nuclear receptor nhr-48, maker-scaffold120_size336265-snap-gene-1.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 60.8474 bits (146), Expect = 6.283e-11 Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALK---NKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKK 352 ++C VC + A GY+F A TCE CK+FF R K N +C + C + R C+ CRL+KC +GM K Sbjct: 36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSK 108
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 61.6178 bits (148), Expect = 2.554e-10 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0 Query: 281 LVKLCAVCGDKALGYN-FNALTCESCKAFFRRNALKNKD--FKCPFSN-----KCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQ 363 + +C +CGD A +N + A+ C SC+AFF R K F+C N +C +T TR CQ CR + C GM ++ + EE+ Q Sbjct: 133 MTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 60.4622 bits (145), Expect = 4.525e-10 Identity = 27/95 (28.42%), Postives = 49/95 (51.58%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNK--CEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 C VC D + G ++ C+ C FF+R+ +N+ + C ++ C V R C+ CRLK+C D+GM K+ + + + ++ + + K H Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRRQMSLYFKEH 128
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|6093861|sp|O54915.1|NR1I2_MOUSE (RecName: Full=Nuclear receptor subfamily 1 group I member 2; AltName: Full=Orphan nuclear receptor PXR; AltName: Full=Pregnane X receptor) HSP 1 Score: 109.383 bits (272), Expect = 1.720e-24 Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPF-SNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 +++C VCGDKA GY+FN +TCE CK FFRR +N +CPF CE+T TRR CQ CRL+KC + GMKKE I+SD +Q+R I+ + +K Sbjct: 35 LQICRVCGDKANGYHFNVMTCEGCKGFFRRAMKRNVRLRCPFRKGTCEITRKTRRQCQACRLRKCLESGMKKEMIMSDAAVEQRRALIKRKKREK 129
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49066046|sp|Q14994.2|NR1I3_HUMAN (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive activator of retinoid response; Short=Constitutive active response; AltName: Full=Constitutive androstane receptor; Short=CAR; AltName: Full=Orphan nuclear receptor MB67) HSP 1 Score: 107.842 bits (268), Expect = 2.027e-24 Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 276 ASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 AS + ++ C VCGD+A GY+FNALTCE CK FFRR K+ CPF+ CEV+ RR C CRL+KC D GM+K+ ILS E +R K + RA++ Sbjct: 2 ASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQ 101
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|146325014|sp|A2T7D9.1|NR1I3_PANTR (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive androstane receptor; Short=CAR) HSP 1 Score: 107.457 bits (267), Expect = 2.242e-24 Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 276 ASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 AS + ++ C VCGD+A GY+FNALTCE CK FFRR K+ CPF+ CEV+ RR C CRL+KC D GM+K+ ILS E +R K + RA++ Sbjct: 2 ASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQ 101
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 107.457 bits (267), Expect = 3.951e-24 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNK--DFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHD 378 +LC VCGDKA GY++ +TCE CK FFRR KN + C + KC + VTR CQ+CR KKC +GM + +L D ++ KR IEENR K+R D Sbjct: 17 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKD 114
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 107.071 bits (266), Expect = 4.778e-24 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNK--DFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHD 378 +LC VCGDKA GY++ +TCE CK FFRR KN + C + KC + VTR CQ+CR KKC +GM + +L D ++ KR IEENR K+R D Sbjct: 17 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKD 114
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|1247043244|gb|PCG77848.1| (hypothetical protein B5V51_6160, partial [Heliothis virescens]) HSP 1 Score: 171.785 bits (434), Expect = 1.395e-44 Identity = 80/128 (62.50%), Postives = 97/128 (75.78%), Query Frame = 0 Query: 280 SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTGSQPPPLVFTI 407 SL K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C +TVVTRRFCQKCRL+KC IGM KE+I+S+E+K +KR KIEENRA+KR P S ++ D S PL T+ Sbjct: 21 SLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCLSIGMVKEFIMSEEDKAEKRRKIEENRARKRQRDPDDAVTSSKNVKRDDEGDSGLIPLQDTV 148
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|347971484|ref|XP_313130.5| (AGAP004224-PA [Anopheles gambiae str. PEST] >gi|333468689|gb|EAA08573.6| AGAP004224-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 177.948 bits (450), Expect = 3.857e-44 Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 0 Query: 265 SGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENS 386 +G D D+ A++ ++ K+C+VCGDKALGYNFNA+TCESCKAFFRRNAL K F CPF+ C++T+VTRRFCQKCRL+KCF IGMKKE+I+S+E+K KR KIE+NRAKKR + E S Sbjct: 16 NGTMPDGDAAMAANGAISKICSVCGDKALGYNFNAVTCESCKAFFRRNALSTKGFTCPFNENCDITIVTRRFCQKCRLEKCFRIGMKKEYIMSEEDKVLKRKKIEQNRAKKRQSNGSASEGS 137
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|909572319|ref|XP_013141779.1| (PREDICTED: nuclear hormone receptor family member nhr-8 [Papilio polytes]) HSP 1 Score: 172.555 bits (436), Expect = 4.321e-44 Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 0 Query: 280 SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL K+FKCPFSN CE+ VVTRRFCQKCRL+KC IGM KE+I+SDE+K +KR KIEENRAKKR Sbjct: 24 NLQKICLVCGDKALGYNFNAISCESCKAFFRRNALATKEFKCPFSNNCEINVVTRRFCQKCRLEKCLAIGMVKEFIMSDEDKAEKRRKIEENRAKKRQ 121
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|913326435|ref|XP_013194625.1| (PREDICTED: nuclear hormone receptor family member nhr-8-like [Amyelois transitella]) HSP 1 Score: 174.096 bits (440), Expect = 4.930e-44 Identity = 100/240 (41.67%), Postives = 134/240 (55.83%), Query Frame = 0 Query: 280 SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESP-----GPDLSTGSQPPPLVFTINNDSSSLERPQARVLPSSRTPTLEDGEPLAKSPRLLDPEASSSQSSPPQFTLIKHELTTSNSPPQNPTLAPLPEALYVQPNLMAFEVQETQIDPSRTGFPSNEPETP 514 +L K+C VCGD+ALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C++TVVTRRFCQKCRL+KCF IGM KE+I+S+E+K +KR KIEENRA+KR ++++ S D S PP I DS++ PSS + +LD + SS SPP + + + P + P+ E + +L + ET E ETP Sbjct: 24 NLQKICLVCGDRALGYNFNAISCESCKAFFRRNALTSKEFKCPFTNNCDITVVTRRFCQKCRLEKCFSIGMVKEFIMSEEDKAEKRRKIEENRARKRQFCDKESDDNVTSSKNFKRDDDTQVASVPPVPDSVIQYDSTTCS-------PSSTVQS------------MLDADMDSSIHSPPLY----YAPIQNTEIPYTMKVYPIDEKTVISRSLYEHRMMETYRTYDMDSNMYMESETP 240
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|1000211149|gb|KXJ80985.1| (hypothetical protein RP20_CCG022281 [Aedes albopictus]) HSP 1 Score: 177.563 bits (449), Expect = 5.908e-44 Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTG 397 VK+C+VCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRL KCF IGMKKE+I+S+E+K +KR KIEENR K+ ++G GS N PG + G Sbjct: 221 VKICSVCGDKALGYNFNAMTCESCKAFFRRNALSTKGFTCPFSESCEITVVTRRFCQKCRLDKCFQIGMKKEYIMSEEDKARKRKKIEENRNKRVNNGTGS-SNRANFPGGAMGGG 335
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|768414533|ref|XP_011547775.1| (PREDICTED: nuclear hormone receptor HR96-like [Plutella xylostella]) HSP 1 Score: 172.555 bits (436), Expect = 6.899e-44 Identity = 74/98 (75.51%), Postives = 88/98 (89.80%), Query Frame = 0 Query: 280 SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C++TVVTRRFCQKCRL KC IGM KE+I+S+E+K +KR KIEENRAKKRH Sbjct: 25 NLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCDITVVTRRFCQKCRLVKCLSIGMVKEFIMSEEDKAEKRKKIEENRAKKRH 122
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|914563900|gb|KOB69542.1| (Nuclear receptor HR96 variant 1, partial [Operophtera brumata]) HSP 1 Score: 167.162 bits (422), Expect = 8.978e-44 Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 0 Query: 280 SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 +L K C VCGDKALGYNFNA++CESCKAFFRRNAL +K+ KCPF+N C +TVVTRRFCQKCRL+KC +GM KE+I+SDE+K +KR KIEENRA+KR Sbjct: 21 NLQKTCLVCGDKALGYNFNAISCESCKAFFRRNALTSKELKCPFTNNCVITVVTRRFCQKCRLEKCLSVGMVKEFIMSDEDKAEKRRKIEENRARKRQ 118
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|936684344|ref|XP_014220137.1| (uncharacterized protein LOC106648021 [Trichogramma pretiosum]) HSP 1 Score: 176.022 bits (445), Expect = 1.085e-43 Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 0 Query: 267 GKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTGSQP 400 G + S DA+ + K+C VCGDKALGYNFNA++CESCKAFFRRNALKNKDF+CPF+ C++T VTRRFCQKCRL KCF IGM+KE+I+S+E+K KR+KIEENRAKK +NS++ D ++ S P Sbjct: 9 GDDEQRSQDAATREANKICGVCGDKALGYNFNAVSCESCKAFFRRNALKNKDFRCPFTENCKITPVTRRFCQKCRLDKCFLIGMRKEYIMSEEDKVLKRLKIEENRAKKTPSKKHKGDNSIDESTFDDNSTSIP 142
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|1000762259|ref|XP_015604180.1| (PREDICTED: nuclear hormone receptor HR96 [Cephus cinctus]) HSP 1 Score: 175.252 bits (443), Expect = 1.695e-43 Identity = 73/94 (77.66%), Postives = 87/94 (92.55%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR 376 K+C VCGDKALGYNFNA++CESCKAFFRRNALKNKDF+CPF+ C++TVVTRRFCQKCRL KCF+IGM+KE+I+S+E+K KR KIE+NRAKKR Sbjct: 12 KICGVCGDKALGYNFNAVSCESCKAFFRRNALKNKDFRCPFTENCDITVVTRRFCQKCRLDKCFNIGMRKEYIMSEEDKVLKRQKIEQNRAKKR 105
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|1199390240|ref|XP_021190051.1| (nuclear hormone receptor HR96 isoform X1 [Helicoverpa armigera] >gi|1199390242|ref|XP_021190053.1| nuclear hormone receptor HR96 isoform X2 [Helicoverpa armigera]) HSP 1 Score: 172.555 bits (436), Expect = 1.718e-43 Identity = 98/203 (48.28%), Postives = 125/203 (61.58%), Query Frame = 0 Query: 262 VETSGGKADNDSNDASD--KSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPD-------------------LSTGSQPPPLVFT-INND-SSSLERPQARVLPSS-RTPTLEDGEPLAKSP 440 ++ S K D+ S + SL K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C +TVVTRRFCQKCRL+KC IGM KE+I+S+E+K +KR KIEENRA+KR P S ++ D LST P V + ++ND +SL+ PQ PS+ TP E P+ P Sbjct: 1 MDNSSDKKDDTSAQKKEVLSSLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCLSIGMVKEFIMSEEDKAEKRRKIEENRARKRQRDPDDAVTSSKNVKRDDEGDTGVIPLQDTVIQYDTLSTTCSPSSTVQSPLSNDLDASLQSPQYNYTPSAPVTPGTEQPYPMKIYP 203 The following BLAST results are available for this feature:
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of nuclear receptor nhr-48 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear receptor nhr-48 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold120_size336265:89608..102922- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold120_size336265-snap-gene-1.12 ID=maker-scaffold120_size336265-snap-gene-1.12|Name=nuclear receptor nhr-48|organism=Tigriopus kingsejongensis|type=gene|length=13315bp|location=Sequence derived from alignment at scaffold120_size336265:89608..102922- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear receptor nhr-48' has the following synonyms
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