nuclear receptor nhr-48, maker-scaffold120_size336265-snap-gene-1.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 60.8474 bits (146), Expect = 6.283e-11 Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALK---NKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKK 352 ++C VC + A GY+F A TCE CK+FF R K N +C + C + R C+ CRL+KC +GM K Sbjct: 36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSK 108
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 61.6178 bits (148), Expect = 2.554e-10 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0 Query: 281 LVKLCAVCGDKALGYN-FNALTCESCKAFFRRNALKNKD--FKCPFSN-----KCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQ 363 + +C +CGD A +N + A+ C SC+AFF R K F+C N +C +T TR CQ CR + C GM ++ + EE+ Q Sbjct: 133 MTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 60.4622 bits (145), Expect = 4.525e-10 Identity = 27/95 (28.42%), Postives = 49/95 (51.58%), Query Frame = 0 Query: 285 CAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNK--CEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 C VC D + G ++ C+ C FF+R+ +N+ + C ++ C V R C+ CRLK+C D+GM K+ + + + ++ + + K H Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRRQMSLYFKEH 128
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|6093861|sp|O54915.1|NR1I2_MOUSE (RecName: Full=Nuclear receptor subfamily 1 group I member 2; AltName: Full=Orphan nuclear receptor PXR; AltName: Full=Pregnane X receptor) HSP 1 Score: 109.383 bits (272), Expect = 1.720e-24 Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPF-SNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 +++C VCGDKA GY+FN +TCE CK FFRR +N +CPF CE+T TRR CQ CRL+KC + GMKKE I+SD +Q+R I+ + +K Sbjct: 35 LQICRVCGDKANGYHFNVMTCEGCKGFFRRAMKRNVRLRCPFRKGTCEITRKTRRQCQACRLRKCLESGMKKEMIMSDAAVEQRRALIKRKKREK 129
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|49066046|sp|Q14994.2|NR1I3_HUMAN (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive activator of retinoid response; Short=Constitutive active response; AltName: Full=Constitutive androstane receptor; Short=CAR; AltName: Full=Orphan nuclear receptor MB67) HSP 1 Score: 107.842 bits (268), Expect = 2.027e-24 Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 276 ASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 AS + ++ C VCGD+A GY+FNALTCE CK FFRR K+ CPF+ CEV+ RR C CRL+KC D GM+K+ ILS E +R K + RA++ Sbjct: 2 ASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQ 101
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|146325014|sp|A2T7D9.1|NR1I3_PANTR (RecName: Full=Nuclear receptor subfamily 1 group I member 3; AltName: Full=Constitutive androstane receptor; Short=CAR) HSP 1 Score: 107.457 bits (267), Expect = 2.242e-24 Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 276 ASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKK 375 AS + ++ C VCGD+A GY+FNALTCE CK FFRR K+ CPF+ CEV+ RR C CRL+KC D GM+K+ ILS E +R K + RA++ Sbjct: 2 ASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQ 101
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 107.457 bits (267), Expect = 3.951e-24 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNK--DFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHD 378 +LC VCGDKA GY++ +TCE CK FFRR KN + C + KC + VTR CQ+CR KKC +GM + +L D ++ KR IEENR K+R D Sbjct: 17 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKD 114
BLAST of nuclear receptor nhr-48 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 107.071 bits (266), Expect = 4.778e-24 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNK--DFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHD 378 +LC VCGDKA GY++ +TCE CK FFRR KN + C + KC + VTR CQ+CR KKC +GM + +L D ++ KR IEENR K+R D Sbjct: 17 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKD 114
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|910325266|ref|XP_013165741.1| (PREDICTED: thyroid hormone receptor alpha [Papilio xuthus]) HSP 1 Score: 172.555 bits (436), Expect = 1.773e-43 Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0 Query: 256 VDQEETVETSGGKADNDSNDASDKSLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH 377 VD +TVE S + S +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL K+FKCPF+N CE+ VVTRRFCQKCRL+KC +GM KE+I+SDE+K +KR KIEENRAKKR Sbjct: 5 VDSGKTVEDSTAQKKE-----STINLQKICLVCGDKALGYNFNAISCESCKAFFRRNALATKEFKCPFANNCEINVVTRRFCQKCRLEKCLAVGMVKEFIMSDEDKAEKRRKIEENRAKKRQ 121
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|512934324|ref|XP_004933007.1| (nuclear hormone receptor HR96 [Bombyx mori]) HSP 1 Score: 172.555 bits (436), Expect = 1.862e-43 Identity = 103/241 (42.74%), Postives = 139/241 (57.68%), Query Frame = 0 Query: 269 ADNDSNDASDK-----SLVKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRH---DGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSSSLERPQARVLPSSRTPTLEDGEPLAKSPRLLDPEASSSQSSPPQFTLIKHELTTSNSPPQNPTLAPLPEALYVQP--NLMAFEVQETQI 499 +N + + S K +L K+C VCGDKALGYNFNA++CESCKAFFRRNAL +K+FKCPF+N C +TVVTRRFCQKCRL+KCF +GM KE+I+S+E+K +KR KIEENRA+KR D S S++ +L++ P + + + N ++ PSS +SP L+ + SS SPP + AP+P VQP N+ F + E QI Sbjct: 5 GENKTENVSQKKELPLNLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCFAVGMVKEFIMSEEDKAEKRRKIEENRARKRKSDCDEAVSSSKSMKKDDENLTSNYPPESIQYDVLNSTT--------CSPSSTV----------QSP--LNNDMESSIQSPPMY-----------------NYAPIPP---VQPEYNMKVFPIDEKQI 205
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|817186249|ref|XP_012287620.1| (uncharacterized protein LOC105703662 [Orussus abietinus]) HSP 1 Score: 174.481 bits (441), Expect = 3.018e-43 Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR 376 K+C VCGDKALGYNFNA++CESCKAFFRRNALKNKDF+CPF+ CE+TV+TRRFCQKCRL KCF+IGM+KE+I+S+EEK KR KIE NRAKKR Sbjct: 14 KVCGVCGDKALGYNFNAVSCESCKAFFRRNALKNKDFRCPFTENCEITVITRRFCQKCRLDKCFNIGMRKEYIMSEEEKVLKRQKIELNRAKKR 107
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|329754448|gb|AEC03603.1| (nuclear receptor HR96 [Musca domestica] >gi|329754450|gb|AEC03604.1| nuclear receptor HR96 [Musca domestica] >gi|329754452|gb|AEC03605.1| nuclear receptor HR96 [Musca domestica] >gi|329754454|gb|AEC03606.1| nuclear receptor HR96 [Musca domestica] >gi|329754456|gb|AEC03607.1| nuclear receptor HR96 [Musca domestica] >gi|329754458|gb|AEC03608.1| nuclear receptor HR96 [Musca domestica] >gi|329754460|gb|AEC03609.1| nuclear receptor HR96 [Musca domestica] >gi|329754462|gb|AEC03610.1| nuclear receptor HR96 [Musca domestica]) HSP 1 Score: 174.481 bits (441), Expect = 4.504e-43 Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 0 Query: 283 KLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKR------HDGPGSHENSLESPG 391 K+CAVCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRLKKC DIGMK E I+S+E+K KR KIE NRAK++ G G E ++E PG Sbjct: 6 KVCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFSQNCEITVVTRRFCQKCRLKKCLDIGMKSENIMSEEDKMIKRRKIETNRAKRKLTERSQAGGDGDEEGNVEGPG 120
BLAST of nuclear receptor nhr-48 vs. nr
Match: gi|156556063|emb|CAO79101.1| (hormone receptor-like in 96 [Aedes aegypti] >gi|403182855|gb|EAT41126.2| AAEL007202-PA [Aedes aegypti]) HSP 1 Score: 174.481 bits (441), Expect = 4.513e-43 Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 0 Query: 282 VKLCAVCGDKALGYNFNALTCESCKAFFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMKIEENRAKKRHDGPGSHENSLESPGPDLSTGSQPPPLVFTINNDSS 412 VK+C+VCGDKALGYNFNA+TCESCKAFFRRNAL K F CPFS CE+TVVTRRFCQKCRL KCF IGMKKE+I+S+E+K KR KIE+NRAKK+ + + G +++ G L I + + Sbjct: 33 VKICSVCGDKALGYNFNAMTCESCKAFFRRNALSTKGFTCPFSESCEITVVTRRFCQKCRLDKCFQIGMKKEYIMSEEDKALKRKKIEQNRAKKQKFNGNVSGDGVNFAGSEMAGGMMDNDLSIKIKREGT 163 The following BLAST results are available for this feature:
BLAST of nuclear receptor nhr-48 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of nuclear receptor nhr-48 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear receptor nhr-48 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold120_size336265:89608..102922- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold120_size336265-snap-gene-1.12 ID=maker-scaffold120_size336265-snap-gene-1.12|Name=nuclear receptor nhr-48|organism=Tigriopus kingsejongensis|type=gene|length=13315bp|location=Sequence derived from alignment at scaffold120_size336265:89608..102922- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear receptor nhr-48' has the following synonyms
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