uroporphyrin-iii c-methyltransferase, maker-scaffold1185_size56580-snap-gene-0.14 (gene) Tigriopus kingsejongensis

Overview
Nameuroporphyrin-iii c-methyltransferase
Unique Namemaker-scaffold1185_size56580-snap-gene-0.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of uroporphyrin-iii c-methyltransferase vs. nr
Match: gi|1325282533|ref|XP_023325961.1| (uncharacterized protein LOC111699505 [Eurytemora affinis])

HSP 1 Score: 85.5001 bits (210), Expect = 9.930e-17
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 0 
Query:   29 NPWGHCDYSGQLLVNEDCSQGFHCI------GQDGSGCLKVCGPDERLVTTEGSH-FECHGKGSPAAKDALCPGVALERIVSPEKVGSNPLGTCRCDGELWVNKDCSQGFYCNGSLAEGGATKTCEQ 148
            N  G C+   QL +N+DC++GF+C+      G    GC+K C PDE L+   G + +EC  K      + +CPG         E  G+  +G C CDG+LW+N DC +GFYC+  +  GG   +C++
Sbjct:  213 NTLGTCECGKQLFINKDCTEGFYCMESGFPEGVKADGCIKSCRPDEILIVDVGKYDWECVPKSFSPGLNRICPGE-----FHVECPGNGDIGECECDGQLWINDDCRKGFYCSSKMPGGGQDISCKE 334
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BLAST of uroporphyrin-iii c-methyltransferase vs. nr
Match: gi|1325318056|ref|XP_023340777.1| (C-type lectin domain-containing protein 141-like [Eurytemora affinis])

HSP 1 Score: 67.3958 bits (163), Expect = 3.615e-11
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 0 
Query:   21 PGGQEVTENPWGHCDYSGQLLVNEDCSQGFHCI------GQDGSGCLKVCGPDERL-VTTEGSHFECHGKGSPAAKDALCPGVALERIVSPEKVGSNPLGTCRCDGELWVNKDC 127
            P   E   N  G C+   QL +N DC+QGF+C+      G +  GC+K C  DE L V  +   +EC  K  P A   LCPG       + E  G+  +  C+CDG+LW++  C
Sbjct:   51 PAVCEYGNNTLGICECGAQLFINNDCTQGFYCMETELPEGGNAQGCMKTCKSDEILQVNVKTYTWECVLKRQPGALPLLCPGS-----FNTECPGNGDIKDCQCDGQLWISDHC 159
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BLAST of uroporphyrin-iii c-methyltransferase vs. nr
Match: gi|1325318034|ref|XP_023340765.1| (uncharacterized protein LOC111710837 [Eurytemora affinis])

HSP 1 Score: 60.8474 bits (146), Expect = 1.138e-8
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 0 
Query:   54 GQDGSGCLKVCGPDERLVTTEGSH-FECHGKG-SPAAKDALCPGVALERIVSPEKVGSNPLGTCRCDGELWVNKDCSQGFYCNGSLAEGGATKTC 146
            G +  GC+K C PDE L+   G + +EC  K   P   + +CPG         E  G+  +G C CDG+LW++  C  GFYC+  +A  G    C
Sbjct:    8 GVNADGCIKTCRPDEILIVDVGKYDWECVPKSFRPDILNRICPGE-----FKVECPGNGDIGECECDGQLWIDDTCRNGFYCDSRMAGNGIDIKC 97
The following BLAST results are available for this feature:
BLAST of uroporphyrin-iii c-methyltransferase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of uroporphyrin-iii c-methyltransferase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of uroporphyrin-iii c-methyltransferase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 3
Match NameE-valueIdentityDescription
gi|1325282533|ref|XP_023325961.1|9.930e-1736.22uncharacterized protein LOC111699505 [Eurytemora a... [more]
gi|1325318056|ref|XP_023340777.1|3.615e-1135.96C-type lectin domain-containing protein 141-like [... [more]
gi|1325318034|ref|XP_023340765.1|1.138e-835.79uncharacterized protein LOC111710837 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1185_size56580supercontigscaffold1185_size56580:13463..13971 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:precorrin-2 dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1185_size56580-snap-gene-0.14-mRNA-1maker-scaffold1185_size56580-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1185_size56580:13463..13971-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1185_size56580-snap-gene-0.14 ID=maker-scaffold1185_size56580-snap-gene-0.14|Name=uroporphyrin-iii c-methyltransferase|organism=Tigriopus kingsejongensis|type=gene|length=509bp|location=Sequence derived from alignment at scaffold1185_size56580:13463..13971- (Tigriopus kingsejongensis)
ATGAGAACCCTTTGCCTCATCTTTGCTTTCCTTGCTCCAACGACACTAAG
CCTAGTTTGTCCTGGTGGTCAGGAAGTGACGGAAAATCCTTGGGGACACT
GCGATTACTCCGGACAACTTCTTGTCAACGAAGATTGCAGTCAAGGGTTC
CATTGCATCGGTCAAGATGGCAGCGGGTGTCTCAAGGTAGATTCGTCTTA
AAATACCGGCTTGGATTGCATCAATTTGATCAGCATAAATGCCTCAAATA
GGTCTGTGGACCAGACGAGCGCCTCGTGACCACCGAGGGTAGCCATTTTG
AGTGCCACGGGAAAGGAAGCCCAGCTGCCAAGGACGCTCTTTGTCCTGGA
GTAGCCTTGGAGAGGATTGTCAGCCCCGAGAAGGTGGGCAGCAACCCATT
AGGTACCTGTCGATGCGATGGCGAGCTTTGGGTCAACAAGGATTGTTCCC
AGGGATTCTATTGTAATGGATCACTGGCCGAAGGAGGCGCTACCAAGACA
TGTGAGCAG
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Synonyms
The feature 'uroporphyrin-iii c-methyltransferase' has the following synonyms
Synonym
Tk10353
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