nuclear receptor nhr-48, maker-scaffold120_size336265-snap-gene-1.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 60.8474 bits (146), Expect = 6.283e-11 Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALK---NKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKK 352 ++C VC + A GY+F A TCE CK+FF R K N +C + C + R C+ CRL+KC +GM K Sbjct: 36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSK 108
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 61.6178 bits (148), Expect = 2.554e-10 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0 Query: 281 LVKLCAVCGDKALGYN-FNALTCESCKAFFRRNALKNKD--FKCPFSN-----KCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQ 363 + +C +CGD A +N + A+ C SC+AFF R K F+C N +C +T TR CQ CR + C GM ++ + EE+ Q Sbjct: 133 MTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 60.4622 bits (145), Expect = 4.525e-10 Identity = 27/95 (28.42%), Postives = 49/95 (51.58%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNK--CEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 C VC D + G ++ C+ C FF+R+ +N+ + C ++ C V R C+ CRLK+C D+GM K+ + + + ++ + + K H Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRRQMSLYFKEH 128
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|2500907|sp|Q24143.1|HR96_DROME (RecName: Full=Nuclear hormone receptor HR96; Short=dHR96; AltName: Full=Nuclear receptor subfamily 1 group J member 1) HSP 1 Score: 162.155 bits (409), Expect = 1.339e-41 Identity = 71/94 (75.53%), Postives = 80/94 (85.11%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR 376 K CAVCGDKALGYNFNA+TCESCKAFFRRNAL K F CPF+ C++TVVTRRFCQKCRL+KC DIGMK E I+S+E+K KR KIE NRAK+R Sbjct: 5 KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRR 98
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 153.68 bits (387), Expect = 1.718e-38 Identity = 64/119 (53.78%), Postives = 88/119 (73.95%), Query Frame = 0 Query: 261 TVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDG 379 T +SGG + S ++ K+C VCGDKA YNFN +TCESCKAFFRRNA K K+ +CPF+ +CE+ +V+RRFCQ+CRL KCF +GMKKEWI+S+E + +K+ ++EENR ++ D Sbjct: 81 TTSSSGG-----NEKESKRTANKVCRVCGDKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQRVEENRERRLQDA 194
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|939319623|sp|G5EFF5.1|DAF12_CAEEL (RecName: Full=Nuclear hormone receptor family member daf-12; AltName: Full=Abnormal dauer formation protein 12) HSP 1 Score: 145.206 bits (365), Expect = 1.078e-35 Identity = 90/226 (39.82%), Postives = 126/226 (55.75%), Query Frame = 0 Query: 251 MDPLHVDQEETVETSG--GKADNDSNDASDKSL--VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEE-KQQKRMKIEENRAKKRHDGPGSHEN--------SLESPGPDLSTGSQPPPLVFTIN-NDSSSLERPQA---RVLPSSRTPTLEDGEPLAKSPRLLDPEASSSQSSPPQFTL 459 M+ H + E+SG G D+ D+S++S K C VCGD A GYNFN +TCESCKAFFRRNAL+ K+FKCP+S CE+ V+RRFCQKCRL+KCF +GMKKEWIL++E+ +++K ++ + PG+ ++ L P ++ P TIN D+ + QA +P +P P A+ L P SS+ SPP +L Sbjct: 80 MNGYHGSGVKLEESSGACGSPDDGLLDSSEESRRRQKTCRVCGDHATGYNFNVITCESCKAFFRRNALRPKEFKCPYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISP------PGAQPYPLTSPVGSSASDSPPNRSL 299
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|190411624|sp|Q1L673.2|VDRB_DANRE (RecName: Full=Vitamin D3 receptor B; Short=VDR-B; AltName: Full=1,25-dihydroxyvitamin D3 receptor B; AltName: Full=Nuclear receptor subfamily 1 group I member 1-B) HSP 1 Score: 126.716 bits (317), Expect = 1.318e-30 Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 0 Query: 275 DASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 D D+++ ++C VCGDKA G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+K+ I+ + ++ H Sbjct: 13 DEFDRNVPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIGMMKEFILTDEEVQRKKELIQRRKDEEAH 115
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|3915241|sp|O13124.1|VDR_XENLA (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 126.331 bits (316), Expect = 2.248e-30 Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 0 Query: 272 DSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 D++ DK++ ++C VCGDKA G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I + ++++ Sbjct: 12 DTDMEFDKNVPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNGDCRITKDNRRHCQSCRLKRCVDIGMMKEFILTDEEVQRKRQMINKRKSEE 115
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|229557878|sp|Q9PTN2.2|VDRA_DANRE (RecName: Full=Vitamin D3 receptor A; Short=VDR-A; AltName: Full=1,25-dihydroxyvitamin D3 receptor A; AltName: Full=Nuclear receptor subfamily 1 group I member 1-A) HSP 1 Score: 125.561 bits (314), Expect = 5.090e-30 Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = 0 Query: 238 SQIQAGEFKRRFKMDPLHVDQEETVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKR---MKIEENRAKKRHDGP 380 S+ +AG + R D V V TS D D++ ++C VCGDKA G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+K+ MK +E A + P Sbjct: 14 SKCEAGACESRVNGDATSVMDLMAVSTSA-----TGQDEFDRNAPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGNCTITKDNRRHCQACRLKRCIDIGMMKEFILTDEEVQRKKDLIMKRKEEEAAREARKP 154
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|137618|sp|P13053.1|VDR_RAT (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 122.865 bits (307), Expect = 3.291e-29 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKR---MKIEENRAKK 375 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR MK +E A K Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALK 117
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|342187016|sp|P48281.2|VDR_MOUSE (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 122.865 bits (307), Expect = 3.439e-29 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKR---MKIEENRAKK 375 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR MK +E A K Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALK 117
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|1352835|sp|P49701.1|VDR_COTJA (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 122.094 bits (305), Expect = 7.165e-29 Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPFS C++T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 37 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFSGDCKITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMI 127
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|161784270|sp|Q28037.2|VDR_BOVIN (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 121.709 bits (304), Expect = 7.338e-29 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCIDIGMMKEFILTDEEVQRKREMI 107
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|910325266|ref|XP_013165741.1| (PREDICTED: thyroid hormone receptor alpha [Papilio xuthus]) HSP 1 Score: 172.555 bits (436), Expect = 1.773e-43 Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0 Query: 256 VDQEETVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 VD +TVE S + S +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL K+FKCPF+N CE+ VVTRRFCQKCRL+KC +GM KE+I+SDE+K +KR KIEENRAKKR Sbjct: 5 VDSGKTVEDSTAQKKE-----STINLQKICLVCGDKALGYNFNAISCESCKAFFRRNALATKEFKCPFANNCEINVVTRRFCQKCRLEKCLAVGMVKEFIMSDEDKAEKRRKIEENRAKKRQ 121
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|512934324|ref|XP_004933007.1| (nuclear hormone receptor HR96 [Bombyx mori]) HSP 1 Score: 172.555 bits (436), Expect = 1.862e-43 Identity = 103/241 (42.74%), Postives = 139/241 (57.68%), Query Frame = 0 Query: 269 ADNDSNDASDK-----SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH---DGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSSSLERPQARVLPSSRTPTLEDGEPLAKSPRLLDPEASSSQSSPPQFTLIKHELTTSNSPPQNPTLAPLPEALYVQP--NLMAFEVQETQI 499 +N + + S K +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C +TVVTRRFCQKCRL+KCF +GM KE+I+S+E+K +KR KIEENRA+KR D S S++ +L++ P + + + N ++ PSS +SP L+ + SS SPP + AP+P VQP N+ F + E QI Sbjct: 5 GENKTENVSQKKELPLNLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCFAVGMVKEFIMSEEDKAEKRRKIEENRARKRKSDCDEAVSSSKSMKKDDENLTSNYPPESIQYDVLNSTT--------CSPSSTV----------QSP--LNNDMESSIQSPPMY-----------------NYAPIPP---VQPEYNMKVFPIDEKQI 205
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|817186249|ref|XP_012287620.1| (uncharacterized protein LOC105703662 [Orussus abietinus]) HSP 1 Score: 174.481 bits (441), Expect = 3.018e-43 Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR 376 K+C VCGDKALGYNFNA++CESCKAFFRRNALKNKDF+CPF+ CE+TV+TRRFCQKCRL KCF+IGM+KE+I+S+EEK KR KIE NRAKKR Sbjct: 14 KVCGVCGDKALGYNFNAVSCESCKAFFRRNALKNKDFRCPFTENCEITVITRRFCQKCRLDKCFNIGMRKEYIMSEEEKVLKRQKIELNRAKKR 107
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|329754448|gb|AEC03603.1| (nuclear receptor HR96 [Musca domestica] >gi|329754450|gb|AEC03604.1| nuclear receptor HR96 [Musca domestica] >gi|329754452|gb|AEC03605.1| nuclear receptor HR96 [Musca domestica] >gi|329754454|gb|AEC03606.1| nuclear receptor HR96 [Musca domestica] >gi|329754456|gb|AEC03607.1| nuclear receptor HR96 [Musca domestica] >gi|329754458|gb|AEC03608.1| nuclear receptor HR96 [Musca domestica] >gi|329754460|gb|AEC03609.1| nuclear receptor HR96 [Musca domestica] >gi|329754462|gb|AEC03610.1| nuclear receptor HR96 [Musca domestica]) HSP 1 Score: 174.481 bits (441), Expect = 4.504e-43 Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR------HDGPGSHENSLESPG 391 K+CAVCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRLKKC DIGMK E I+S+E+K KR KIE NRAK++ G G E ++E PG Sbjct: 6 KVCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFSQNCEITVVTRRFCQKCRLKKCLDIGMKSENIMSEEDKMIKRRKIETNRAKRKLTERSQAGGDGDEEGNVEGPG 120
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|156556063|emb|CAO79101.1| (hormone receptor-like in 96 [Aedes aegypti] >gi|403182855|gb|EAT41126.2| AAEL007202-PA [Aedes aegypti]) HSP 1 Score: 174.481 bits (441), Expect = 4.513e-43 Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSS 412 VK+C+VCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRL KCF IGMKKE+I+S+E+K KR KIE+NRAKK+ + + G +++ G L I + + Sbjct: 33 VKICSVCGDKALGYNFNAMTCESCKAFFRRNALSTKGFTCPFSESCEITVVTRRFCQKCRLDKCFQIGMKKEYIMSEEDKALKRKKIEQNRAKKQKFNGNVSGDGVNFAGSEMAGGMMDNDLSIKIKREGT 163 The following BLAST results are available for this feature:
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of nuclear receptor nhr-48 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear receptor nhr-48 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold120_size336265:89608..102922- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold120_size336265-snap-gene-1.12 ID=maker-scaffold120_size336265-snap-gene-1.12|Name=nuclear receptor nhr-48|organism=Tigriopus kingsejongensis|type=gene|length=13315bp|location=Sequence derived from alignment at scaffold120_size336265:89608..102922- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear receptor nhr-48' has the following synonyms
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