gaba-alpha subunit, maker-scaffold1004_size71882-snap-gene-0.10 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000003313 (supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 115.161 bits (287), Expect = 1.972e-27 Identity = 85/295 (28.81%), Postives = 144/295 (48.81%), Query Frame = 0 Query: 89 KGYDKRVRPNY-GGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFES--------RPGLQK--LVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEA-SLSTG-NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYA 370 K Y K P+ TP+ VGV + I I++V TL+ YF W D RL S +P ++K + + ++ I ++W+ D +N + ++ + + I E++ S+ IT C M FPMD Q+C ++ SF Y M+ + + +ND + S Q S +L ++V + E L+ G NYS +I R + +Y++ Y+PS+L V++SW+SF +N P R+ L VT L + + + PK + +I+ ++ C VF +L EY Sbjct: 39 KNYAKYELPDEDSATPIIVGVD--IKDIPKINDVDFSITLNAYFYVKWVDKRLRILSYNSSDINRKPHMKKQSIAINSKIIEKLWLXDVEILNLSSFETLSVLSKLEGVWIGENSELMYSLATRITIICRMKFNAFPMDIQVCKFQVGSFNYDMNKMIF-FNDFIPSKQNSQQTTL-DYQVNFQDLRPDETHYLALGMNYSVAGFQIILTRKVSFYIVTYYLPSALFVLVSWISFLVNPEVIPGRMTLLVTIFLVLINIFNTIQTNSPKADGLTAIEAWVIACIIFVFGALGEYT 329
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000011211 (supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1 gene:EMLSAG00000011211 transcript:EMLSAT00000011211 description:"maker-LSalAtl2s765-snap-gene-1.16") HSP 1 Score: 112.464 bits (280), Expect = 4.532e-27 Identity = 92/337 (27.30%), Postives = 141/337 (41.84%), Query Frame = 0 Query: 130 YFRQFWQDPRLSF--------ESRPGLQKLV-VGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWN----------DGLTSVQISGDVSLPQ-----------FKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAK-RIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKS 435 YF W DPRL E+R G + V + + IW P+ + + E +RI I + + IT SC M +P+D C ++ S Y DI W D +VQ S Q F+ L + +++ L +G Y+ +IQ VR YL+Q+Y+PS + V+ SWVSF + P R+ L VT L + + S P S + +ID+YL C F+VF +L+EYA + + K R + +++ L+KM N + PL G G P + R+ D +S Sbjct: 1 YFGVSWLDPRLKINSSASEWSEARTGPKNEVNISPGSLRYIWYPELEIYGLEKFGRQRVLKEMSGVRIRKNKTIHYELGVRITISCRMMFDDYPLDAHTCQFQVGSCKY--QDITRPWGKSTYQLLSDYDSNKTVQCSSSYVYDQIRQRSLQHYITFEELPEKDRSV--VLPSGTYAACGFQIQLVRKQMQYLVQVYLPSCMFVVTSWVSFLIKPEVVPGRMALLVTLFLVLINIFNSVRERAPISSKLNAIDLYLVVCIFLVFGALMEYAVILLLLKQRRKPKRSIDSGLRKMFN-------NGEAQPLQGGSTNFEAGRPTPQKKRIESRDELQS 326
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000008455 (supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11") HSP 1 Score: 112.079 bits (279), Expect = 6.025e-27 Identity = 80/281 (28.47%), Postives = 132/281 (46.98%), Query Frame = 0 Query: 112 VLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLV-VGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLP---QFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGY---MAKRIQMRKNR 385 VL + + + TL+MYF W + RL+ + PG + + +++N +WVP+ F N + + + L + ++ + +T CPM FP+D+ C + S Y M+ + + +N L+ +SG+ L Q K L + I TGNYS E+ R+M YL Y+PS L V +SWVSF + P R+ L VT L + + + P + + +I ++ C F VF +LL YA++ Y M K+ + K R Sbjct: 5 VLDVLRVDDKKFSVTLNMYFGVRWTENRLT-KMTPGTSSWIPIDMDFMNYLWVPNVFVYNLVSFHALDCLKKLAGLWVAEGKDLFYNQATHVTFMCPMRFNKFPLDQHSCKFLVGSTNYDMTRMLFDYNT-LSYDPLSGNTILDYRIQIKPLKTADRIINYG-ETGNYSLTGFEMTLTRNMAKYLYIYYLPSGLFVGVSWVSFLIPPDVVPGRMALLVTLFLVLINIFNTITNVSPNVEGMXAISSWMIACMFFVFGALLGYAAILYVLLMKKKNCLIKKR 282
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000009827 (supercontig:LSalAtl2s:LSalAtl2s639:754218:772660:1 gene:EMLSAG00000009827 transcript:EMLSAT00000009827 description:"maker-LSalAtl2s639-augustus-gene-6.12") HSP 1 Score: 107.457 bits (267), Expect = 2.085e-26 Identity = 69/198 (34.85%), Postives = 109/198 (55.05%), Query Frame = 0 Query: 253 LPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSG 450 +PQF V E S GNYS L + RS+G++++Q Y+P+ LIV+ISWVSFW++ + P R LGVTT+LT+++ A NA P++SYVK+IDV++G C +FA+L+E+ + Y+ +R ++ + A Q + N P S+G Q+E N+H + AS+ + + I G Sbjct: 1 MPQFTVEQVETDNCEESSLIGNYSCLVAKFHLSRSLGFHMVQSYVPTILIVVISWVSFWMDVDSVPGRTTLGVTTLLTVSSKSAGLNAETPQVSYVKAIDVWMGACTAFIFAALIEFTIINYLWRRTKINYSVSTAFDGFDLQN----LEKNEFPQSNG--------ENQSEQTSNIHPPSTVASNRNIIFEKNISYG 186
BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000003314 (supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-1 gene:EMLSAG00000003314 transcript:EMLSAT00000003314 description:"augustus_masked-LSalAtl2s181-processed-gene-4.3") HSP 1 Score: 109.768 bits (273), Expect = 1.435e-25 Identity = 87/341 (25.51%), Postives = 148/341 (43.40%), Query Frame = 0 Query: 89 KGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLV-----------VGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLS-TGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHH 417 + Y K PN T V VG+ + I I + TL+ +F W+D RL + + + K+ V +I + W+PD +N K ++ + L + EI+ ++ IT CPM FP+D Q+C ++ SF Y +S + + +D + Q L F + + ++ TGNYS E+ R + +Y+I Y+PS + VI+SW+SF + P R+ L VT L + + + +PK + +I+ ++ C VF +L+EYA + L K+ + + N N G + G D Sbjct: 72 RNYSKFDLPNETQTVVNVGID--IKDIPKIDDKDFSITLNSFFVVRWKDERLIIDQKK-MDKIFKKGEDADSWIPVDVSFIKEFWLPDAEILNLKEFKTLDVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCRFQVGSFNYDISKMVF--HDEFIADQSQIRSVLDYFIEIRKLPDEYQHYVALTGNYSVAGFELTLQRKVSHYIITYYLPSGMFVIVSWISFLVPPDIVPGRMTLLVTVFLVLVNIFNTITTNIPKAEGLTAIEAWVIVCVLFVFGALIEYAGL--------------LLKIKLGSTRVRQPSNGNEGSMILNGNIDER 393
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|74919269|sp|Q75NA5.2|GBRB_MUSDO (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; AltName: Full=MdRdl; Flags: Precursor) HSP 1 Score: 534.258 bits (1375), Expect = 2.349e-179 Identity = 262/331 (79.15%), Postives = 291/331 (87.92%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNA 403 S DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL++ RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+R+ H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIV+ISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRK RF+ +QKMAEQKK + ++ Sbjct: 50 SMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAVEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVVISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMTIQKMAEQKKQQQLDG 380 HSP 2 Score: 90.1225 bits (222), Expect = 2.150e-17 Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0 Query: 563 LPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 +P H+ H + KK++ K+LGI+PSDIDKYSRI FP+ F+ FNLMYWIIYLHVSD +ADDL + Sbjct: 510 VPAHLLHPG------KVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVL 571 HSP 3 Score: 88.1965 bits (217), Expect = 1.042e-16 Identity = 52/140 (37.14%), Postives = 70/140 (50.00%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELLRYG 769 V FKVHDPK H KGG+ ENT++ H G P + A + P +P K++NK+ G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ G Sbjct: 447 VRFKVHDPKAHSKGGTLENTVNGGRGGPPVGPHGPGPQGPPGGPPAGGGGGGAPPEGGDAEAAV-------------PAHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLLG 573
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|78099775|sp|Q61603.3|GLRA4_MOUSE (RecName: Full=Glycine receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 302.368 bits (773), Expect = 5.943e-92 Identity = 142/294 (48.30%), Postives = 203/294 (69.05%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQF-----KVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S S++E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIRLT+ SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W + +VQ++ ++LPQF K LG+ K +TG ++ + + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VFA+LLEYA+V +++++ Sbjct: 56 GYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTK----HYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQ 344
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|116242496|sp|O75311.2|GLRA3_HUMAN (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 301.597 bits (771), Expect = 1.226e-91 Identity = 143/312 (45.83%), Postives = 208/312 (66.67%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 396 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARV LG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ ++ R+ R + A +K Sbjct: 56 GYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|121580|sp|P24524.1|GLRA3_RAT (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 301.597 bits (771), Expect = 1.252e-91 Identity = 143/312 (45.83%), Postives = 208/312 (66.67%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 396 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARV LG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ ++ R+ R + A +K Sbjct: 56 GYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|66774025|sp|Q91XP5.2|GLRA3_MOUSE (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 301.597 bits (771), Expect = 1.403e-91 Identity = 143/312 (45.83%), Postives = 208/312 (66.67%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 396 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARV LG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ ++ R+ R + A +K Sbjct: 56 GYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|262527577|sp|Q5JXX5.3|GLRA4_HUMAN (RecName: Full=Glycine receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 298.13 bits (762), Expect = 5.820e-91 Identity = 138/290 (47.59%), Postives = 199/290 (68.62%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S SSI++ MD+ ++++ RQ W DPRLS+ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIRLT+ SC MDL+ FPMD Q C +++ESFGYTM D+ ++W + +VQ++ ++LPQF + + +TG ++ + + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VFA+LLEYA++ +++++ Sbjct: 57 GYDARIRPNFKGPPVNVTCNIFINSFSSITKTTMDYRVNVFLRQQWNDPRLSYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCLMDLKNFPMDIQTCTMQLESFGYTMKDLVFEWLEDAPAVQVAEGLTLPQFILRDEKDLGCCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSRQ 345
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|116242495|sp|P23415.2|GLRA1_HUMAN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 299.286 bits (765), Expect = 6.607e-91 Identity = 136/290 (46.90%), Postives = 202/290 (69.66%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A+FH+ TT+N+ LRI G +L SIR+T+T +CPMDL+ FPMD Q C +++ESFGYTM+D+ ++W + +VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SW+SFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ Sbjct: 51 GYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPD-DSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQ-GAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 338
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|12644526|sp|P57695.1|GLRA1_BOVIN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 299.286 bits (765), Expect = 7.641e-91 Identity = 136/290 (46.90%), Postives = 202/290 (69.66%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A+FH+ TT+N+ LRI G +L SIR+T+T +CPMDL+ FPMD Q C +++ESFGYTM+D+ ++W + +VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SW+SFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ Sbjct: 51 GYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPD-DSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQ-GAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 338
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|12644459|sp|Q64018.2|GLRA1_MOUSE (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 298.516 bits (763), Expect = 1.771e-90 Identity = 136/290 (46.90%), Postives = 202/290 (69.66%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A+FH+ TT+N+ LRI G +L SIR+T+T +CPMDL+ FPMD Q C +++ESFGYTM+D+ ++W + +VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SW+SFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V +++++ Sbjct: 51 GYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPD-DSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQ-GAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 338
BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|6647527|sp|O93430.1|GLRA1_DANRE (RecName: Full=Glycine receptor subunit alphaZ1; Flags: Precursor) HSP 1 Score: 297.745 bits (761), Expect = 1.846e-90 Identity = 137/290 (47.24%), Postives = 201/290 (69.31%), Query Frame = 0 Query: 90 GYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQ-KTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKR 378 GYD R+RPN+ G PV V +++ S SI+E MD+ ++++ RQ W DPRL++ P L + ++ IW PD FF NEK A FH+ TT+N+ LRI G +L SIR+T+ +CPMDL+ FPMD Q C +++ESFGYTM+D+ ++W++ +VQ++ ++LPQF + + + +TG ++ + R MGYYLIQ+YIPS LIVI+SWVSFW+N A PARVGLG+TTVLTMTT + + A+LPK+SYVK+ID+++ C VF++LLEYA+V ++A++ Sbjct: 47 GYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLYSIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEK-GAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARQ 334
BLAST of gaba-alpha subunit vs. nr
Match: gi|115361507|gb|ABI95854.1| (GABA-alpha subunit, partial [Lepeophtheirus salmonis]) HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 326/370 (88.11%), Postives = 338/370 (91.35%), Query Frame = 0 Query: 74 NFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLN 443 NF DVNISA+L+SFQ GYDKRVRPNYGG PVTVGVTMY+LSISS+SEVMMDFTLDMYFRQFWQDPRLSF RPGL+KLVVGAEYI IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARVGLGVTTV TMTTLMASTNAALPKISYVKSIDVYLG CFF+VFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNA++ L+DG HG+PKQT + +HD S R N Sbjct: 4 NFNDVNISAILNSFQMGYDKRVRPNYGGPPVTVGVTMYILSISSVSEVMMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVHTMTTLMASTNAALPKISYVKSIDVYLGACFFIVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG----DHGMPKQTTVHFKVHDPKMHCKGSSREN 369 HSP 2 Score: 141.354 bits (355), Expect = 8.366e-32 Identity = 91/138 (65.94%), Postives = 100/138 (72.46%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TVHFKVHDPKMHCKG SRENTISRY H KY PPG YD+EAPP PP H + P P P P PPNP+CDMK+LNKMFGM+ASDIDKYSRV+FPVTF C QLMYWIIYQHLSDDVV++L+ Sbjct: 350 TVHFKVHDPKMHCKGSSRENTISRYTH-GKYMPRP---PPG--RYDDEAPPPPPQPHHVAPQLPPCP--------PPPAPPPPNPECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCLQLMYWIIYQHLSDDVVDDLV 473 HSP 3 Score: 73.9442 bits (180), Expect = 6.243e-10 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 Query: 578 ECK-KNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 EC K+L KM G++ SDIDKYSR+ FP++F LMYWIIY H+SD++ DDL Sbjct: 421 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCLQLMYWIIYQHLSDDVVDDLV 473
BLAST of gaba-alpha subunit vs. nr
Match: gi|1277390359|gb|ATV93516.1| (gamma-aminobutyric acid A receptor subunit 1 [Lepeophtheirus salmonis]) HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0 Identity = 326/373 (87.40%), Postives = 337/373 (90.35%), Query Frame = 0 Query: 71 QQSNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLN 443 Q NF DVNISA+L+SFQ GYDKRVRPNYGG VTVGV+MYVLSIS +SEV MDFTLDMYFRQFWQDPRLSF RPGL+KLVVGAEYI IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLG CFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNA++ L+DG HG+PKQT + +HD S R N Sbjct: 33 QNGNFNDVNISAILNSFQMGYDKRVRPNYGGIAVTVGVSMYVLSISRLSEVEMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG----DHGMPKQTTVHFKVHDPKMHCKGSSREN 401 HSP 2 Score: 144.05 bits (362), Expect = 1.433e-32 Identity = 92/138 (66.67%), Postives = 101/138 (73.19%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TVHFKVHDPKMHCKG SRENTISRY H KY PPG YD+EAPP PP H + P P P P PPNP+CDMK+LNKMFGM+ASDIDKYSRV+FPVTF CFQLMYWIIYQHLSDDVV++L+ Sbjct: 382 TVHFKVHDPKMHCKGSSRENTISRYTH-GKYMPRP---PPG--RYDDEAPPPPPQPHHVAPQLPPCP--------PPPAPPPPNPECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCFQLMYWIIYQHLSDDVVDDLV 505 HSP 3 Score: 76.2554 bits (186), Expect = 1.441e-10 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0 Query: 578 ECK-KNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 EC K+L KM G++ SDIDKYSR+ FP++F F LMYWIIY H+SD++ DDL Sbjct: 453 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCFQLMYWIIYQHLSDDVVDDLV 505
BLAST of gaba-alpha subunit vs. nr
Match: gi|1325285574|ref|XP_023327509.1| (gamma-aminobutyric acid receptor subunit beta-like [Eurytemora affinis]) HSP 1 Score: 640.188 bits (1650), Expect = 0.000e+0 Identity = 349/581 (60.07%), Postives = 408/581 (70.22%), Query Frame = 0 Query: 74 NFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPD-HHGIPKQTEIRLNMHD--MTKSASSSVRLNKSGIPSGSQHQI------SPMSSTHH---HHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQ------------MHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 +F DVNIS++L+SFQ+GYDKRVRPNYGG PVTVGVTMY+LSISS+SEVMMDFTLDMYFRQFW+DPRL FE + GL+KLVVGAEYIN IW PDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP FGYTM+DIRY+WNDGL SVQ+SGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV+ISWVSFWLNRGATPARVGLGVTTVLTMTTL++STN+ALPKISYVKSIDVYL CFFMVFASL+EYASVGYMAKRIQMRKNRFLA+QKMAEQKKNEA+++++ + + D +PKQTEIRLNMHD + ++A S +R G + H + P+ HH + + Q GG S PSD + S + N Y ++ S+ +H + H +N + ++P +A + ++ MLG++ SDIDKYSRI FP++F F LMYW+IY H++ DDL + Sbjct: 31 DFNDVNISSILNSFQEGYDKRVRPNYGGIPVTVGVTMYILSISSVSEVMMDFTLDMYFRQFWRDPRLQFEKKKGLEKLVVGAEYINLIWTPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP-----------PFGYTMNDIRYEWNDGLNSVQVSGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVVISWVSFWLNRGATPARVGLGVTTVLTMTTLISSTNSALPKISYVKSIDVYLAACFFMVFASLIEYASVGYMAKRIQMRKNRFLAIQKMAEQKKNEALHSSNANIHEAVNADVSSNMPKQTEIRLNMHDPLLRRNAGSMMRGGGQGFTGSTSHLLPGANHGGPLPQIQDGLLHHQAPPLLQCKKNLQKMGGIS--------------PSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSVHFNLGVKRAPEHLELKYNTTLYKHNSIPMNMVP------LAAPLSIRSHSHINSMLGMAASDIDKYSRIVFPVTFFCFQLMYWVIYDHLAQVYIDDLVL 580 HSP 2 Score: 150.984 bits (380), Expect = 2.046e-34 Identity = 105/307 (34.20%), Postives = 149/307 (48.53%), Query Frame = 0 Query: 489 QPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHH----------HNPGGSGQPGLSGRLLP---HHMPH--------HASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDL-----TVHFKVHDPKMHCKGGSRENTISRYHHENKYSM---HHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 + ++ ++++ ++Q++ E H + ++H + ++ + + P + E R + H GG G G + LLP H P H A L+CKKNLQKM GISPSDIDKYSR+ FP+SF FNLMYWIIY+++S+E+ DL +VHF + G R + H E KY+ H IP M A PL S H +N M GM+ASDIDKYSR++FPVTF CFQLMYW+IY HL+ +++L+ Sbjct: 328 RKNRFLAIQKMAEQKKNEALHSSNA-NIHEAV-------NADVSSNMPKQTEIRLNMHDPLLRRNAGSMMRGGGQGFTGSTSHLLPGANHGGPLPQIQDGLLHHQAPPLLQCKKNLQKMGGISPSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSVHFNL--------GVKR----APEHLELKYNTTLYKHNSIPMNMV---PLAAPLSIRSHSH--------------------------------INSMLGMAASDIDKYSRIVFPVTFFCFQLMYWVIYDHLAQVYIDDLV 579 HSP 3 Score: 78.5666 bits (192), Expect = 3.674e-11 Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0 Query: 710 PPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELLRYGLPV 772 PP C K L KM G+S SDIDKYSRVLFPV+F CF LMYWIIY ++S++VV +L+ G V Sbjct: 426 PPLLQCK-KNLQKMGGISPSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVVPDLVLLGSSV 487
BLAST of gaba-alpha subunit vs. nr
Match: gi|646716740|gb|KDR19866.1| (Gamma-aminobutyric acid receptor subunit beta, partial [Zootermopsis nevadensis]) HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0 Identity = 345/571 (60.42%), Postives = 388/571 (67.95%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHH---HHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHH---HNPGGSGQPGLSGRL-------LPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 S DVNISA+LDSF YDKRVRPNYGGTPV VG+TMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK A+ P G DH PKQT S N S IP G H P T H HH+ R G G GS+ Y + SL N+ Y P E R H H+ GG+ + ++GR P H+ H K++ K+ GI+PSDIDKYSRI FP+ FI FNLMYWIIYLH+SD +ADDL + Sbjct: 5 SMLGDVNISAILDSFSASYDKRVRPNYGGTPVEVGITMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKAGLEAAHGPPPGPPGEGDH--APKQT-------------VSVASQNCSSIPRG--HDAQPHGVTTHARLHHNHR--------GMLIGAGSVVQY----WLSL---------------------NTLYTGCFFYDGPGLGPCPLFQEVRFKVHDPKVHSKGGTLENTINGRTDEEAAAPAPQHLIHPG---------KDINKLYGITPSDIDKYSRIVFPVCFICFNLMYWIIYLHISDVVADDLVL 516 HSP 2 Score: 95.5153 bits (236), Expect = 1.330e-16 Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FKVHDPK+H KGG+ ENTI+ R +E A P P QH + PG K++NK++G++ SDIDKYSR++FPV FICF LMYWIIY H+SD V ++L+ Sbjct: 426 VRFKVHDPKVHSKGGTLENTING------------------RTDEEAAAPAP---QH-----LIHPG---------------------KDINKLYGITPSDIDKYSRIVFPVCFICFNLMYWIIYLHISDVVADDLV 515
BLAST of gaba-alpha subunit vs. nr
Match: gi|328711150|ref|XP_001947125.2| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X1 [Acyrthosiphon pisum]) HSP 1 Score: 606.675 bits (1563), Expect = 0.000e+0 Identity = 340/565 (60.18%), Postives = 390/565 (69.03%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGGTP+ VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ E + H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGTPIEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHAHRQTEVRFKA---HDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 563 HSP 2 Score: 91.2781 bits (225), Expect = 2.852e-15 Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 471 VRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 562
BLAST of gaba-alpha subunit vs. nr
Match: gi|328711148|ref|XP_003244457.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X2 [Acyrthosiphon pisum]) HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0 Identity = 340/565 (60.18%), Postives = 390/565 (69.03%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV+MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ E + H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHAHRQTEVRFKA---HDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 563 HSP 2 Score: 91.2781 bits (225), Expect = 3.168e-15 Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 471 VRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 562
BLAST of gaba-alpha subunit vs. nr
Match: gi|641664434|ref|XP_008183011.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X4 [Acyrthosiphon pisum]) HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0 Identity = 342/568 (60.21%), Postives = 391/568 (68.84%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHH---HHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV+MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ HR R H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHA-------HRQTVRFKAHDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 562 HSP 2 Score: 93.2041 bits (230), Expect = 8.952e-16 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TV FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 469 TVRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 561
BLAST of gaba-alpha subunit vs. nr
Match: gi|641664432|ref|XP_008183010.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X3 [Acyrthosiphon pisum]) HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0 Identity = 342/568 (60.21%), Postives = 391/568 (68.84%), Query Frame = 0 Query: 75 FADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHH---HHNPGGSGQPGLSGR---------LLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLTV 630 F DVNISA+LDSF YDKRVRPNYGGTP+ VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F RPG++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+AEQKK G HG Q + R +M+ + S SG + S H +T H S PPS AG GG D R + H S LP + H+ HR R H ++ GGS + ++GR L P H+ H + K++ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL + Sbjct: 40 FGDVNISAILDSFSLSYDKRVRPNYGGTPIEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKIAEQKKG------------GHDTLGHGHSHQQQ-RSGHGNMSGHNTLSGHNTLSGHNTLSGHNTLSGHNTLSHGLSGHGLPPSHGTMAGHGG----------------YDTHRHSHSGHGGHGGTLPSQILPGDMDHA-------HRQTVRFKAHDPKNYLKGGSLENTINGRGDDDCNITPLPPQHVMHPS---------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 562 HSP 2 Score: 93.2041 bits (230), Expect = 8.494e-16 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 0 Query: 629 TVHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 TV FK HDPK + KGGS ENTI+ RG D++ P P QH ++ P+ K++NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 469 TVRFKAHDPKNYLKGGSLENTING-----------RG--------DDDCNITPLPPQH---------------------VMHPS-----KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 561
BLAST of gaba-alpha subunit vs. nr
Match: gi|1351635300|ref|XP_024083545.1| (gamma-aminobutyric acid receptor subunit beta isoform X10 [Cimex lectularius]) HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0 Identity = 328/557 (58.89%), Postives = 381/557 (68.40%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 S DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F + G++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+A+++ N + P GG PDH PKQ T+ V++ I S + P + H + Q P+ +L P H +R Q + T VR+ + H H GG+ + ++GR P ++ K+ K+ GI+PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL Sbjct: 38 SMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKLAQEQ-----NQKTEPHPPGGDPDHA--PKQ----------TRKKGHQVQMRDPSIISSYAATLPPSKAVHQERRQQMQQTRDPTSIYAA-------------TLPPPKP------VHPERRQQMQQ-----TEVRY------------KVHDPKAHFKGGTLENTINGRADEEAGPL---TQHLIQSTKDYNKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 538 HSP 2 Score: 93.5893 bits (231), Expect = 4.750e-16 Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELLR 767 V +KVHDPK H KGG+ ENTI+ DEEA PL +QH K+ NK++G++ SDIDKYSR++FPV F+CF LMYWIIY H+SD V ++L+R Sbjct: 450 VRYKVHDPKAHFKGGTLENTING-------------------RADEEAGPL---TQHLIQ--------------------------STKDYNKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVR 539
BLAST of gaba-alpha subunit vs. nr
Match: gi|1351635298|ref|XP_024083544.1| (gamma-aminobutyric acid receptor subunit beta isoform X9 [Cimex lectularius]) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 327/557 (58.71%), Postives = 382/557 (68.58%), Query Frame = 0 Query: 73 SNFADVNISALLDSFQKGYDKRVRPNYGGTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQKLVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSGSQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPSDQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNPGGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEIADDLT 629 S DVNISA+LDSF YDKRVRPNYGG PV VGVTMYVLSISS+SEV MDFTLD YFRQFW DPRL+F + G++ L VG+E+I IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G SV +S +VSLPQFKVLGHRQ+ +E SL+TGNYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+A+++ N + P GG PDH PKQ T+ V++ I S + P + H + Q P+ +L P H +R Q + T VR+ ++H H + + + G S ++P +P H L+ K+ K+ GI+ S IDKYSRI FP+ F+ FNLMYWIIYLH+SD +ADDL Sbjct: 38 SMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKLAQEQ-----NQKTEPHPPGGDPDHA--PKQ----------TRKKGHQVQMRDPSIISSYAATLPPSKAVHQERRQQMQQTRDPTSIYAA-------------TLPPPKP------VHPERRQQMQQ-----TEVRY-KLHDPKAHFKGGKLENTINGRAEEEVAGRSAIVIP--IPQHI-----LQPTKDYNKLYGITASGIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 545 HSP 2 Score: 88.5817 bits (218), Expect = 2.209e-14 Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 0 Query: 630 VHFKVHDPKMHCKGGSRENTISRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPPPPPPVPP-MVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMYWIIYQHLSDDVVEELL 766 V +K+HDPK H KGG ENTI+ GRA G P+P ++ P K+ NK++G++AS IDKYSR++FPV F+CF LMYWIIY H+SD V ++L+ Sbjct: 450 VRYKLHDPKAHFKGGKLENTIN-------------------------------------GRAEEEVAGRSAIVIPIPQHILQPT-----KDYNKLYGITASGIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLV 545 The following BLAST results are available for this feature:
BLAST of gaba-alpha subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of gaba-alpha subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of gaba-alpha subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1004_size71882:21314..50164+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1004_size71882-snap-gene-0.10 ID=maker-scaffold1004_size71882-snap-gene-0.10|Name=gaba-alpha subunit|organism=Tigriopus kingsejongensis|type=gene|length=28851bp|location=Sequence derived from alignment at scaffold1004_size71882:21314..50164+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gaba-alpha subunit' has the following synonyms
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