run domain-containing protein partial, maker-scaffold1224_size54636-snap-gene-0.14 (gene) Tigriopus kingsejongensis

Overview
Namerun domain-containing protein partial
Unique Namemaker-scaffold1224_size54636-snap-gene-0.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of run domain-containing protein partial vs. L. salmonis genes
Match: EMLSAG00000010997 (supercontig:LSalAtl2s:LSalAtl2s73:471470:486054:-1 gene:EMLSAG00000010997 transcript:EMLSAT00000010997 description:"maker-LSalAtl2s73-augustus-gene-5.9")

HSP 1 Score: 61.6178 bits (148), Expect = 7.359e-13
Identity = 38/107 (35.51%), Postives = 51/107 (47.66%), Query Frame = 0
Query:    1 MAVLQLTALSQFGC---GSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQVS 104
            MA LQ+ A SQFGC    S+ F                                  ++C+TDTD ++  +   PE L  SP VT I R+EL+ AIRDLMQHG+ +V+
Sbjct:  358 MAXLQIAATSQFGCSAMNSQQF---------------------------------QIECITDTDCTSIVSSENPETLIDSPRVTQIVRRELSVAIRDLMQHGMIEVN 431          
BLAST of run domain-containing protein partial vs. SwissProt
Match: gi|123789361|sp|Q0VDN7.1|RUND1_MOUSE (RecName: Full=RUN domain-containing protein 1)

HSP 1 Score: 49.2914 bits (116), Expect = 6.328e-7
Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLD-ACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +AVLQ+  +SQ GC +    +   +R+     Y  L   LE++VD +   A  H       D   + A +Q   L     +T++ RKEL  A+RDL+ HGL
Sbjct:  348 LAVLQIFTVSQLGCATGQIPQTLWQRSQADRDYSHLLKRLEVSVDRVKQLALRH----QPHDHVITSANLQDLSLGGKDELTTVVRKELTVAVRDLLAHGL 444          
BLAST of run domain-containing protein partial vs. SwissProt
Match: gi|296452974|sp|Q96C34.3|RUND1_HUMAN (RecName: Full=RUN domain-containing protein 1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.040e-7
Identity = 35/104 (33.65%), Postives = 48/104 (46.15%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHM----LDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +AVLQ+ A+SQFGC +        +R      Y  L   LE++VD +    L    H   +T        A +Q   L     +T   RKEL  A+RDL+ HGL
Sbjct:  346 LAVLQIFAVSQFGCATGQIPPTLWQRVQADRDYSPLLKRLEVSVDRVKQLALRQQPHDHVITS-------ANLQDLSLGGKDELTMAVRKELTVAVRDLLAHGL 442          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1228011222|ref|XP_021937539.1| (RUN domain-containing protein 1 [Zootermopsis nevadensis])

HSP 1 Score: 98.5969 bits (244), Expect = 7.609e-22
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    3 VLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +LQ+ A++QFGCGS+HF KNTLK+T K NH+GDLRA+LELAV+ +++  S+ +   D+D + S++E  P  L    L TS  RK+LA +IRDLMQHGL
Sbjct:  243 MLQIFAVAQFGCGSDHFKKNTLKKTMKANHWGDLRANLELAVECVIELASNPENTLDSDYT-SDSEDAPVVLCNVKL-TSAVRKQLALSIRDLMQHGL 338          
BLAST of run domain-containing protein partial vs. nr
Match: gi|646698624|gb|KDR09703.1| (RUN domain-containing protein 1, partial [Zootermopsis nevadensis])

HSP 1 Score: 98.2117 bits (243), Expect = 7.951e-22
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    3 VLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +LQ+ A++QFGCGS+HF KNTLK+T K NH+GDLRA+LELAV+ +++  S+ +   D+D + S++E  P  L    L TS  RK+LA +IRDLMQHGL
Sbjct:  220 MLQIFAVAQFGCGSDHFKKNTLKKTMKANHWGDLRANLELAVECVIELASNPENTLDSDYT-SDSEDAPVVLCNVKL-TSAVRKQLALSIRDLMQHGL 315          
BLAST of run domain-containing protein partial vs. nr
Match: gi|961116888|ref|XP_014781080.1| (PREDICTED: RUN domain-containing protein 1-like [Octopus bimaculoides] >gi|918303509|gb|KOF76309.1| hypothetical protein OCBIM_22033481mg [Octopus bimaculoides])

HSP 1 Score: 98.2117 bits (243), Expect = 1.180e-21
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCL----TDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +A+LQ+ A++Q GCG++ F KN LKRT KGNH+GDLRA LE++++ +L   +  + L    +D D S S+ +  P+   +SP VT   R+ELA +IRDLMQHGL
Sbjct:  306 LALLQVFAITQLGCGTQEFQKNLLKRTTKGNHWGDLRAQLEISINKVLKVAAEEEILIPNSSDFD-SESDEDPLPQ---SSPAVTQAVRRELAMSIRDLMQHGL 405          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1242741806|ref|XP_022338537.1| (RUN domain-containing protein 1-like isoform X2 [Crassostrea virginica])

HSP 1 Score: 96.6709 bits (239), Expect = 3.598e-21
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            +A+LQ+  ++QFGCG+  F +N +K+T KGNH+GDLRA LELA++  L+     +     D S  +++ +     +SP +T   RK+LA AIRDLMQHGL ++
Sbjct:  315 LAILQMFIITQFGCGTGEFKRNMMKKTTKGNHWGDLRARLELAINKTLELAQKQEEEPREDQSEYDSDSEEGQEHSSPALTQCVRKDLAMAIRDLMQHGLMEI 417          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1242741808|ref|XP_022338546.1| (RUN domain-containing protein 1-like isoform X3 [Crassostrea virginica])

HSP 1 Score: 96.2857 bits (238), Expect = 3.706e-21
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +A+LQ+  ++QFGCG+  F +N +K+T KGNH+GDLRA LELA++  L+     +     D S  +++ +     +SP +T   RK+LA AIRDLMQHGL
Sbjct:  315 LAILQMFIITQFGCGTGEFKRNMMKKTTKGNHWGDLRARLELAINKTLELAQKQEEEPREDQSEYDSDSEEGQEHSSPALTQCVRKDLAMAIRDLMQHGL 414          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1242741800|ref|XP_022338513.1| (RUN domain-containing protein 1-like isoform X1 [Crassostrea virginica] >gi|1242741802|ref|XP_022338519.1| RUN domain-containing protein 1-like isoform X1 [Crassostrea virginica] >gi|1242741804|ref|XP_022338529.1| RUN domain-containing protein 1-like isoform X1 [Crassostrea virginica])

HSP 1 Score: 96.6709 bits (239), Expect = 4.481e-21
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            +A+LQ+  ++QFGCG+  F +N +K+T KGNH+GDLRA LELA++  L+     +     D S  +++ +     +SP +T   RK+LA AIRDLMQHGL ++
Sbjct:  312 LAILQMFIITQFGCGTGEFKRNMMKKTTKGNHWGDLRARLELAINKTLELAQKQEEEPREDQSEYDSDSEEGQEHSSPALTQCVRKDLAMAIRDLMQHGLMEI 414          
BLAST of run domain-containing protein partial vs. nr
Match: gi|405965543|gb|EKC30909.1| (RUN domain-containing protein 1 [Crassostrea gigas])

HSP 1 Score: 95.9005 bits (237), Expect = 7.124e-21
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            +A+LQ+  ++QFGCG+  F +N +K+T KGNH+GDLRA LELA++  L+     +     D S   ++ +    ++SP +T   RK+LA A+RDLMQHGL ++
Sbjct:  304 LAILQMFIITQFGCGAGEFKRNMMKKTTKGNHWGDLRARLELAINKTLELAQKQEEEPQDDQSEFGSDSEESQEQSSPALTQCVRKDLAMAVRDLMQHGLMEI 406          
BLAST of run domain-containing protein partial vs. nr
Match: gi|762090252|ref|XP_011427499.1| (PREDICTED: RUN domain-containing protein 1 [Crassostrea gigas] >gi|762090254|ref|XP_011427500.1| PREDICTED: RUN domain-containing protein 1 [Crassostrea gigas])

HSP 1 Score: 95.9005 bits (237), Expect = 7.309e-21
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            +A+LQ+  ++QFGCG+  F +N +K+T KGNH+GDLRA LELA++  L+     +     D S   ++ +    ++SP +T   RK+LA A+RDLMQHGL ++
Sbjct:  310 LAILQMFIITQFGCGAGEFKRNMMKKTTKGNHWGDLRARLELAINKTLELAQKQEEEPQDDQSEFGSDSEESQEQSSPALTQCVRKDLAMAVRDLMQHGLMEI 412          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1339046324|ref|XP_023711316.1| (RUN domain-containing protein 1-like [Cryptotermes secundus] >gi|1330906013|gb|PNF29920.1| RUN domain-containing protein 1 [Cryptotermes secundus])

HSP 1 Score: 93.9745 bits (232), Expect = 3.117e-20
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 0
Query:    2 AVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            A+LQ+  ++QFGCG+E F +N LK+T K NH+GDLRA+LELAV+H+++  S+ +   D D + S++E  P  L    L TS  RK LA +IRDLMQHGL
Sbjct:  297 ALLQIFDVAQFGCGNEQFKRNALKKTMKANHWGDLRANLELAVEHVIELASNPENTLDNDYT-SDSEGAPVVLCNVKL-TSAVRKRLAVSIRDLMQHGL 393          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1207924170|ref|XP_021351124.1| (RUN domain-containing protein 1-like isoform X3 [Mizuhopecten yessoensis])

HSP 1 Score: 93.5893 bits (231), Expect = 5.286e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTD-----TDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+  LSQFGCGS  F +N LK+T KGNH+GDLRA LE+AV  + +         D      D   S++E   E   +SP +T + RK+L+ AIRDLMQHGL ++
Sbjct:  315 ITVLQMFLLSQFGCGSRDFQRNVLKKTTKGNHWGDLRARLEVAVAKVAELAKEQQDEKDLRQENQDEYGSDSEESQEQ--SSPALTQVVRKDLSMAIRDLMQHGLMEI 420          
The following BLAST results are available for this feature:
BLAST of run domain-containing protein partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000109977.359e-1335.51supercontig:LSalAtl2s:LSalAtl2s73:471470:486054:-1... [more]
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BLAST of run domain-containing protein partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|123789361|sp|Q0VDN7.1|RUND1_MOUSE6.328e-732.67RecName: Full=RUN domain-containing protein 1[more]
gi|296452974|sp|Q96C34.3|RUND1_HUMAN7.040e-733.65RecName: Full=RUN domain-containing protein 1[more]
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BLAST of run domain-containing protein partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1228011222|ref|XP_021937539.1|7.609e-2254.08RUN domain-containing protein 1 [Zootermopsis neva... [more]
gi|646698624|gb|KDR09703.1|7.951e-2254.08RUN domain-containing protein 1, partial [Zootermo... [more]
gi|961116888|ref|XP_014781080.1|1.180e-2148.08PREDICTED: RUN domain-containing protein 1-like [O... [more]
gi|1242741806|ref|XP_022338537.1|3.598e-2143.69RUN domain-containing protein 1-like isoform X2 [C... [more]
gi|1242741808|ref|XP_022338546.1|3.706e-2145.00RUN domain-containing protein 1-like isoform X3 [C... [more]
gi|1242741800|ref|XP_022338513.1|4.481e-2143.69RUN domain-containing protein 1-like isoform X1 [C... [more]
gi|405965543|gb|EKC30909.1|7.124e-2142.72RUN domain-containing protein 1 [Crassostrea gigas... [more]
gi|762090252|ref|XP_011427499.1|7.309e-2142.72PREDICTED: RUN domain-containing protein 1 [Crasso... [more]
gi|1339046324|ref|XP_023711316.1|3.117e-2051.52RUN domain-containing protein 1-like [Cryptotermes... [more]
gi|1207924170|ref|XP_021351124.1|5.286e-2046.30RUN domain-containing protein 1-like isoform X3 [M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1224_size54636supercontigscaffold1224_size54636:53371..54056 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1224_size54636-snap-gene-0.14-mRNA-1maker-scaffold1224_size54636-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1224_size54636:53371..54056+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1224_size54636-snap-gene-0.14 ID=maker-scaffold1224_size54636-snap-gene-0.14|Name=run domain-containing protein partial|organism=Tigriopus kingsejongensis|type=gene|length=686bp|location=Sequence derived from alignment at scaffold1224_size54636:53371..54056+ (Tigriopus kingsejongensis)
ATGGCTGTCCTCCAATTGACGGCCTTGTCCCAGTTTGGCTGTGGATCAGA GCACTTCTCGAAAAACACCCTCAAGAGAACACCGAAGGGTAATCATTATG GGTGAGTGCAACACATCAGGCTCTCTGATCCCTTCGTTAGTGACTTAGTG AAGGAGATTAATCGTGATCGCCTTCGAGCCGGCAAATCCGGCGAAATTCA CCCTGTCGCAAGGGTCGGCTCAGAGCATAATCCAAGGGTTATCCATACAT TCGATCTTACTAATTTGGACGGGGGAGGGGACTATTGCGTGCAAGTACAC TTAGATCTGTCCAGTTTTCCGTGGTACACGTCGGTAGTTACTATTGAAAG ATTCTGAGGCGGGATGGTTTTCAAGTGTCACCAATGTTGCTCCTGGTAAC ACGAGGCTGAGTCGAGGATTGAGACCACGCTCAGTGAAGTGCAACACATC CTAATCTACCATTCTGCTTTAGGGACCTGCGAGCCCACTTGGAGTTGGCC GTGGACCACATGTTGGACGCATGTAGTCACGTGGATTGCCTCACGGATAC AGATGTGTCGGCCTCCGAGGCTGAGGTCCAGCCCGAGCATCTGAGAGCCT CACCTCTAGTCACGTCGATTGCCAGAAAGGAACTCGCACCTGCCATTCGG GACCTCATGCAACATGGACTGGATCAAGTAAGCGGT
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Synonyms
The feature 'run domain-containing protein partial' has the following synonyms
Synonym
Tk04422
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