run domain-containing protein partial, maker-scaffold1224_size54636-snap-gene-0.14 (gene) Tigriopus kingsejongensis

Overview
Namerun domain-containing protein partial
Unique Namemaker-scaffold1224_size54636-snap-gene-0.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of run domain-containing protein partial vs. L. salmonis genes
Match: EMLSAG00000010997 (supercontig:LSalAtl2s:LSalAtl2s73:471470:486054:-1 gene:EMLSAG00000010997 transcript:EMLSAT00000010997 description:"maker-LSalAtl2s73-augustus-gene-5.9")

HSP 1 Score: 61.6178 bits (148), Expect = 7.359e-13
Identity = 38/107 (35.51%), Postives = 51/107 (47.66%), Query Frame = 0
Query:    1 MAVLQLTALSQFGC---GSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQVS 104
            MA LQ+ A SQFGC    S+ F                                  ++C+TDTD ++  +   PE L  SP VT I R+EL+ AIRDLMQHG+ +V+
Sbjct:  358 MAXLQIAATSQFGCSAMNSQQF---------------------------------QIECITDTDCTSIVSSENPETLIDSPRVTQIVRRELSVAIRDLMQHGMIEVN 431          
BLAST of run domain-containing protein partial vs. SwissProt
Match: gi|123789361|sp|Q0VDN7.1|RUND1_MOUSE (RecName: Full=RUN domain-containing protein 1)

HSP 1 Score: 49.2914 bits (116), Expect = 6.328e-7
Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLD-ACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +AVLQ+  +SQ GC +    +   +R+     Y  L   LE++VD +   A  H       D   + A +Q   L     +T++ RKEL  A+RDL+ HGL
Sbjct:  348 LAVLQIFTVSQLGCATGQIPQTLWQRSQADRDYSHLLKRLEVSVDRVKQLALRH----QPHDHVITSANLQDLSLGGKDELTTVVRKELTVAVRDLLAHGL 444          
BLAST of run domain-containing protein partial vs. SwissProt
Match: gi|296452974|sp|Q96C34.3|RUND1_HUMAN (RecName: Full=RUN domain-containing protein 1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.040e-7
Identity = 35/104 (33.65%), Postives = 48/104 (46.15%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHM----LDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +AVLQ+ A+SQFGC +        +R      Y  L   LE++VD +    L    H   +T        A +Q   L     +T   RKEL  A+RDL+ HGL
Sbjct:  346 LAVLQIFAVSQFGCATGQIPPTLWQRVQADRDYSPLLKRLEVSVDRVKQLALRQQPHDHVITS-------ANLQDLSLGGKDELTMAVRKELTVAVRDLLAHGL 442          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1207924172|ref|XP_021351125.1| (RUN domain-containing protein 1-like isoform X4 [Mizuhopecten yessoensis] >gi|1205904006|gb|OWF51613.1| RUN domain-containing protein 1 [Mizuhopecten yessoensis])

HSP 1 Score: 93.5893 bits (231), Expect = 5.330e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTD-----TDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+  LSQFGCGS  F +N LK+T KGNH+GDLRA LE+AV  + +         D      D   S++E   E   +SP +T + RK+L+ AIRDLMQHGL ++
Sbjct:  313 ITVLQMFLLSQFGCGSRDFQRNVLKKTTKGNHWGDLRARLEVAVAKVAELAKEQQDEKDLRQENQDEYGSDSEESQEQ--SSPALTQVVRKDLSMAIRDLMQHGLMEI 418          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1207924168|ref|XP_021351122.1| (RUN domain-containing protein 1-like isoform X2 [Mizuhopecten yessoensis])

HSP 1 Score: 93.2041 bits (230), Expect = 5.718e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTD-----TDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+  LSQFGCGS  F +N LK+T KGNH+GDLRA LE+AV  + +         D      D   S++E   E   +SP +T + RK+L+ AIRDLMQHGL ++
Sbjct:  316 ITVLQMFLLSQFGCGSRDFQRNVLKKTTKGNHWGDLRARLEVAVAKVAELAKEQQDEKDLRQENQDEYGSDSEESQEQ--SSPALTQVVRKDLSMAIRDLMQHGLMEI 421          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1207924166|ref|XP_021351121.1| (RUN domain-containing protein 1-like isoform X1 [Mizuhopecten yessoensis])

HSP 1 Score: 93.2041 bits (230), Expect = 5.782e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTD-----TDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+  LSQFGCGS  F +N LK+T KGNH+GDLRA LE+AV  + +         D      D   S++E   E   +SP +T + RK+L+ AIRDLMQHGL ++
Sbjct:  318 ITVLQMFLLSQFGCGSRDFQRNVLKKTTKGNHWGDLRARLEVAVAKVAELAKEQQDEKDLRQENQDEYGSDSEESQEQ--SSPALTQVVRKDLSMAIRDLMQHGLMEI 423          
BLAST of run domain-containing protein partial vs. nr
Match: gi|524916104|ref|XP_005112834.1| (PREDICTED: RUN domain-containing protein 1-like [Aplysia californica])

HSP 1 Score: 92.0485 bits (227), Expect = 1.454e-19
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCL----TDTDVSASEAEVQPEHL-RASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+  +S  GCGS  F +N LK+T +GNH+GDLRA LE+AV   +D            TDTD  +S+++   EH+ ++SP +T   RKELA +IRDLM+HGL +V
Sbjct:  331 LTVLQIYVISHLGCGSRDFKRNLLKKTTRGNHWGDLRAKLEMAVTRCIDLAEQQKLEAKQDTDTDEYSSDSD---EHVHQSSPALTQCVRKELAMSIRDLMEHGLMEV 435          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1316141916|ref|XP_023215929.1| (RUN domain-containing protein 1-like [Centruroides sculpturatus])

HSP 1 Score: 88.1965 bits (217), Expect = 3.861e-19
Identity = 44/99 (44.44%), Postives = 70/99 (70.71%), Query Frame = 0
Query:    3 VLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVD-CLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            +LQ+ A++QFGCGS  F +N LK+T KG+H+GDLRA LE+ ++ +++   + +    D+D + S++E  P  ++ +  +T+  RK+LA AIRDLMQHGL
Sbjct:    2 LLQMFAITQFGCGSRAFERNMLKKTTKGSHWGDLRAQLEIIINQVIELVENQEPPFEDSDYT-SDSEDAPV-IQCNEKLTTAVRKDLAAAIRDLMQHGL 98          
BLAST of run domain-containing protein partial vs. nr
Match: gi|908494385|ref|XP_013096537.1| (PREDICTED: RUN domain-containing protein 1-like [Biomphalaria glabrata] >gi|908494388|ref|XP_013096538.1| PREDICTED: RUN domain-containing protein 1-like [Biomphalaria glabrata])

HSP 1 Score: 89.7373 bits (221), Expect = 1.090e-18
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLT--DTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            + +LQ+  +SQ GCGS  F +N LK+T KGNH+GDLRA LE+AV   ++        +  DTD     +    +  ++SP +T   RK+LA A+RDLMQHGL
Sbjct:  328 LTILQIYVISQLGCGSRDFKRNLLKKTAKGNHWGDLRAKLEMAVTRCIELAEEQKSKSKQDTDSEDYSSGSDEQENQSSPELTQCVRKDLAMALRDLMQHGL 429          
BLAST of run domain-containing protein partial vs. nr
Match: gi|957849252|ref|XP_014675154.1| (PREDICTED: RUN domain-containing protein 1-like isoform X1 [Priapulus caudatus] >gi|957849254|ref|XP_014675155.1| PREDICTED: RUN domain-containing protein 1-like isoform X1 [Priapulus caudatus])

HSP 1 Score: 89.7373 bits (221), Expect = 1.233e-18
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 0
Query:    3 VLQLTALSQFGCGS-EHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            +LQ+  ++QFGC S  +F KN LK+T KGNH+GD+RA LELAVD+++   S  +   D+D ++ +    P ++    LV+++ RK+LA AIRDLMQHGL ++
Sbjct:  306 ILQMLLVNQFGCASMNNFRKNELKKTTKGNHWGDMRARLELAVDYVIQLTSAQEQHADSDYTSDDDA--PAYVCNEALVSAV-RKDLAGAIRDLMQHGLMEI 404          
BLAST of run domain-containing protein partial vs. nr
Match: gi|443691591|gb|ELT93405.1| (hypothetical protein CAPTEDRAFT_183187 [Capitella teleta])

HSP 1 Score: 88.1965 bits (217), Expect = 3.386e-18
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLD---ACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGLDQV 103
            + VLQ+ A+SQFGCG   F  N LKRT KGNH+GDLRA LE+A+  + D    C       DTD + S++E  P       LV ++ RKELA A+RDL+QHGL +V
Sbjct:  275 LTVLQIFAISQFGCGGREFQHNLLKRTTKGNHWGDLRARLEIAIAKVTDLALKCPQTPN-EDTDYT-SDSEDTPAIQCNQELVAAV-RKELAMALRDLLQHGLMEV 377          
BLAST of run domain-containing protein partial vs. nr
Match: gi|1009567527|ref|XP_015916151.1| (RUN domain-containing protein 1 [Parasteatoda tepidariorum] >gi|1192750627|ref|XP_021004482.1| RUN domain-containing protein 1 [Parasteatoda tepidariorum])

HSP 1 Score: 87.4261 bits (215), Expect = 7.511e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    1 MAVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDTDVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
            + +LQ+  ++QFGCG  +F KNTLK++ KGNH+GDLRA LE+AV  + ++    +   +     S++E  P  ++ +  +T+  RK+LA AIRDLMQHGL
Sbjct:  293 LTLLQVFTITQFGCGRNNFQKNTLKKSDKGNHWGDLRAKLEVAVSDVENSVLEREPPCEDSDYTSDSEDTP-VVQCNEKLTTAVRKDLASAIRDLMQHGL 391          
BLAST of run domain-containing protein partial vs. nr
Match: gi|954377657|gb|KRY43490.1| (RUN domain-containing protein 1 [Trichinella spiralis])

HSP 1 Score: 86.6557 bits (213), Expect = 1.412e-17
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 0
Query:    2 AVLQLTALSQFGCGSEHFSKNTLKRTPKGNHYGDLRAHLELAVDHMLDACSHVDCLTDT-----DVSASEAEVQPEHLRASPLVTSIARKELAPAIRDLMQHGL 100
             VLQ+  LSQ GC S  F +N LK + KG+H+GDLRA LE++++ M++ C   D  +D       ++ S++EV  E +    ++ ++ R+ L PA+RDL+QHGL
Sbjct:  306 TVLQVYILSQLGCQSRRFRRNALKNSFKGSHWGDLRAALEISINEMVEICEQYDLSSDAGANRRSLTMSQSEVTMEEICPREILRAV-RRNLCPALRDLLQHGL 408          
The following BLAST results are available for this feature:
BLAST of run domain-containing protein partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000109977.359e-1335.51supercontig:LSalAtl2s:LSalAtl2s73:471470:486054:-1... [more]
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BLAST of run domain-containing protein partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|123789361|sp|Q0VDN7.1|RUND1_MOUSE6.328e-732.67RecName: Full=RUN domain-containing protein 1[more]
gi|296452974|sp|Q96C34.3|RUND1_HUMAN7.040e-733.65RecName: Full=RUN domain-containing protein 1[more]
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BLAST of run domain-containing protein partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1207924172|ref|XP_021351125.1|5.330e-2046.30RUN domain-containing protein 1-like isoform X4 [M... [more]
gi|1207924168|ref|XP_021351122.1|5.718e-2046.30RUN domain-containing protein 1-like isoform X2 [M... [more]
gi|1207924166|ref|XP_021351121.1|5.782e-2046.30RUN domain-containing protein 1-like isoform X1 [M... [more]
gi|524916104|ref|XP_005112834.1|1.454e-1946.30PREDICTED: RUN domain-containing protein 1-like [A... [more]
gi|1316141916|ref|XP_023215929.1|3.861e-1944.44RUN domain-containing protein 1-like [Centruroides... [more]
gi|908494385|ref|XP_013096537.1|1.090e-1844.12PREDICTED: RUN domain-containing protein 1-like [B... [more]
gi|957849252|ref|XP_014675154.1|1.233e-1846.08PREDICTED: RUN domain-containing protein 1-like is... [more]
gi|443691591|gb|ELT93405.1|3.386e-1849.06hypothetical protein CAPTEDRAFT_183187 [Capitella ... [more]
gi|1009567527|ref|XP_015916151.1|7.511e-1844.00RUN domain-containing protein 1 [Parasteatoda tepi... [more]
gi|954377657|gb|KRY43490.1|1.412e-1740.38RUN domain-containing protein 1 [Trichinella spira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1224_size54636supercontigscaffold1224_size54636:53371..54056 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1224_size54636-snap-gene-0.14-mRNA-1maker-scaffold1224_size54636-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1224_size54636:53371..54056+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1224_size54636-snap-gene-0.14 ID=maker-scaffold1224_size54636-snap-gene-0.14|Name=run domain-containing protein partial|organism=Tigriopus kingsejongensis|type=gene|length=686bp|location=Sequence derived from alignment at scaffold1224_size54636:53371..54056+ (Tigriopus kingsejongensis)
ATGGCTGTCCTCCAATTGACGGCCTTGTCCCAGTTTGGCTGTGGATCAGA GCACTTCTCGAAAAACACCCTCAAGAGAACACCGAAGGGTAATCATTATG GGTGAGTGCAACACATCAGGCTCTCTGATCCCTTCGTTAGTGACTTAGTG AAGGAGATTAATCGTGATCGCCTTCGAGCCGGCAAATCCGGCGAAATTCA CCCTGTCGCAAGGGTCGGCTCAGAGCATAATCCAAGGGTTATCCATACAT TCGATCTTACTAATTTGGACGGGGGAGGGGACTATTGCGTGCAAGTACAC TTAGATCTGTCCAGTTTTCCGTGGTACACGTCGGTAGTTACTATTGAAAG ATTCTGAGGCGGGATGGTTTTCAAGTGTCACCAATGTTGCTCCTGGTAAC ACGAGGCTGAGTCGAGGATTGAGACCACGCTCAGTGAAGTGCAACACATC CTAATCTACCATTCTGCTTTAGGGACCTGCGAGCCCACTTGGAGTTGGCC GTGGACCACATGTTGGACGCATGTAGTCACGTGGATTGCCTCACGGATAC AGATGTGTCGGCCTCCGAGGCTGAGGTCCAGCCCGAGCATCTGAGAGCCT CACCTCTAGTCACGTCGATTGCCAGAAAGGAACTCGCACCTGCCATTCGG GACCTCATGCAACATGGACTGGATCAAGTAAGCGGT
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Synonyms
The feature 'run domain-containing protein partial' has the following synonyms
Synonym
Tk04422
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