inner centromere, maker-scaffold11_size778918-snap-gene-0.12 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of inner centromere vs. L. salmonis genes
Match: EMLSAG00000000740 (supercontig:LSalAtl2s:LSalAtl2s1119:100358:134995:1 gene:EMLSAG00000000740 transcript:EMLSAT00000000740 description:"maker-LSalAtl2s1119-augustus-gene-0.6") HSP 1 Score: 205.297 bits (521), Expect = 4.635e-56 Identity = 85/97 (87.63%), Postives = 93/97 (95.88%), Query Frame = 0
Query: 664 VRIPGPQVPPRNSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDEGLKFSKV 760
VR+PGPQVPPRN E + +LSVSGKKKCSHC+EELGRGAAMIIESLRL+YHLRCFQCCVCQ+QLGNG+AGTDVRVRNNKLHCQNCYSND+GLKFSKV
Sbjct: 751 VRVPGPQVPPRNMENPDRMLSVSGKKKCSHCREELGRGAAMIIESLRLYYHLRCFQCCVCQIQLGNGTAGTDVRVRNNKLHCQNCYSNDDGLKFSKV 847
BLAST of inner centromere vs. SwissProt
Match: gi|152032557|sp|Q3UH68.2|LIMC1_MOUSE (RecName: Full=LIM and calponin homology domains-containing protein 1) HSP 1 Score: 104.375 bits (259), Expect = 1.291e-21 Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCY 749
S+SGKK CS C LG+GAAMIIE+L L++H++CF+C +C+ QLG+ +GTDVR+RN L+C +CY
Sbjct: 980 SISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 1045
BLAST of inner centromere vs. SwissProt
Match: gi|296439483|sp|Q9UPQ0.4|LIMC1_HUMAN (RecName: Full=LIM and calponin homology domains-containing protein 1) HSP 1 Score: 103.219 bits (256), Expect = 3.053e-21 Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCY 749
S+SGKK CS C LG+GAAMIIE+L L++H++CF+C +C+ QLG+ +GTDVR+RN L+C +CY
Sbjct: 1006 SISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCY 1071
BLAST of inner centromere vs. SwissProt
Match: gi|308153585|sp|Q8WWI1.3|LMO7_HUMAN (RecName: Full=LIM domain only protein 7; Short=LMO-7; AltName: Full=F-box only protein 20; AltName: Full=LOMP) HSP 1 Score: 102.449 bits (254), Expect = 5.249e-21 Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCY 749
SVSGK+ CS+C LG+GAAMIIESL L YHL CF+C C+ LG S+G +VR+RN++L+C +CY
Sbjct: 1607 SVSGKRICSYCNNILGKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCY 1672
BLAST of inner centromere vs. SwissProt
Match: gi|123900563|sp|Q3KQW7.1|LIMC1_XENLA (RecName: Full=LIM and calponin homology domains-containing protein 1) HSP 1 Score: 101.679 bits (252), Expect = 7.672e-21 Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCY 749
SVSGKK CS C LG+GAAMIIE+L L++H++CF+C +C+ QLG+ + GTDVR+RN L+C +CY
Sbjct: 1006 SVSGKKLCSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDATTGTDVRIRNGLLNCNDCY 1071
BLAST of inner centromere vs. SwissProt
Match: gi|218511775|sp|O95171.2|SCEL_HUMAN (RecName: Full=Sciellin) HSP 1 Score: 59.6918 bits (143), Expect = 6.841e-8 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYS 750
SV + C++C++ LG MI++ L++ H CF+C +C+ L N AG + + +HC+ CYS
Sbjct: 614 SVIERDMCTYCRKPLGVETKMILDELQICCHSTCFKCEICKQPLENLQAGDSIWIYRQTIHCEPCYS 680
BLAST of inner centromere vs. SwissProt
Match: gi|85681893|sp|Q9EQG3.2|SCEL_MOUSE (RecName: Full=Sciellin) HSP 1 Score: 58.5362 bits (140), Expect = 1.333e-7 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0
Query: 684 SVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYS 750
SV + C++C++ LG MI++ L++ H CF+C +C+ L N AG + + +HC+ CYS
Sbjct: 578 SVIERDMCTYCRKPLGVETKMILDELQICCHSTCFKCEICKRPLENLQAGDSIWIYRQTIHCEPCYS 644
BLAST of inner centromere vs. nr
Match: gi|746868027|ref|XP_011065127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105152490 [Acromyrmex echinatior]) HSP 1 Score: 179.489 bits (454), Expect = 9.263e-43 Identity = 105/246 (42.68%), Postives = 135/246 (54.88%), Query Frame = 0
Query: 516 KKEASPIPNGQPRPYNQHWLVQEAEQRRLSELRPGQSPGSVHSGQPISSATPSP-NSSLSGHSPPVYENTAHTKQQVVQQYQQQPQQPAQPTQTQKQPVYNNVDDSWKTPSIAPQKAQKGYNKSESLYANLSNGPSPSIHSTHYPQRESVRIPGPQVPPRNSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDEGLKFSKV 760
++ S +P G QHWL+QEAEQRR++E R +SP QP + T P N+ + S P+ ++ T Q VQ Q+ +P T+++P V + +PQ + TH P NS Q +LSVSGKKKCSHC EELGRGAAMIIESLRLFYH+ CF+CCVC V+LG+G GTDVRVRN+KLHC NCYS+D+G+KFS V
Sbjct: 1608 QRRKSDVPRGANDVNYQHWLIQEAEQRRINE-RNQRSPA--RKSQPHVTGTSVPYNAPIRTDSKPLPDSIIQTLTQRVQSKTQE-----KPLLTRRRP--EQVQEHLTVQHQSPQYTLQS-------------------QKTHTP------------IANNSGNQEKMLSVSGKKKCSHCGEELGRGAAMIIESLRLFYHMECFKCCVCHVRLGDGLMGTDVRVRNHKLHCHNCYSSDDGVKFSCV 1812
BLAST of inner centromere vs. nr
Match: gi|751199767|ref|XP_011158450.1| (PREDICTED: calponin homology domain-containing protein DDB_G0272472 isoform X1 [Solenopsis invicta] >gi|751199769|ref|XP_011158459.1| PREDICTED: calponin homology domain-containing protein DDB_G0272472 isoform X1 [Solenopsis invicta] >gi|751199771|ref|XP_011158468.1| PREDICTED: calponin homology domain-containing protein DDB_G0272472 isoform X1 [Solenopsis invicta]) HSP 1 Score: 179.489 bits (454), Expect = 9.268e-43 Identity = 104/248 (41.94%), Postives = 141/248 (56.85%), Query Frame = 0
Query: 516 KKEASPIPNGQPRPYNQHWLVQEAEQRRLSELRPGQSPGSVHSGQPISSATPSP-NSSLSGHSPPVYENTAHTKQQVVQQYQQQPQQPAQPTQTQKQP--VYNNVDDSWKTPSIAPQKAQKGYNKSESLYANLSNGPSPSIHSTHYPQRESVRIPGPQVPPRNSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDEGLKFSKV 760
++ S +P G QHWL+QEAEQRR++E R +SP QP + T P N+ + S P+ ++ T Q VQ Q+ +P T+++P V+N + ++ Q Q ++ +A ++N N+ Q +LSVSGKKKCSHC EELGRGAAMIIESLRLFYH+ CF+CCVC V+LG+G GTDVRVRN+KLHC NCYS+D+G+KFS V
Sbjct: 1607 QRRKSDVPRGAHDVNYQHWLIQEAEQRRINE-RNQRSPA--RKSQPHVTGTSVPYNAPIRADSKPLPDSIIQTLTQRVQNKTQE-----KPLLTRRRPEQVHNQ-----EHLTVQHQSPQYTLQSQKTQHAPIAN---------------------------NNGNQEKMLSVSGKKKCSHCGEELGRGAAMIIESLRLFYHMECFKCCVCHVRLGDGLMGTDVRVRNHKLHCHNCYSSDDGVKFSCV 1814
BLAST of inner centromere vs. nr
Match: gi|751199773|ref|XP_011158477.1| (PREDICTED: calponin homology domain-containing protein DDB_G0272472 isoform X2 [Solenopsis invicta]) HSP 1 Score: 179.489 bits (454), Expect = 9.518e-43 Identity = 104/248 (41.94%), Postives = 141/248 (56.85%), Query Frame = 0
Query: 516 KKEASPIPNGQPRPYNQHWLVQEAEQRRLSELRPGQSPGSVHSGQPISSATPSP-NSSLSGHSPPVYENTAHTKQQVVQQYQQQPQQPAQPTQTQKQP--VYNNVDDSWKTPSIAPQKAQKGYNKSESLYANLSNGPSPSIHSTHYPQRESVRIPGPQVPPRNSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDEGLKFSKV 760
++ S +P G QHWL+QEAEQRR++E R +SP QP + T P N+ + S P+ ++ T Q VQ Q+ +P T+++P V+N + ++ Q Q ++ +A ++N N+ Q +LSVSGKKKCSHC EELGRGAAMIIESLRLFYH+ CF+CCVC V+LG+G GTDVRVRN+KLHC NCYS+D+G+KFS V
Sbjct: 1606 QRRKSDVPRGAHDVNYQHWLIQEAEQRRINE-RNQRSPA--RKSQPHVTGTSVPYNAPIRADSKPLPDSIIQTLTQRVQNKTQE-----KPLLTRRRPEQVHNQ-----EHLTVQHQSPQYTLQSQKTQHAPIAN---------------------------NNGNQEKMLSVSGKKKCSHCGEELGRGAAMIIESLRLFYHMECFKCCVCHVRLGDGLMGTDVRVRNHKLHCHNCYSSDDGVKFSCV 1813
BLAST of inner centromere vs. nr
Match: gi|1316179617|ref|XP_023235384.1| (trichohyalin-like isoform X1 [Centruroides sculpturatus]) HSP 1 Score: 177.948 bits (450), Expect = 1.023e-42 Identity = 106/235 (45.11%), Postives = 132/235 (56.17%), Query Frame = 0
Query: 530 YNQ-HWLVQEAEQRRLSELRPGQSPGSVHSGQPISSATPSPNSSLSGHSPPVYENTAHTKQQVVQQYQQQPQQPAQPTQTQKQPVYNNVDDSWKTPSIAPQKAQKGYNKSESLYANLSNGPSPSIHSTHYPQRESVRIPGPQVPPR--NSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDE-GLKFSKV 760
YNQ HWLVQEAE RR++E + Q + S + S+ S + N ++ ++ Q+QP P+ P +VD W + G L +G ++ P R+ P PPR NS Q LLSVSG+K+CSHC EELG GAAMIIESL+LFYH++CF CCVCQ QLGNGS GTDVRVRNNKLHCQ+CYSNDE GLKFS+V
Sbjct: 678 YNQYHWLVQEAEMRRITEQKERQCQFA------------SEHRSIHSRSSGITLN-HQSQTNMLHHNQKQPLNHITPS---AHPCSYSVDHQWNRSNNTTNGRHSG---------QLKDGKQCFGYTK--PHRD----ISPTKPPRSRNSNTQEHLLSVSGRKRCSHCGEELGHGAAMIIESLQLFYHIQCFCCCVCQAQLGNGSCGTDVRVRNNKLHCQHCYSNDEAGLKFSQV 881
BLAST of inner centromere vs. nr
Match: gi|1316179619|ref|XP_023235385.1| (trichohyalin-like isoform X2 [Centruroides sculpturatus]) HSP 1 Score: 177.563 bits (449), Expect = 1.074e-42 Identity = 106/235 (45.11%), Postives = 132/235 (56.17%), Query Frame = 0
Query: 530 YNQ-HWLVQEAEQRRLSELRPGQSPGSVHSGQPISSATPSPNSSLSGHSPPVYENTAHTKQQVVQQYQQQPQQPAQPTQTQKQPVYNNVDDSWKTPSIAPQKAQKGYNKSESLYANLSNGPSPSIHSTHYPQRESVRIPGPQVPPR--NSEPQNSLLSVSGKKKCSHCKEELGRGAAMIIESLRLFYHLRCFQCCVCQVQLGNGSAGTDVRVRNNKLHCQNCYSNDE-GLKFSKV 760
YNQ HWLVQEAE RR++E + Q + S + S+ S + N ++ ++ Q+QP P+ P +VD W + G L +G ++ P R+ P PPR NS Q LLSVSG+K+CSHC EELG GAAMIIESL+LFYH++CF CCVCQ QLGNGS GTDVRVRNNKLHCQ+CYSNDE GLKFS+V
Sbjct: 621 YNQYHWLVQEAEMRRITEQKERQCQFA------------SEHRSIHSRSSGITLN-HQSQTNMLHHNQKQPLNHITPS---AHPCSYSVDHQWNRSNNTTNGRHSG---------QLKDGKQCFGYTK--PHRD----ISPTKPPRSRNSNTQEHLLSVSGRKRCSHCGEELGHGAAMIIESLQLFYHIQCFCCCVCQAQLGNGSCGTDVRVRNNKLHCQHCYSNDEAGLKFSQV 824 The following BLAST results are available for this feature:
BLAST of inner centromere vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of inner centromere vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 6
BLAST of inner centromere vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold11_size778918:48736..61893+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold11_size778918-snap-gene-0.12 ID=maker-scaffold11_size778918-snap-gene-0.12|Name=inner centromere|organism=Tigriopus kingsejongensis|type=gene|length=13158bp|location=Sequence derived from alignment at scaffold11_size778918:48736..61893+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'inner centromere' has the following synonyms
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