60s ribosomal protein l18a, maker-scaffold1207_size55689-snap-gene-0.13 (gene) Tigriopus kingsejongensis

Overview
Name60s ribosomal protein l18a
Unique Namemaker-scaffold1207_size55689-snap-gene-0.13
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 60s ribosomal protein l18a vs. L. salmonis genes
Match: EMLSAG00000009463 (supercontig:LSalAtl2s:LSalAtl2s60:129351:130208:-1 gene:EMLSAG00000009463 transcript:EMLSAT00000009463 description:"maker-LSalAtl2s60-augustus-gene-1.19")

HSP 1 Score: 300.056 bits (767), Expect = 5.267e-106
Identity = 140/175 (80.00%), Postives = 158/175 (90.29%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYF 175
            MRA G LKEY VIGRKLPT +E  T LYRM+IFAPD VVAKSRFWYFLRQLRKFKKTTGEIVSV+ I E++PL++KNFGIWLRYDSRSGTHNMYREYRDL VS A+TQCYRDMGARHRARAH+IQII+VEPV +S  RRP+V+QMHDSKI+FPL SRVQK GGS+FKA+RP+TY+
Sbjct:    1 MRAKGNLKEYCVIGRKLPTEKEQVTSLYRMRIFAPDDVVAKSRFWYFLRQLRKFKKTTGEIVSVKLIKEKRPLRVKNFGIWLRYDSRSGTHNMYREYRDLNVSDAVTQCYRDMGARHRARAHSIQIIKVEPVHSSVCRRPLVKQMHDSKIRFPLPSRVQKSGGSLFKARRPNTYY 175          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|857336418|sp|P0CT68.1|RL20A_SCHPO (RecName: Full=60S ribosomal protein L20-A; AltName: Full=YL17 >gi|857336470|sp|P0CT69.1|RL20B_SCHPO RecName: Full=60S ribosomal protein L20-B; AltName: Full=YL17)

HSP 1 Score: 185.652 bits (470), Expect = 2.691e-59
Identity = 92/175 (52.57%), Postives = 121/175 (69.14%), Query Frame = 0
Query:    6 TLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASK-TRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTYF 175
             LKEY+V+GRK+PT  EP   L+RM++FAP++ VAKSR+WYFL+ + K KK TGEIV++ EI E KPLK K FGIW+RYDSRSGTHNMY+E+RD T   A+   Y DM ARHRAR  +I+I++V  V   +  RR  V+Q+ +  +KFPL  R    V   G  +F   RP T++
Sbjct:    2 ALKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|75154179|sp|Q8L7K0.1|R18A1_ARATH (RecName: Full=60S ribosomal protein L18a-1)

HSP 1 Score: 181.03 bits (458), Expect = 1.495e-57
Identity = 82/172 (47.67%), Postives = 122/172 (70.93%), Query Frame = 0
Query:    7 LKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTY 174
            L +Y+V+GR LPT ++ +  +YRMK++A ++V+AKS+FWY+LR+ +K KK+ G+++++ EI E+ P  IKNFGIWLRY SR+G HNMY+EYRD T++ A+ Q Y +M +RHR R   IQII+   V AS  +R   +Q H+SKIKFPL  R      ++  + FKA +P+ +
Sbjct:    6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|21431842|sp|P51418.2|R18A2_ARATH (RecName: Full=60S ribosomal protein L18a-2)

HSP 1 Score: 177.948 bits (450), Expect = 2.699e-56
Identity = 81/170 (47.65%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    9 EYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTY 174
            +Y+V+GR LPT ++ +  +YRMK++A ++V AKS+FWYFLR+L+K KK+ G+++++ EI E+ P  IKNFGIWLRY SR+G HNMY+EYRD T++ A+ Q Y +M +RHR R   IQII+   V A   +R   +Q H+SKIKFPL  R      ++  + +KA +P+ +
Sbjct:    8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLF 177          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|21362874|sp|Q9ATF5.1|RL18A_CASSA (RecName: Full=60S ribosomal protein L18a)

HSP 1 Score: 176.792 bits (447), Expect = 6.826e-56
Identity = 80/170 (47.06%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    9 EYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTY 174
            +Y+V+GR LP+  +    +YRMK++A ++V AKS+FWYFLR+L+K KK+ G+++++ EI E+ P KIKN+GIWLRY SR+G HNMY+EYRD T++ A+ Q Y +M +RHR R   IQII+   + A   +R   +Q H+SKIKFPL +R      ++  + +KA RP+ +
Sbjct:    8 QYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLF 177          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|21362875|sp|Q9LUD4.1|R18A3_ARATH (RecName: Full=60S ribosomal protein L18a-3)

HSP 1 Score: 176.022 bits (445), Expect = 1.582e-55
Identity = 78/170 (45.88%), Postives = 117/170 (68.82%), Query Frame = 0
Query:    9 EYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTY 174
            +Y+V+GR LPT  +    +YRMK++  ++V AKS+FWYF+R+L+K KK+ G+++++ EI E+ P  IKN+GIWLRY SR+G HNMY+EYRD T++  + Q Y +M +RHR R   IQII+   V A   +R I +Q H+SKIKFPL  R      ++  + +KA +P+ +
Sbjct:    8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLF 177          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|21362867|sp|Q943F3.1|RL18A_ORYSJ (RecName: Full=60S ribosomal protein L18a)

HSP 1 Score: 173.326 bits (438), Expect = 1.926e-54
Identity = 81/170 (47.65%), Postives = 115/170 (67.65%), Query Frame = 0
Query:    9 EYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSR----VQKRGGSMFKAKRPDTY 174
            +Y+V+GR LPT  +    +YRMK++A ++V AKS+FWYFLR+L+K KK+ G+I+++ EI E+ P  IKN+GIWLRY SR+G HNMY+EYRD T++ A+ Q Y +M +RHR R   IQII+   V     +R   +Q H S IKFPL  R      ++  + FKA RP+ +
Sbjct:    8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177          
BLAST of 60s ribosomal protein l18a vs. SwissProt
Match: gi|353678069|sp|P0DJ18.1|RL18A_TETTH (RecName: Full=60S ribosomal protein L18a)

HSP 1 Score: 138.272 bits (347), Expect = 1.312e-40
Identity = 64/172 (37.21%), Postives = 109/172 (63.37%), Query Frame = 0
Query:    7 LKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRV----QKRGGSMFKAKRPDTY 174
            +++Y V   +LP  +  +  + +M++FA D+V AK++FWY +R+L K K++ G I+SV EI E+    +K +GI L+Y SR+  HNMY+EYRD++++ A++Q  +DM   HRA+   IQIIR   +     +RP    M ++ +KFP+   +    +K+  +++KA RP T+
Sbjct:   18 VRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|1325321570|ref|XP_023342598.1| (60S ribosomal protein L18a-like [Eurytemora affinis])

HSP 1 Score: 308.916 bits (790), Expect = 1.591e-105
Identity = 147/176 (83.52%), Postives = 156/176 (88.64%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A GTLKEY VIGRKLPT  EP TPLYRM+IFA D VVA+SRFWYFLRQLRKFKKTTGEIVSVEEI E+ PLKIKNFGIWLRYDSRSGTHNMYREYRDLTV+ AITQCYRDMGARHRARAHAIQIIR EPVAA K RRP+V Q HDSKIKFPL  RVQK+GG+M +A RP TYFQ
Sbjct:    1 MKAKGTLKEYTVIGRKLPTEAEPVTPLYRMRIFATDPVVARSRFWYFLRQLRKFKKTTGEIVSVEEIREKNPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVNGAITQCYRDMGARHRARAHAIQIIRCEPVAAGKCRRPLVTQTHDSKIKFPLPRRVQKQGGAMVQANRPSTYFQ 176          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|1325257850|ref|XP_023324577.1| (60S ribosomal protein L18a-like [Eurytemora affinis])

HSP 1 Score: 308.145 bits (788), Expect = 3.140e-105
Identity = 147/176 (83.52%), Postives = 156/176 (88.64%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A GTLKEY VIGRKLPT  EP TPLYRM+IFA D VVA+SRFWYFLRQLRKFKKTTGEIVSVEEI E+ PLKIKNFGIWLRYDSRSGTHNMYREYRDLTV+ AITQCYRDMGARHRARAHAIQIIR EPVAA K RRP+V Q HDSKIKFPL  RVQK+GG+M +A RP TYFQ
Sbjct:    7 MKAKGTLKEYTVIGRKLPTEVEPVTPLYRMRIFATDPVVARSRFWYFLRQLRKFKKTTGEIVSVEEIREKNPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVNGAITQCYRDMGARHRARAHAIQIIRCEPVAAGKCRRPLVTQTHDSKIKFPLPRRVQKQGGAMVQANRPSTYFQ 182          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|225717860|gb|ACO14776.1| (60S ribosomal protein L18a [Caligus clemensi])

HSP 1 Score: 307.375 bits (786), Expect = 5.202e-105
Identity = 144/175 (82.29%), Postives = 160/175 (91.43%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYF 175
            MRA GTLKEY VIGRKLPT +E  TPLYRM+IFAPD VVAKSRFWYFLRQLRKFKKTTGEIVSV+ I E+KPLK+KNFGIWLRYDSRSGTHNMYREYRDL VS A+TQCYRDMGARHRARAH+IQII+VEPV+++  RRP+V+QMHDSKI+FPL SRVQK GGS+FKA RP+TYF
Sbjct:    1 MRAKGTLKEYCVIGRKLPTEKESVTPLYRMRIFAPDVVVAKSRFWYFLRQLRKFKKTTGEIVSVQLIREKKPLKVKNFGIWLRYDSRSGTHNMYREYRDLNVSDAVTQCYRDMGARHRARAHSIQIIKVEPVSSTVCRRPLVKQMHDSKIRFPLPSRVQKSGGSLFKAHRPNTYF 175          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|961376226|gb|ALS04857.1| (60S ribosomal protein L18a [Pseudodiaptomus poplesia] >gi|961376316|gb|ALS04902.1| 60S ribosomal protein L18a [Pseudodiaptomus poplesia])

HSP 1 Score: 304.679 bits (779), Expect = 6.482e-104
Identity = 143/176 (81.25%), Postives = 156/176 (88.64%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A+GTLKEYRVIGRKLPT  EP TPLY+M+IFA D VVAKSRFWYFLRQLRKFKKTTGEIVSVEEI E+ PLK+KNFGIWLRYDSRSGTHNMYREYRD+TV+ AITQCYRDMGARHRARAH+IQIIR E VAASK RRP++ Q HDSKIKFPL  RVQ+  GS+ KA RP TYFQ
Sbjct:    1 MKANGTLKEYRVIGRKLPTEAEPVTPLYKMRIFATDPVVAKSRFWYFLRQLRKFKKTTGEIVSVEEIREKNPLKVKNFGIWLRYDSRSGTHNMYREYRDMTVNGAITQCYRDMGARHRARAHSIQIIRCETVAASKCRRPLIVQTHDSKIKFPLAKRVQRPSGSLVKANRPSTYFQ 176          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|961376588|gb|ALS05038.1| (60S ribosomal protein L18a [Centropages dorsispinatus])

HSP 1 Score: 303.138 bits (775), Expect = 2.881e-103
Identity = 144/176 (81.82%), Postives = 154/176 (87.50%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A GTLKEY VIGRKLPT  EP TPLY+M+IFA D VVAKSRFWYFLRQLRKFKKTTGEIVSVEE+ E+ PLKIKNFGIWLRYDSRSGTHNMYREYRDLTV+ AITQCYRDMGARHRARAHAIQIIR EPVAA K RRP+V Q HDSKIKFPL  RV K GG + +A RP+TYFQ
Sbjct:    1 MKAKGTLKEYTVIGRKLPTEAEPVTPLYKMRIFATDPVVAKSRFWYFLRQLRKFKKTTGEIVSVEEVKEKNPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVNGAITQCYRDMGARHRARAHAIQIIRCEPVAAGKCRRPLVTQPHDSKIKFPLPRRVMKPGGGLVQANRPNTYFQ 176          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|1148368809|gb|AQS22647.1| (60S ribosomal protein L18a [Pseudodiaptomus poplesia])

HSP 1 Score: 302.368 bits (773), Expect = 5.442e-103
Identity = 142/176 (80.68%), Postives = 156/176 (88.64%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A+GTLKEYRVIGRKLPT  EP TPLY+M+IFA D VVAKSRFWYFLRQLRKFKKTTGEIVSVEEI E+ PLK+KNFGIWLRYDSRSGTHNMYREYRD+TV+ AITQCYRD+GARHRARAH+IQIIR E VAASK RRP++ Q HDSKIKFPL  RVQ+  GS+ KA RP TYFQ
Sbjct:    1 MKANGTLKEYRVIGRKLPTEAEPVTPLYKMRIFATDPVVAKSRFWYFLRQLRKFKKTTGEIVSVEEIREKNPLKVKNFGIWLRYDSRSGTHNMYREYRDMTVNGAITQCYRDLGARHRARAHSIQIIRCETVAASKCRRPLIVQTHDSKIKFPLAKRVQRPSGSLVKANRPPTYFQ 176          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|290562738|gb|ADD38764.1| (60S ribosomal protein L18a [Lepeophtheirus salmonis])

HSP 1 Score: 297.36 bits (760), Expect = 5.213e-101
Identity = 138/175 (78.86%), Postives = 157/175 (89.71%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYF 175
            MRA G LKEY VIGRKLPT +E  T LYRM+IFAPD VVA SRFWYFLRQLRKFKKTTGEIVSV+ I E++PL++KNFGIWLRYDSRSGTHNMYREYRDL VS A+TQCYRDMGARHRARAH+IQII+VEP+ +S  RRP+V+QMHDSKI+FPL SRVQK GGS+FKA+RP+TY+
Sbjct:    1 MRAKGNLKEYCVIGRKLPTEKEQVTSLYRMRIFAPDDVVATSRFWYFLRQLRKFKKTTGEIVSVKLIKEKRPLRVKNFGIWLRYDSRSGTHNMYREYRDLNVSDAVTQCYRDMGARHRARAHSIQIIKVEPIHSSVCRRPLVKQMHDSKIRFPLPSRVQKSGGSLFKARRPNTYY 175          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|961375446|gb|ALS04467.1| (60S ribosomal protein L18a [Acartia pacifica])

HSP 1 Score: 296.204 bits (757), Expect = 1.430e-100
Identity = 138/176 (78.41%), Postives = 154/176 (87.50%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGGSMFKAKRPDTYFQ 176
            M+A GTLKEY VIGRKLPT  EP TPLY+M+IFA D VVA+SRFWYFLRQLRKFKKTTGEIVS EE+ E+ PLK+KNFGIWLRY+SRSGTHNMYREYRDLT++ AITQCYRDMGARHRARAH+IQIIR E VAA+K RRP+V QMHDSKIKFPL  RVQK  G M +A RP+T+FQ
Sbjct:    1 MKAKGTLKEYTVIGRKLPTETEPVTPLYKMRIFATDPVVARSRFWYFLRQLRKFKKTTGEIVSCEEVREKYPLKVKNFGIWLRYNSRSGTHNMYREYRDLTLNGAITQCYRDMGARHRARAHSIQIIRCEKVAANKCRRPLVTQMHDSKIKFPLPCRVQKTEGQMIQANRPNTFFQ 176          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|125808079|ref|XP_001360626.1| (uncharacterized protein Dpse_GA19650 [Drosophila pseudoobscura pseudoobscura] >gi|195150529|ref|XP_002016203.1| GL10622 [Drosophila persimilis] >gi|1036945370|ref|XP_017146142.1| PREDICTED: 60S ribosomal protein L18a [Drosophila miranda] >gi|1037036137|ref|XP_017125437.1| PREDICTED: 60S ribosomal protein L18a [Drosophila elegans] >gi|1236495726|ref|XP_022225805.1| 60S ribosomal protein L18a [Drosophila obscura] >gi|54635798|gb|EAL25201.1| uncharacterized protein Dpse_GA19650 [Drosophila pseudoobscura pseudoobscura] >gi|194110050|gb|EDW32093.1| GL10622 [Drosophila persimilis])

HSP 1 Score: 285.034 bits (728), Expect = 3.718e-96
Identity = 130/177 (73.45%), Postives = 153/177 (86.44%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGG-SMFKAKRPDTYFQ 176
            MRA G LKEY V+GRKLP+ +EP+TPLY+M+IFAPD +VAKSRFWYFLRQL+KFKKTTGEIVS++++ E  P+KIKNFGIWLRYDSRSGTHNMYREYRDLTV  A+TQCYRDMGARHRARAH+IQII+VE +AA+KTRR  V+Q HDSKIKFPL  RV  +G   +F  ++P TYFQ
Sbjct:    1 MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPIKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVESIAAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYFQ 177          
BLAST of 60s ribosomal protein l18a vs. nr
Match: gi|1036828331|ref|XP_016976516.1| (PREDICTED: 60S ribosomal protein L18a [Drosophila rhopaloa])

HSP 1 Score: 285.034 bits (728), Expect = 4.431e-96
Identity = 130/177 (73.45%), Postives = 153/177 (86.44%), Query Frame = 0
Query:    1 MRASGTLKEYRVIGRKLPTAEEPETPLYRMKIFAPDQVVAKSRFWYFLRQLRKFKKTTGEIVSVEEILEQKPLKIKNFGIWLRYDSRSGTHNMYREYRDLTVSAAITQCYRDMGARHRARAHAIQIIRVEPVAASKTRRPIVQQMHDSKIKFPLTSRVQKRGG-SMFKAKRPDTYFQ 176
            MRA G LKEY V+GRKLP+ +EP+TPLY+M+IFAPD +VAKSRFWYFLRQL+KFKKTTGEIVS++++ E  P+KIKNFGIWLRYDSRSGTHNMYREYRDLTV  A+TQCYRDMGARHRARAH+IQII+VE +AA+KTRR  V+Q HDSKIKFPL  RV  +G   +F  ++P TYFQ
Sbjct:    1 MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVESIAAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYFQ 177          
The following BLAST results are available for this feature:
BLAST of 60s ribosomal protein l18a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000094635.267e-10680.00supercontig:LSalAtl2s:LSalAtl2s60:129351:130208:-1... [more]
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BLAST of 60s ribosomal protein l18a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
gi|857336418|sp|P0CT68.1|RL20A_SCHPO2.691e-5952.57RecName: Full=60S ribosomal protein L20-A; AltName... [more]
gi|75154179|sp|Q8L7K0.1|R18A1_ARATH1.495e-5747.67RecName: Full=60S ribosomal protein L18a-1[more]
gi|21431842|sp|P51418.2|R18A2_ARATH2.699e-5647.65RecName: Full=60S ribosomal protein L18a-2[more]
gi|21362874|sp|Q9ATF5.1|RL18A_CASSA6.826e-5647.06RecName: Full=60S ribosomal protein L18a[more]
gi|21362875|sp|Q9LUD4.1|R18A3_ARATH1.582e-5545.88RecName: Full=60S ribosomal protein L18a-3[more]
gi|21362867|sp|Q943F3.1|RL18A_ORYSJ1.926e-5447.65RecName: Full=60S ribosomal protein L18a[more]
gi|353678069|sp|P0DJ18.1|RL18A_TETTH1.312e-4037.21RecName: Full=60S ribosomal protein L18a[more]

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BLAST of 60s ribosomal protein l18a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325321570|ref|XP_023342598.1|1.591e-10583.5260S ribosomal protein L18a-like [Eurytemora affini... [more]
gi|1325257850|ref|XP_023324577.1|3.140e-10583.5260S ribosomal protein L18a-like [Eurytemora affini... [more]
gi|225717860|gb|ACO14776.1|5.202e-10582.2960S ribosomal protein L18a [Caligus clemensi][more]
gi|961376226|gb|ALS04857.1|6.482e-10481.2560S ribosomal protein L18a [Pseudodiaptomus poples... [more]
gi|961376588|gb|ALS05038.1|2.881e-10381.8260S ribosomal protein L18a [Centropages dorsispina... [more]
gi|1148368809|gb|AQS22647.1|5.442e-10380.6860S ribosomal protein L18a [Pseudodiaptomus poples... [more]
gi|290562738|gb|ADD38764.1|5.213e-10178.8660S ribosomal protein L18a [Lepeophtheirus salmoni... [more]
gi|961375446|gb|ALS04467.1|1.430e-10078.4160S ribosomal protein L18a [Acartia pacifica][more]
gi|125808079|ref|XP_001360626.1|3.718e-9673.45uncharacterized protein Dpse_GA19650 [Drosophila p... [more]
gi|1036828331|ref|XP_016976516.1|4.431e-9673.45PREDICTED: 60S ribosomal protein L18a [Drosophila ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1207_size55689supercontigscaffold1207_size55689:25529..26973 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1207_size55689-snap-gene-0.13-mRNA-1maker-scaffold1207_size55689-snap-gene-0.13-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1207_size55689:25529..26973+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1207_size55689-snap-gene-0.13 ID=maker-scaffold1207_size55689-snap-gene-0.13|Name=60s ribosomal protein l18a|organism=Tigriopus kingsejongensis|type=gene|length=1445bp|location=Sequence derived from alignment at scaffold1207_size55689:25529..26973+ (Tigriopus kingsejongensis)
TGAGCGAGTCAGCTGATGCTTTGTGGTGCTTGAGCTGAACTTCTTCCTTT TCCGCCTTGCGTTTCACGGAGTGACATCCATTCCTTGTGAGACTTTGTGA ACTCGGCCAATATGCGTGCCTCCGGGACTTTGAAGGAATACCGGGTCATC GGTCGGAAGCTGCCGACGGCCGAAGAGCCCGAGACACCGCTTTACCGCAT GAAGATCTTCGCCCCCGACCAGGTTGTGGCAAAGTCCAGGTTCTGGTATT TCTTACGCCAACTCCGCAAGTTCAAGAAGACCACCGGCGAGATCGTCTCC GTCGAGGAGATCCTGGAACAGAAGCCCCTGAAGATCAAGAACTTCGGCAT CTGGCTCAGGTGAGACACTGGATGACCCCTGGGGACTAGTTGAACTTGTG GCCTCATCTTCAGTTGATGTGAGATTCCCTTGCGTTCGCCATAAGGTCGT GGGTAGTTATGACAACTGACCCCCTACTACCCGACCTTTGGTGGGCGGGG GTGATTGATTTGGAATCCACGATGACCTAGTGTAGTTGTACTGTAGTAGC GATTCCTACTTTTGTGTATATACGTTCAATACCAACTCATTTGTCAATGT TGGAGGGTAAATTTTTAGCCCATCCATGTGGGGCGAGTCTAATTTGCCCC CCCACCCAAGACTTGTCAATTCCAAGTTTGACGCTCTGTGCAGACTTTTT GGGCCGATGTCTTGGTAAATGAATGCGTGTTCACCCGCACTTGCGAACCT TCGGCTCAGCCGAGGGTTCAAGCGGGTGCTCACTACATATGTGGCTAGTG AATGCGCCTCTCTCTACCGAAGTTGGGCTCAGAATACCCATTGTCGATGC TTTTATCTTGTAGATACGACTCGCGCTCTGGTACCCACAACATGTACCGT GAATACCGCGACTTGACCGTGAGTGCGGCCATCACCCAGTGCTACCGCGA CATGGGAGCCCGACACAGAGCCCGAGCTCACGCTATCCAGGTAAATTGAC ATTGGCACCGTTAGCTCCAGCGTCGCCATCACTCGAACCCCCACGTTTCA GATCATTCGCGTGGAGCCTGTGGCCGCCAGCAAGACCAGGCGTCCCATTG TGCAGCAAATGCACGACTCCAAGATCAAGTTCCCCCTGACCTCGCGCGTG CAGAAGCGTGGCGGTTCTATGTTCAAGGCCAAGAGACCCGACACCTACTT CCAATAAGTGGGGATGACTTACTAAGATATGACCATCTATCCGTCAGCCG TCAAGCGCGACGTTCAGTGGCATATTGGTTAAATAAACGGCGCCTCCAGT CTCGACATCGAAATTCTATAGCTCAAAGATTCTCTCGATCGTTCGTTACG TGGCCCGGATCATGTTTTTGATCCAATCCAACTTTGTCCAAAGACTAGAA CTATATTAATTAATCACACATCTACCCGGGAGGAGGCTAGCCACG
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Synonyms
The feature '60s ribosomal protein l18a' has the following synonyms
Synonym
Tk07830
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