60s ribosomal protein l9, maker-scaffold11_size778918-snap-gene-6.45 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 60s ribosomal protein l9 vs. L. salmonis genes
Match: EMLSAG00000008645 (supercontig:LSalAtl2s:LSalAtl2s534:20104:25933:1 gene:EMLSAG00000008645 transcript:EMLSAT00000008645 description:"maker-LSalAtl2s534-augustus-gene-0.6") HSP 1 Score: 332.028 bits (850), Expect = 8.651e-112 Identity = 153/190 (80.53%), Postives = 177/190 (93.16%), Query Frame = 0 Query: 10 MKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLKVED 199 MK++NTHQ+V VPEGV +VKSR ++V G RG LVKSF+HLA+DIFMPN KT+RVEKWFGKRKELAAVRTVCSHI+N+ GVT GYKYKMRAVYAHFPINC++TE G+L+EVRNFLGEK+IR+VRMA+GVKCENSK+QKDEL++TGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV+ +E+ Sbjct: 458 MKVINTHQIVTVPEGVTCSVKSRTITVTGVRGKLVKSFKHLAVDIFMPNKKTLRVEKWFGKRKELAAVRTVCSHISNMFKGVTYGYKYKMRAVYAHFPINCSITETGTLVEVRNFLGEKYIRKVRMAEGVKCENSKEQKDELILTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVAMEE 647
BLAST of 60s ribosomal protein l9 vs. SwissProt
Match: gi|3914761|sp|O02376.1|RL9_HAECO (RecName: Full=60S ribosomal protein L9) HSP 1 Score: 156.377 bits (394), Expect = 6.064e-48 Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = 0 Query: 10 MKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRV 133 MKL+ ++ V P+GV TVK+RVV V GPRG+L + FRHL +++ +RV KWFG RKE+AA+RTVCSHI N+I GVT G++YKMR+VYAHFPIN + +GG +E+RNFLGEK +R V Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPV 124
BLAST of 60s ribosomal protein l9 vs. SwissProt
Match: gi|166220026|sp|A2BMD5.1|RL6_HYPBU (RecName: Full=50S ribosomal protein L6) HSP 1 Score: 145.591 bits (366), Expect = 4.030e-43 Identity = 81/186 (43.55%), Postives = 117/186 (62.90%), Query Frame = 0 Query: 11 KLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFM-----PNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEK 191 K + + V+VPEGV+V++ V+VKGP+G L + F H A +I + K V VE +F R+ A V T+ +HI N+I GVT G++YK++ VY+HFP+ V G + + NFLGEK R ++ GV K QKD+++V G IEAV Q+AA I+Q+T VK+KD R F+DG+Y+ EK Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSH-ARNIVIRLDEDEEGKKVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQ--GDKVVIENFLGEKAPRIAKIMPGVTV---KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182
BLAST of 60s ribosomal protein l9 vs. SwissProt
Match: gi|74506508|sp|Q5JJG4.1|RL6_THEKO (RecName: Full=50S ribosomal protein L6) HSP 1 Score: 135.576 bits (340), Expect = 3.702e-39 Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = 0 Query: 19 VKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEK 191 +++PEGV+VTV+ V VKGP+G L + ++ + IF + K V + K F ++K++A VRT +HI N+I GVT G+KY+++ VY+HFP+ V G + + NFLGEK RR ++ GV K + E+ V G EAV Q+AA I+Q+T + D R F DG+Y+ EK Sbjct: 11 IEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQ--GDEVVIENFLGEKNPRRAKILPGVTV---KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of 60s ribosomal protein l9 vs. SwissProt
Match: gi|226733609|sp|B6YSN0.1|RL6_THEON (RecName: Full=50S ribosomal protein L6) HSP 1 Score: 134.42 bits (337), Expect = 8.075e-39 Identity = 72/173 (41.62%), Postives = 108/173 (62.43%), Query Frame = 0 Query: 19 VKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEK 191 V++PEGV+VT++ VV V+GP+G L + ++ + IF + K V + K F ++K++A RT +HI N+I GVT G+ YK++ VY+HFP+ V G + + NFLGEK RR ++ GV K E++V G EAV Q+AA I+Q+T + D R F DG+Y+ EK Sbjct: 11 VEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIFTEDGKVV-IYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQ--GDEVVIENFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of 60s ribosomal protein l9 vs. SwissProt
Match: gi|6685888|sp|Q9YF91.1|RL6_AERPE (RecName: Full=50S ribosomal protein L6) HSP 1 Score: 134.035 bits (336), Expect = 1.215e-38 Identity = 71/176 (40.34%), Postives = 109/176 (61.93%), Query Frame = 0 Query: 19 VKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 194 V+VPEGV V++ V V GP+G + + F H + +V VE +F K ++ A V + HI N+I GV G++YK++ +Y+HFPIN V EG I + NFLGEK +R R+ GVK + + +++V G +E V+Q+AA I+ +T VK+KD RKF+DG+Y+ E+ + Sbjct: 11 VEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNSVVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKVQV---KGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
BLAST of 60s ribosomal protein l9 vs. nr
Match: gi|509391772|gb|AGN29667.1| (60S ribosomal protein L9 [Acartia pacifica] >gi|961375282|gb|ALS04385.1| 60S ribosomal protein L9 [Acartia pacifica] >gi|961375284|gb|ALS04386.1| 60S ribosomal protein L9 [Acartia pacifica]) HSP 1 Score: 290.041 bits (741), Expect = 1.402e-97 Identity = 135/189 (71.43%), Postives = 162/189 (85.71%), Query Frame = 0 Query: 10 MKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLKVE 198 MK +N QLVKVPEGV+ +VK+ VV+V G RG L K F+HLALDI+M N KT++VEKWFGK+K++AAVRTVCSHI N+ GVT G++YKMRAVYAHFP+NC +TE GSL+EVRNFLGEK+IR+V+MA GV ENSK QKDEL+V+GNSIE VS+SAALIQQ T VKNKDIRKFLDG+YVSEK TV++ E Sbjct: 1 MKEINNFQLVKVPEGVEASVKAGVVTVSGSRGKLTKGFKHLALDIYMVNKKTIKVEKWFGKKKQIAAVRTVCSHIENMFKGVTLGFQYKMRAVYAHFPLNCVITEKGSLVEVRNFLGEKYIRKVQMAPGVTVENSKAQKDELIVSGNSIEDVSKSAALIQQCTAVKNKDIRKFLDGMYVSEKGTVIQAE 189
BLAST of 60s ribosomal protein l9 vs. nr
Match: gi|987901419|ref|XP_015437629.1| (PREDICTED: 60S ribosomal protein L9 isoform X1 [Dufourea novaeangliae]) HSP 1 Score: 290.812 bits (743), Expect = 1.446e-97 Identity = 136/191 (71.20%), Postives = 164/191 (85.86%), Query Frame = 0 Query: 8 AKMKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLKVE 198 +MK + T+Q VK+PEG+ VTVKSR+V+VKGPRG L +SF+HLALDI M +P+ ++VEKWFG +KELAAVRTVCSHI N++ GVT GY+YKMRAVYAHFPINC TE ++IE+RNFLGEK+IRRV+MA GV NS QKDEL++ GNS+E VS+SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV++ E Sbjct: 12 CRMKQIVTNQTVKIPEGLTVTVKSRLVTVKGPRGILKRSFKHLALDIRMISPRILKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGYQYKMRAVYAHFPINCVTTESNTVIEIRNFLGEKYIRRVKMAPGVTVTNSAKQKDELIIEGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQEE 202
BLAST of 60s ribosomal protein l9 vs. nr
Match: gi|815918616|ref|XP_012244330.1| (60S ribosomal protein L9 isoform X1 [Bombus impatiens] >gi|1185575385|ref|XP_012165298.2| 60S ribosomal protein L9 isoform X1 [Bombus terrestris]) HSP 1 Score: 290.426 bits (742), Expect = 1.460e-97 Identity = 135/188 (71.81%), Postives = 164/188 (87.23%), Query Frame = 0 Query: 9 KMKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLK 196 +MK + T+Q VK+PEG+ VTVKSR+V+VKGPRG L +SF+HLALDI M +P+ ++VEKWFG +KELAAVRTVCSHI N++ GVT GY+YKMRAVYAHFPINC +TE ++IE+RNFLGEK+IRRV+MA GV NS QKDEL++ GNS+E VS+SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV++ Sbjct: 4 RMKQIVTNQTVKIPEGLTVTVKSRLVTVKGPRGVLKRSFKHLALDIRMVSPRLLKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGYQYKMRAVYAHFPINCVITENNTVIEIRNFLGEKYIRRVKMAPGVTVANSAKQKDELIIEGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQ 191
BLAST of 60s ribosomal protein l9 vs. nr
Match: gi|340715649|ref|XP_003396322.1| (60S ribosomal protein L9 isoform X2 [Bombus terrestris] >gi|350417930|ref|XP_003491650.1| 60S ribosomal protein L9 isoform X2 [Bombus impatiens]) HSP 1 Score: 290.041 bits (741), Expect = 1.585e-97 Identity = 135/187 (72.19%), Postives = 163/187 (87.17%), Query Frame = 0 Query: 10 MKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLK 196 MK + T+Q VK+PEG+ VTVKSR+V+VKGPRG L +SF+HLALDI M +P+ ++VEKWFG +KELAAVRTVCSHI N++ GVT GY+YKMRAVYAHFPINC +TE ++IE+RNFLGEK+IRRV+MA GV NS QKDEL++ GNS+E VS+SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV++ Sbjct: 1 MKQIVTNQTVKIPEGLTVTVKSRLVTVKGPRGVLKRSFKHLALDIRMVSPRLLKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGYQYKMRAVYAHFPINCVITENNTVIEIRNFLGEKYIRRVKMAPGVTVANSAKQKDELIIEGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQ 187
BLAST of 60s ribosomal protein l9 vs. nr
Match: gi|987901421|ref|XP_015437637.1| (PREDICTED: 60S ribosomal protein L9 isoform X2 [Dufourea novaeangliae] >gi|1016157704|gb|KZC04866.1| 60S ribosomal protein L9 [Dufourea novaeangliae]) HSP 1 Score: 290.041 bits (741), Expect = 1.600e-97 Identity = 136/189 (71.96%), Postives = 163/189 (86.24%), Query Frame = 0 Query: 10 MKLLNTHQLVKVPEGVDVTVKSRVVSVKGPRGSLVKSFRHLALDIFMPNPKTVRVEKWFGKRKELAAVRTVCSHITNLINGVTSGYKYKMRAVYAHFPINCAVTEGGSLIEVRNFLGEKFIRRVRMADGVKCENSKDQKDELVVTGNSIEAVSQSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVLKVE 198 MK + T+Q VK+PEG+ VTVKSR+V+VKGPRG L +SF+HLALDI M +P+ ++VEKWFG +KELAAVRTVCSHI N++ GVT GY+YKMRAVYAHFPINC TE ++IE+RNFLGEK+IRRV+MA GV NS QKDEL++ GNS+E VS+SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV++ E Sbjct: 1 MKQIVTNQTVKIPEGLTVTVKSRLVTVKGPRGILKRSFKHLALDIRMISPRILKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGYQYKMRAVYAHFPINCVTTESNTVIEIRNFLGEKYIRRVKMAPGVTVTNSAKQKDELIIEGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQEE 189 The following BLAST results are available for this feature:
BLAST of 60s ribosomal protein l9 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 60s ribosomal protein l9 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of 60s ribosomal protein l9 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold11_size778918:678002..679211+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold11_size778918-snap-gene-6.45 ID=maker-scaffold11_size778918-snap-gene-6.45|Name=60s ribosomal protein l9|organism=Tigriopus kingsejongensis|type=gene|length=1210bp|location=Sequence derived from alignment at scaffold11_size778918:678002..679211+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '60s ribosomal protein l9' has the following synonyms
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