39s ribosomal protein mitochondrial precursor, maker-scaffold112_size353035-snap-gene-0.8 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000000599 (supercontig:LSalAtl2s:LSalAtl2s109:433216:433856:-1 gene:EMLSAG00000000599 transcript:EMLSAT00000000599 description:"maker-LSalAtl2s109-augustus-gene-4.31") HSP 1 Score: 172.94 bits (437), Expect = 1.463e-54 Identity = 95/178 (53.37%), Postives = 117/178 (65.73%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLPLKLHKNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRY--SYTQMWNAPNDWAENPTYPHRSDGII--KVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDF 214 MNQAE+ LV L K++ K KN LG RG+LDK+R VT LIV+ERI L TRLY ERLIS+A+ GD H TM +A+WWL SAVHKLF+VLVPRF DS S+T+++ AP NP + I V+EL+ +PFP YSNSRPN+ HIHNVLLSEAKK++ Sbjct: 1 MNQAEVGRLVRTLGVKLIAPKRIKNPLGYRGTLDKVRESVTDLIVDERIHLRTPRAQLTRLYAERLISEAIMNGDCHKETMRIASWWLXSHPSAVHKLFQVLVPRFGDSEKVESFTRIFKAPMREEYNPNKKYSGAHIFGHSVVELKKNPFPPLAYSNSRPNKKHIHNVLLSEAKKEY 178
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|75061918|sp|Q5RCA3.1|RM17_PONAB (RecName: Full=39S ribosomal protein L17, mitochondrial; Short=L17mt; Short=MRP-L17; Flags: Precursor) HSP 1 Score: 74.3294 bits (181), Expect = 3.157e-15 Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 0 Query: 67 LGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDFNVVGLAQALAEAESKSHEQSEATE 238 LGP + LR +T L+ +ERIE P + D R Y E+LI D GD + M MA +WL ++ + KLF+VL PR++D YT+M PN + + V+E +G+ P P R+ H LL++ + GL Q L++++ S+ S + Sbjct: 20 LGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI-DYGKLGDTNERAMRMADFWL-TEKDLIPKLFQVLAPRYKDQNGGYTRMRQIPNRSLDRAK--------MAVIEYKGNCLPPLPL----PRRDS-HLTLLNQL-----LQGLRQDLSQSQEASNHSSHTAQ 171
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|74752931|sp|Q9NRX2.1|RM17_HUMAN (RecName: Full=39S ribosomal protein L17, mitochondrial; Short=L17mt; Short=MRP-L17; AltName: Full=LYST-interacting protein 2; AltName: Full=Mitochondrial large ribosomal subunit protein bL17m; Flags: Precursor) HSP 1 Score: 73.1738 bits (178), Expect = 6.900e-15 Identity = 54/172 (31.40%), Postives = 83/172 (48.26%), Query Frame = 0 Query: 67 LGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDFNVVGLAQALAEAESKSHEQSEATE 238 LGP + LR +T L+ +ERIE P + D R Y E+LI D GD + M MA +WL ++ + KLF+VL PR++D YT+M PN + + V+E +G+ P P R+ H LL++ + GL Q L +++ S+ S + Sbjct: 20 LGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI-DYGKLGDTNERAMRMADFWL-TEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAK--------MAVIEYKGNCLPPLPL----PRRDS-HLTLLNQL-----LQGLRQDLRQSQEASNHSSHTAQ 171
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|81905675|sp|Q9D8P4.1|RM17_MOUSE (RecName: Full=39S ribosomal protein L17, mitochondrial; Short=L17mt; Short=MRP-L17; Flags: Precursor) HSP 1 Score: 71.2478 bits (173), Expect = 4.072e-14 Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0 Query: 67 LGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPN 161 LGP + LR +T L+ +ERIE + D R Y E+LI D GD + M MA +WL ++ + KLFKVL PRFQ +YT+M PN Sbjct: 20 LGPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLI-DYGKLGDTNERAMRMADFWL-TEKDLIPKLFKVLAPRFQGQNGNYTRMLQIPN 112
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|81892538|sp|Q6PDW6.1|RM17_RAT (RecName: Full=39S ribosomal protein L17, mitochondrial; Short=L17mt; Short=MRP-L17; Flags: Precursor) HSP 1 Score: 70.0922 bits (170), Expect = 9.816e-14 Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 0 Query: 67 LGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFP 188 LGP + LR +T L+ +ERIE + D R Y E+LI D GD + M MA +WL ++ + KLFKVL PRFQ +YT+M PN ++ + V+E +G+ P Sbjct: 20 LGPESRIHLLRNLLTGLVRHERIEATWARVDEMRGYAEKLI-DYGKLGDTNERAMRMADFWL-TEKDLIPKLFKVLAPRFQGQNGNYTRMLQIPNRKEQD-------RAKMAVIEYKGNCLP 132
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|114158573|sp|Q3T0L3.1|RM17_BOVIN (RecName: Full=39S ribosomal protein L17, mitochondrial; Short=L17mt; Short=MRP-L17; Flags: Precursor) HSP 1 Score: 65.855 bits (159), Expect = 3.698e-12 Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 67 LGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPN 161 LGP + L+ +T L+ +ERIE + D R Y E+LI D GD + M MA +WL ++ + KLF+VL PR+Q YT+M PN Sbjct: 20 LGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLI-DYGKLGDTNERAMRMADFWLT-EKDLIPKLFQVLAPRYQGQNGGYTRMLQIPN 112
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|157136085|ref|XP_001656763.1| (39S ribosomal protein L17, mitochondrial [Aedes aegypti] >gi|1218212116|ref|XP_021712794.1| 39S ribosomal protein L17, mitochondrial-like [Aedes aegypti] >gi|108881131|gb|EAT45356.1| AAEL003397-PA [Aedes aegypti]) HSP 1 Score: 160.614 bits (405), Expect = 9.784e-46 Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLPLKLH-KNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPT-YPHRSDGIIKVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDFNVVGLAQALAEAESK-SHEQSEATE 238 MNQAE+ L+S L+ V P + KNI GP G L+KLR+ VTAL+ +ERIEL D R Y ERLISDA+ +GD+H TMEMA +WL ++ VHKLFKVL PRF++ + S T+M+ AP ++ P Y R+ VLELRG+P+P N NRN +HNVLL EA+KDF A+ A+ ++ + E SE+ E Sbjct: 1 MNQAEVAKLMSQLKIAVRPRHRNLKNIDGPEGRLNKLRKTVTALVKHERIELNYQRADEARGYAERLISDAIRYGDRHQPTMEMADFWLT-EKQLVHKLFKVLAPRFEEYKVSATRMYKAPKEY---PGWYRKRA-----VLELRGNPYPAL-VQNLHQNRNLLHNVLLDEARKDFRKEKYAEIAAQIGAEPAKETSESEE 191
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1060233252|ref|XP_017842181.1| (PREDICTED: 39S ribosomal protein L17, mitochondrial [Drosophila busckii] >gi|924557959|gb|ALC42971.1| mRpL17 [Drosophila busckii]) HSP 1 Score: 160.999 bits (406), Expect = 1.352e-45 Identity = 95/188 (50.53%), Postives = 122/188 (64.89%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLPLKLH-KNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDF---NVVGLAQALA 224 MNQA++ L+S LR V P K H KN GP G L KLR+ VTAL+ +ERIEL + D R Y E LIS+A+ GD+H TMEMA +WL ++ VHKLFKVLVPR+++ SYT+M+ AP D+ P +R VLELRG+P+P NS+ NRN +HNVLL EA+K+F + LAQ LA Sbjct: 1 MNQADVSKLMSQLRIAVRPNKRHLKNADGPEGRLLKLRKTVTALVKHERIELFYNRADEARGYAELLISNAIRHGDRHKSTMEMADYWL-LEKQLVHKLFKVLVPRYENYNISYTRMFKAPRDY---PGIYYRKS----VLELRGNPYPVLTPDNSQ-NRNLLHNVLLDEARKEFRREKLTNLAQKLA 179
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1059392254|ref|XP_017770478.1| (PREDICTED: 39S ribosomal protein L17, mitochondrial [Nicrophorus vespilloides]) HSP 1 Score: 160.229 bits (404), Expect = 1.356e-45 Identity = 89/176 (50.57%), Postives = 117/176 (66.48%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLP-LKLHKNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIK-VLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDF 214 MNQA++ LVS LR KV P L+ +N GP L+KLR+ VTALI +ERIEL D R+Y ERLISDA+ +GD H TMEMA +WL ++ VHKLFKVL PR+Q+ S+++++ AP P+ D +K VLELRG+PFP +++ NRN IHNVLL EAKK++ Sbjct: 1 MNQADVSKLVSQLRIKVNPRLRKFRNPGGPEERLNKLRKTVTALIKHERIELNYPRADEARMYAERLISDAIRYGDCHKTTMEMADYWL-TEKQLVHKLFKVLAPRYQNYNVSFSRLYKAPR--------PYPGDKNLKAVLELRGNPFPSVT-PDTQSNRNLIHNVLLDEAKKEY 166
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1098634519|ref|XP_018784939.1| (PREDICTED: 39S ribosomal protein L17, mitochondrial [Bactrocera latifrons]) HSP 1 Score: 160.229 bits (404), Expect = 1.640e-45 Identity = 94/204 (46.08%), Postives = 129/204 (63.24%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLPLKLHKNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFPKF--EYSNSRPNRNHIHNVLLSEAKKDFNVVGLAQALAEAESKSHEQSE--ATEGN 240 MNQA++ L+S LR V P + +N GP G L KLR+ VTAL+ +ERIEL + D R Y E LIS+A+ +GD+H TME+A +WL ++ VHKLFKVLVPR ++ SYT+M+ AP D+ P +R VLELRG+P+P +Y+N NRN IHNVLL EA+KD+ LA+ + S+S +E +EG+ Sbjct: 1 MNQADVSKLMSQLRIAVKPHRNLRNPDGPEGRLLKLRKTVTALVKHERIELYYNRADEARGYAELLISNAIRYGDRHKATMELADYWL-LEKQLVHKLFKVLVPRLENCNVSYTRMYKAPRDY---PGMYYRKS----VLELRGNPYPSLLPDYTN---NRNLIHNVLLDEARKDYRREKLAELADKIASESAVNAEKVGSEGD 193
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|91080193|ref|XP_971209.1| (PREDICTED: 39S ribosomal protein L17, mitochondrial [Tribolium castaneum]) HSP 1 Score: 159.458 bits (402), Expect = 2.675e-45 Identity = 99/206 (48.06%), Postives = 123/206 (59.71%), Query Frame = 0 Query: 41 MNQAELQHLVSALRFKVLP-LKLHKNILGPRGSLDKLRRHVTALIVNERIELPASHGDHTRLYTERLISDAVTFGDKHVHTMEMATWWLDQDRSAVHKLFKVLVPRFQDSRYSYTQMWNAPNDWAENPTYPHRSDGIIKVLELRGHPFPKFEYSNSRPNRNHIHNVLLSEAKKDFNVVGLAQALAEAESKSHEQSEATEGNETEKR 245 MNQA++ LVS LR KV P L+ ++ GP LDKLR+ VTAL+ +ERIEL D +R+Y ERLISDA+ +GD H TMEMA +WL ++ VHKLFKVLVPRF + YT+M+ AP YP + VLEL+G+P+P N NRN IHNVLL EAKK + Q AE SK +A E N E R Sbjct: 1 MNQADISKLVSQLRIKVNPRLRKFRSPGGPEARLDKLRKTVTALVKHERIELNFPRADESRMYAERLISDAIRYGDCHKETMEMADYWL-VEKQLVHKLFKVLVPRFVNYNTCYTRMYKAPT------LYPETREKA--VLELKGNPYPSLLPENY-TNRNLIHNVLLDEAKKAYRT----QKYAEIASK----IDAAEKNVEETR 188 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 5
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold112_size353035:4030..5838- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold112_size353035-snap-gene-0.8 ID=maker-scaffold112_size353035-snap-gene-0.8|Name=39s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=1809bp|location=Sequence derived from alignment at scaffold112_size353035:4030..5838- (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial precursor' has the following synonyms
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