nuclear receptor nhr-48, maker-scaffold120_size336265-snap-gene-1.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 60.8474 bits (146), Expect = 6.283e-11 Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALK---NKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKK 352 ++C VC + A GY+F A TCE CK+FF R K N +C + C + R C+ CRL+KC +GM K Sbjct: 36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSK 108
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 61.6178 bits (148), Expect = 2.554e-10 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0 Query: 281 LVKLCAVCGDKALGYN-FNALTCESCKAFFRRNALKNKD--FKCPFSN-----KCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQ 363 + +C +CGD A +N + A+ C SC+AFF R K F+C N +C +T TR CQ CR + C GM ++ + EE+ Q Sbjct: 133 MTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 60.4622 bits (145), Expect = 4.525e-10 Identity = 27/95 (28.42%), Postives = 49/95 (51.58%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNK--CEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 C VC D + G ++ C+ C FF+R+ +N+ + C ++ C V R C+ CRLK+C D+GM K+ + + + ++ + + K H Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRRQMSLYFKEH 128
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|3915243|sp|O42392.1|VDR_CHICK (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 122.094 bits (305), Expect = 9.000e-29 Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C++T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 40 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNGDCKITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMI 130
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|190411613|sp|A3RGC1.1|VDR_PIG (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 121.709 bits (304), Expect = 1.002e-28 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMI 107
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49036503|sp|Q95MH5.1|VDR_SAGOE (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 121.324 bits (303), Expect = 1.203e-28 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMI 107
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|137617|sp|P11473.1|VDR_HUMAN (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1) HSP 1 Score: 120.553 bits (301), Expect = 2.181e-28 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 278 DKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKI 368 D+++ ++C VCGD+A G++FNA+TCE CK FFRR+ + F CPF+ C +T RR CQ CRLK+C DIGM KE+IL+DEE Q+KR I Sbjct: 17 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMI 107
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|12643939|sp|Q9XYB7.1|NHR8_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-8) HSP 1 Score: 118.627 bits (296), Expect = 3.777e-27 Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWI 355 ++C VC D+A GYNF LTCESCKAFFRRNA K+K+ KCPFS+ C++T +R+FCQ CRL KCF +GM EW+ Sbjct: 24 RICTVCSDRANGYNFGVLTCESCKAFFRRNASKHKEIKCPFSDSCQITSASRKFCQACRLNKCFAVGMNSEWL 96
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49036100|sp|P62044.1|NR1I3_CALUR (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive androstane receptor; Short=CAR) HSP 1 Score: 112.079 bits (279), Expect = 5.094e-26 Identity = 50/90 (55.56%), Postives = 59/90 (65.56%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAK 374 C VCGD+A GY+F+ALTCE CK FFRR KN CPF+ C+V RR C CRL+KC D GMKKE ILS E Q+R K + RA+ Sbjct: 11 CMVCGDRATGYHFHALTCEGCKGFFRRTVSKNTGLTCPFAGNCKVNKAQRRHCPACRLQKCLDAGMKKEMILSAEALVQRRAKQAQRRAQ 100
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49036101|sp|P62045.1|NR1I3_PHOSI (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive androstane receptor; Short=CAR) HSP 1 Score: 112.079 bits (279), Expect = 5.555e-26 Identity = 50/90 (55.56%), Postives = 59/90 (65.56%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAK 374 C VCGD+A GY+F+ALTCE CK FFRR KN CPF+ C+V RR C CRL+KC D GMKKE ILS E Q+R K + RA+ Sbjct: 11 CMVCGDRATGYHFHALTCEGCKGFFRRTVSKNTGLTCPFAGSCKVNKAQRRHCPACRLQKCLDAGMKKEMILSAEALAQRRAKQAQRRAQ 100
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|6093860|sp|O75469.1|NR1I2_HUMAN (RecName: Full=Nuclear receptor subfamily 1 group I member 2; AltName: Full=Orphan nuclear receptor PAR1; AltName: Full=Orphan nuclear receptor PXR; AltName: Full=Pregnane X receptor; AltName: Full=Steroid and xenobiotic receptor; Short=SXR) HSP 1 Score: 111.309 bits (277), Expect = 3.556e-25 Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPF-SNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGP 380 ++C VCGDKA GY+FN +TCE CK FFRR +N +CPF CE+T TRR CQ CRL+KC + GMKKE I+SDE +++R I+ ++++ P Sbjct: 39 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALIKRKKSERTGTQP 137
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49036424|sp|Q8MIM3.2|NR1I3_MACMU (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive androstane receptor; Short=CAR) HSP 1 Score: 109.383 bits (272), Expect = 5.105e-25 Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 0 Query: 276 ASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 AS + ++ C VCGD+A GY+FNALTCE CK FFRR K+ CPF+ CEV+ + RR C CRL+KC D GM+K+ ILS E +R K + RA++ Sbjct: 2 ASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKIQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQ 101
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|10720242|sp|Q9R1A7.1|NR1I2_RAT (RecName: Full=Nuclear receptor subfamily 1 group I member 2; AltName: Full=Orphan nuclear receptor PXR; AltName: Full=Pregnane X receptor) HSP 1 Score: 109.768 bits (273), Expect = 1.085e-24 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 0 Query: 252 DPLHVDQEETVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPF-SNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 +P++VD+E+ GG +++C VCGDKA GY+FN +TCE CK FFRR +N +CPF CE+T TRR CQ CRL+KC + GMKKE I+SD +Q+R I+ + +K Sbjct: 24 EPINVDEED-----GG--------------LQICRVCGDKANGYHFNVMTCEGCKGFFRRAMKRNVRLRCPFRKGTCEITRKTRRQCQACRLRKCLESGMKKEMIMSDAAVEQRRALIKRKKREK 129
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|910325266|ref|XP_013165741.1| (PREDICTED: thyroid hormone receptor alpha [Papilio xuthus]) HSP 1 Score: 172.555 bits (436), Expect = 1.773e-43 Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0 Query: 256 VDQEETVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 VD +TVE S + S +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL K+FKCPF+N CE+ VVTRRFCQKCRL+KC +GM KE+I+SDE+K +KR KIEENRAKKR Sbjct: 5 VDSGKTVEDSTAQKKE-----STINLQKICLVCGDKALGYNFNAISCESCKAFFRRNALATKEFKCPFANNCEINVVTRRFCQKCRLEKCLAVGMVKEFIMSDEDKAEKRRKIEENRAKKRQ 121
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|512934324|ref|XP_004933007.1| (nuclear hormone receptor HR96 [Bombyx mori]) HSP 1 Score: 172.555 bits (436), Expect = 1.862e-43 Identity = 103/241 (42.74%), Postives = 139/241 (57.68%), Query Frame = 0 Query: 269 ADNDSNDASDK-----SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH---DGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSSSLERPQARVLPSSRTPTLEDGEPLAKSPRLLDPEASSSQSSPPQFTLIKHELTTSNSPPQNPTLAPLPEALYVQP--NLMAFEVQETQI 499 +N + + S K +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C +TVVTRRFCQKCRL+KCF +GM KE+I+S+E+K +KR KIEENRA+KR D S S++ +L++ P + + + N ++ PSS +SP L+ + SS SPP + AP+P VQP N+ F + E QI Sbjct: 5 GENKTENVSQKKELPLNLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCFAVGMVKEFIMSEEDKAEKRRKIEENRARKRKSDCDEAVSSSKSMKKDDENLTSNYPPESIQYDVLNSTT--------CSPSSTV----------QSP--LNNDMESSIQSPPMY-----------------NYAPIPP---VQPEYNMKVFPIDEKQI 205
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|817186249|ref|XP_012287620.1| (uncharacterized protein LOC105703662 [Orussus abietinus]) HSP 1 Score: 174.481 bits (441), Expect = 3.018e-43 Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR 376 K+C VCGDKALGYNFNA++CESCKAFFRRNALKNKDF+CPF+ CE+TV+TRRFCQKCRL KCF+IGM+KE+I+S+EEK KR KIE NRAKKR Sbjct: 14 KVCGVCGDKALGYNFNAVSCESCKAFFRRNALKNKDFRCPFTENCEITVITRRFCQKCRLDKCFNIGMRKEYIMSEEEKVLKRQKIELNRAKKR 107
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|329754448|gb|AEC03603.1| (nuclear receptor HR96 [Musca domestica] >gi|329754450|gb|AEC03604.1| nuclear receptor HR96 [Musca domestica] >gi|329754452|gb|AEC03605.1| nuclear receptor HR96 [Musca domestica] >gi|329754454|gb|AEC03606.1| nuclear receptor HR96 [Musca domestica] >gi|329754456|gb|AEC03607.1| nuclear receptor HR96 [Musca domestica] >gi|329754458|gb|AEC03608.1| nuclear receptor HR96 [Musca domestica] >gi|329754460|gb|AEC03609.1| nuclear receptor HR96 [Musca domestica] >gi|329754462|gb|AEC03610.1| nuclear receptor HR96 [Musca domestica]) HSP 1 Score: 174.481 bits (441), Expect = 4.504e-43 Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR------HDGPGSHENSLESPG 391 K+CAVCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRLKKC DIGMK E I+S+E+K KR KIE NRAK++ G G E ++E PG Sbjct: 6 KVCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFSQNCEITVVTRRFCQKCRLKKCLDIGMKSENIMSEEDKMIKRRKIETNRAKRKLTERSQAGGDGDEEGNVEGPG 120
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|156556063|emb|CAO79101.1| (hormone receptor-like in 96 [Aedes aegypti] >gi|403182855|gb|EAT41126.2| AAEL007202-PA [Aedes aegypti]) HSP 1 Score: 174.481 bits (441), Expect = 4.513e-43 Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSS 412 VK+C+VCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRL KCF IGMKKE+I+S+E+K KR KIE+NRAKK+ + + G +++ G L I + + Sbjct: 33 VKICSVCGDKALGYNFNAMTCESCKAFFRRNALSTKGFTCPFSESCEITVVTRRFCQKCRLDKCFQIGMKKEYIMSEEDKALKRKKIEQNRAKKQKFNGNVSGDGVNFAGSEMAGGMMDNDLSIKIKREGT 163 The following BLAST results are available for this feature:
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of nuclear receptor nhr-48 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear receptor nhr-48 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold120_size336265:89608..102922- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold120_size336265-snap-gene-1.12 ID=maker-scaffold120_size336265-snap-gene-1.12|Name=nuclear receptor nhr-48|organism=Tigriopus kingsejongensis|type=gene|length=13315bp|location=Sequence derived from alignment at scaffold120_size336265:89608..102922- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear receptor nhr-48' has the following synonyms
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