PDH PKQ T+ V++ I S + P + H + Q P+ +L P H +R Q + T VR+ + H H GG+ + ++GR P ++ K+ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL Sbjct: 38 SMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKLAQEQ-----NQKTEPHPPGGDPDHA--PKQ----------TRKKGHQVQMRDPSIISSYAATLPPSKAVHQERRQQMQQTRDPTSIYAA-------------TLPPPKP------VHPERRQQMQQ-----TEVRY------------KVHDPKAHFKGGTLENTINGRADEEAGPL---TQHLIQSTKDYNKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 538 HSP 2 Score: 93.5893 bits (231), Expect = 4.750e-16 Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELLR 767 V +KVHDPK H KGG+ ENTI+ DEEA PL +QH K+ NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+R Sbjct: 450 VRYKVHDPKAHFKGGTLENTING-------------------RADEEAGPL---TQHLIQ--------------------------STKDYNKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVR 539
BLAST of gaba-alpha subunit vs. nr
Match: gi|1351635298|ref|XP_024083544.1| (gamma-aminobutyric acid receptor subunit beta isoform X9 [Cimex lectularius]) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 327/557 (58.71%), Postives = 382/557 (68.58%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 S DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F + G++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+A+++ N + P GG PDH PKQ T+ V++ I S + P + H + Q P+ +L P H +R Q + T VR+ ++H H + + + G S ++P +P H L+ K+ K+ GI+ S IDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL Sbjct: 38 SMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKLAQEQ-----NQKTEPHPPGGDPDHA--PKQ----------TRKKGHQVQMRDPSIISSYAATLPPSKAVHQERRQQMQQTRDPTSIYAA-------------TLPPPKP------VHPERRQQMQQ-----TEVRY-KLHDPKAHFKGGKLENTINGRAEEEVAGRSAIVIP--IPQHI-----LQPTKDYNKLYGITASGIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 545 HSP 2 Score: 88.5817 bits (218), Expect = 2.209e-14 Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPP-MVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V +K+HDPK H KGG ENTI+ GRA G P+P ++ P K+ NK++G++AS IDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 450 VRYKLHDPKAHFKGGKLENTIN-------------------------------------GRAEEEVAGRSAIVIPIPQHILQPT-----KDYNKLYGITASGIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 545 The following BLAST results are available for this feature:
BLAST of gaba-alpha subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of gaba-alpha subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of gaba-alpha subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1004_size71882:21314..50164+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1004_size71882-snap-gene-0.10 ID=maker-scaffold1004_size71882-snap-gene-0.10|Name=gaba-alpha subunit|organism=Tigriopus kingsejongensis|type=gene|length=28851bp|location=Sequence derived from alignment at scaffold1004_size71882:21314..50164+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gaba-alpha subunit' has the following synonyms
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