|
|
Associated RNAi Experiments
Homology
BLAST of apoptotic chromatin condensation inducer in the nucleus isoform x5 vs. L. salmonis genes
Match: EMLSAG00000007264 (supercontig:LSalAtl2s:LSalAtl2s408:582699:611533:1 gene:EMLSAG00000007264 transcript:EMLSAT00000007264 description:"maker-LSalAtl2s408-snap-gene-5.40") HSP 1 Score: 59.3066 bits (142), Expect = 7.575e-10 Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 0
Query: 202 GRSTSPIEMIG--SPNSP---SILGTSPLQSPPSN--SLMSGGGIYTQLDGFQPQQQQNQAAQSELAKDFQKFSVPINEFAGFFNNYCNDQTFNGKGNYL-----INNQQQQQPDHHHHQQYQHQQQLNSMAPHTPQTPSSIPDIILTDV---DEDGGGNYHSDLGANFDAESWSQE-LSANMADIIRDDSMLKLLSEGSSMPLDQQIADPLTEEHLK 403
GR TSP++ +G SP+SP S+ TSP+ P S+ +L + Y L+ F Q+Q EL+++FQ+ +N + ++ + +G++ INN+ + + Q Q + + Q S +P+IILTDV D+D G L E +++ L A++ + DDSML+LL+E + DQ IADP+TEEHLK
Sbjct: 360 GRCTSPVDAVGGGSPHSPLGHSMSPTSPVPQPVSHHTNLPNNNASYEDLE-FYSQEQL------ELSREFQR----VNMMDSWDSSTPYSHNYYSRGHHSSRYEPINNEIVNLLTNMDSKGTQQIHQSSGLI----QMSSKLPNIILTDVAGTDQDLHG-----LAMTTALECVNEDSLKADLGKL--DDSMLRLLTEXAGS--DQAIADPVTEEHLK 553
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold122_size333723 | supercontig | scaffold122_size333723:217738..223481 - |
Analyses
This gene is derived from or has results from the following analyses
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold122_size333723:217738..223481- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold122_size333723-snap-gene-2.36 ID=maker-scaffold122_size333723-snap-gene-2.36|Name=apoptotic chromatin condensation inducer in the nucleus isoform x5|organism=Tigriopus kingsejongensis|type=gene|length=5744bp|location=Sequence derived from alignment at scaffold122_size333723:217738..223481- (Tigriopus kingsejongensis)
ATGGGCTCGCTCCCCATGTCGTCCAGTACGAGCGGGTCCAACGTGGTTTT
TGTGCAGAGCTCACGCTCGTCCACCACTTCATGTGTCACAACCTCGGCCA
ACCACGGTGGAAGTGTCCATCTGAGCGACAATGACATCTGCAAGATCCTC
TCCATTCCCATGAACATGCTTACTGAGCCCAGTCAAATGGGTCAGGACGA
CCTGGACTTTGATGACCCGCCCGATGGGCTTCTCAATAACTATCACCTTC
CCTCAAACATGTCTGTGAACAGTCAGCAGTCCCCTCTCAGTGTTGTGACC
ACAACCAAATCGGTGCCTGGAGGCGGGCACGCCCCCAACGGCCACAACGG
CCGACAACCACCCAAGCACAACAACAACCAATATAGCTGTGATAATAATC
AAATTGGAAGTACAACCACAACCACGTCTGCTGGTGCCACAATCAATACC
ACCAAGGAAAGAAATTTCCTACATATGAGCAAGGTTTGTACCGAGTGCAC
GACCACCAACGGGGAGCACCCGAGGTCCCACTCCATGCCCTTTATGTCCA
GTTTCATTTTCATGTCCATTTTATGCATTGGTGTCAGTTGTGTACTTCGA
TCCAAGGACACTCTTGATTCACAACCCTTTCCACCCTCAGGGAATGACAA
CCGACCAAGGTGCACTGCACAACCTGCATCAGGAGCAGTTTGGTGCCTAC
AACAACTCCCAGGTCAATCATCATCAGAGAATTCACAATGGACCAAACGT
AAATGTAGAATGGATTAGGGTGTTTTCCCCTCGGAACTAATCTGGGATAA
ACCTCTCTTTCAGAACGAGTCGCTTTCGACCTATCGCTCCACAAATATAC
ATTCACCTGTTGGCCAAATCCAGGTAAAGTTACCTTTCCCCACAATTTTA
AATCGCAGGTCTCAAAAGAGGGACATGGTCACTATCTTTCGGGCAGTCAA
AGTCAGTTCTCTGTAGTTTCAAAGTAAGCTCTCATTCATTGAAACAAGAA
GCTCAACCTATTTTGGGAGACCATTTCGGGGCAGTTTTGATATGCTTTTG
AAGGTTGGTTTAAAAACAATTCACATATTTTGCCCGAGGCCATTTCCCAG
GCTCCAGAGAGCAACAATCGATCAAGAGGGTGTGTTGGTTCGGGTCTCGG
AAAGTTAGCTCTTTGGGTGGCTAACCAACAGCACCAAGAGAATGGAAGCA
TTGTCCTAGGATTTACATGCTGTACTCAATGCGTTGACATTCGGAAAGTC
AGTGACAGTGATGTGCTTTCCACTTCGCCCTGGCCCTTCAACGTCAATTA
AAATGTCCCATATCAAGTTCAGAGCGTGTTTCCACGGTCTCCACAAGTCA
TATTTATTCTCGTTATGAAACAGGAGAACCAGTTGGCTACAGAGCTGTTC
TCACCCTTTGAAAGTGGGACTCTCTCAAAGGAGACAATTACAGCCCACTA
GCGAGTCTGTTCCGAAATTTGCTATGTACTGTAAGTTGACTATCCCAGCG
CCTCAAACAAAAGCATGGAATGAAAGCCTGGTGCGGCAATATCTTCACAC
TTAGCATGATCTATACAGTAAATTTCGTATTACTGTATGTACATCCTGAT
ACGAAAGCAACCAACACGGATCGTTCAAATAACAAATTCCAGAGTTCAAT
TGCACTTGGGGAACGAAACGTCATGTATTGTTGATTTTGTCCAATAGGGG
GCACTGTAAAGTAACTTGTGGACAGGCTCAAGATAGTGGGTTCACTTGTA
GGATTTAGTTTTGACTGAAAATCGAGAGACTAGCAGTTATAAACCAAAAA
TGTATCAGGCAAGCTGTCAGCGGAGGAAAGTTAAGAAAAATACCATTTCA
TAAACTTCAAAATAGGGCCATTTTGAATGCGAGTAACCCTGATCTGTTAC
GCAAGATGAAATTATTTTTCTCATCTGTAAGTCCTAATATGATTTTGCCT
GGTGGCTCAGTGTGATCTATTGTTTTCACATGTTTTGGTAAACTCTAAAA
ATAATTGGTAAATAATTGGGCACCCAACACCTAAAAAGGCCCGAAAAAAC
TCTTTCACTAAAAAGGTAGATAAAAACACTTAAACCCTATTGGAGGGAGC
CAAACCCCCAAACACACCCCAAATCCATTTTTTGAAAACTATGTCCATGG
TATTTTTTTGTTTTTATTCGTGGTTTGATTTTGAAAAAGGCAGAAATCTA
TGTGAAATTTAATTTCCAGTCTTTGGAAGGAAAATGCGAAGATGTTTTCC
TGGGGTTTCTGGCCTTTTGGAACATTTGACCCCCGTACGTTTTATTCATT
TATAAACTATTACTATAAATCATATTTTGTAAATGGTTTGTGGTTTGTTT
TTCGGTGTATTCTCTCCCAAAGACAAGATGAATCCGCGACAACACTTTTT
TTCCTCCAGTTTCTATCTCTTTTCAACCTACATCTTGTCTAATACAAATG
GAATCCTGTTGCAGGGGAGTCCACACGGCCGAAGTACAAGCCCGATCGAA
ATGATTGGCAGTCCAAACTCTCCGAGTATCTTGGGCACGTCACCACTTCA
GTCTCCACCGTCGAATTCCTTGATGAGCGGTGGAGGCATTTACACACAAC
TGGATGGTTTCCAACCACAACAGCAGCAAAACCAAGCCGCTCAGAGTGAG
CTAGCCAAGGACTTTCAAAAGTTTTCAGTGGTAAGTCTGCCCGGTCGACG
CATCCGCTTCACCCCTCAATAGAGCGTGCTGTGCAGTTTTCAATGTTCAT
ACTTGTACATTGCTTGGTAATGGACCATAGATATATTAGAGAGATCTTGG
TGTCGGACCTGGTGGCAGAACATGGTACAATTTTAAGTGTTCCTCCCCTC
ACACGTACACACTTTATTGGTGAAATATCCATTGGGCAATTGCCCGAATC
CTGTCCACTCTGCATGCTCATTATAGGGGCACTGGTCCCAGGACCATGTG
CCCAGCCTTGCATCCCATCCTGATTTGGTACACGGATTCCTCGCAATTTG
TAGCCTTTTTCCGTTCGCCCATTCATTCAGTTCTTTTGGTTGATTTGGGG
TTTGTTTTGACTTGCACTTTCAGGTGGAATCCACGAATGCAATCTATTGC
CAAGATATGGCTGCTGCCATGTACGCCTCGGGTGGAGTAGAGGGTTCGAG
CCCGTCCAATTATAAAAATGCTCCTCCCACCTCCTCGTCTCAGGTAACCT
GGGCCTCGATCCCCACAGTCGGAGGTGTCAAGAAACGACTAACTTAACCA
CTCCCATGAGCTGATGCTTGAGCCCAGATTTCACGTTTTCTTGTTCCAGC
CCATCAATGAATTTGCCGGATTCTTCAACAACTACTGCAATGATCAGACG
TTCAACGGGAAAGGCAATTACCTCATCAACAACCAACAGCAACAGCAACC
CGACCACCACCATCACCAGCAGTATCAGCACCAACAACAGCTAAATTCCA
TGGCCCCACACACTCCACAAACTCCTTCAAGCATTCCAGACATCATCCTA
ACAGGTATCTAGTCCCTATCTATAAACCACACCAGGGACCTCAGATTATG
GGATTTCACCATAGACCTAGTAGACTCCTCATCTCTGCCCAGAAAGGAAC
TAATCATGTCTGGTGGGGGGGCACCACCAAATTGAAACACCTTGTGGAAG
TGGCATTGTTGCCAAACGAGTTATAAGTGGTAAACAAATTCGGCCAAGAT
GGCACTTTAGCAGGTTAATTATTGAACTGACCTTCAGTTGATTGTGTTCC
CCCTTCTTGGAACTCATTTCTTCAATCTCTGTCCGTCACTGGTTTCAGAT
AGTTTCAATCAGAAATATCCGGGAAAAGATGTTCTCCAGTATATTTGAAA
ATGAGGCCAATAATGATCAAAAGCACAAAATCATTCAAGCATTGTTTTAA
TATTTTATAAATTTTTTTACGGCCGGACCTCGGGTAGAGCCTGGCAGGTG
TACAGTGCTAAACGATTACAGTTAAACGTTGATGTTGATCTTGGAAAATC
CGCAAATGAAGCAATTTCACCGTGACATGGGTCTAGAAGTCGCTCTTGGG
GCCTAAATTGGCAAGAGCTTTTCTATTGAGCTGGATATATAGGTTTCAAG
CTCCTTCATTAGTCAAAACAAACTCTAAGAATTGTAACCATCGGGTGTCC
CTCCCTTCAATCCTGAAAACAACTAACGTTCGGAAGGTTCTGGGATATAA
TTTGGTTATTTCCGTCGAAGGCTCACTTTTCCTGTTGAGATCAATGACAG
ACGCTCGTACTTCTAAATTACCCTCAAAATCATCTCAAAGGGTAATTGGG
AAGCTCATGACGAGAGTTGCAAAATATCAATGCTTGGTTCAACAGCGTGT
CTCGGCACCCAGCTCATCCTGTACCTACCATGGAAGATGTCTATGTTTTT
AACCGTAAATATTACACCCCTTTCTGACTTGGAGTCTCGGAGAACTTTCC
CACTGAGAACGTTTGCTTAAGGGCAAGAGTGTTTGATCTATTTTGGTTAA
ATGTCAGAACAAATCTGTGAGAGTAAATTGTGTTCAAATCGAATTATTTT
TTAGCTGGTGAATTGCCTAATATAATTATGATAGCCGTCCAACGATAAAG
TGAACTCGTATGCTGGCCAAGCTCGTCCAAACATCTGACGATCTTACTAT
TGCATTCCTATTTGCCGACTCACCTTGGCCAATCATACCTACTTGTACAC
AACTGGGCTATTTCTAGCATTACAACATAGTTAATAAGCTTGTGCCTAAG
TCAATAAAACTTACAATACTTCGATTACGCGTGCTGAGCTGGTGCCGTAT
AAAGTGACCCGAAAAGATTCAGACGCACCATTTTTTGTTGATTTTTAGGC
AATTTTGGCAACATTGTTTTGCGGAGTCAACTCATTTCCCATCCCAATGG
GTCTTCATGGGTCCCTAGCCATTGCCGAAAGGGTCACTACGTAGCAGTAA
TGTAAACCCACGTTGTTTTAGCTCCTTGTGATGAGAAAAACACAAAACGT
TGCGAGACTGAAATCAAATTCTTGCGAAAAAATCGTCTTGATGAGAATGC
CTATGGATGTTTCTCACATGATTACATGGATGTACTTGTATTTACAGATG
TAGACGAAGATGGAGGTGGGAACTATCACAGCGACTTGGGCGCCAATTTC
GATGCCGAGTCCTGGTCCCAAGAGCTGAGTGCCAATATGGCGGATATCAT
CCGGGATGATTCCATGTTGAAGCTCCTCTCCGAGGGTTCCAGCATGCCAT
TGGACCAACAGATTGCTGATCCACTCACCGAGGAGCACCTTAAATCCTAA
TGAGTTGGGGCACTATCGACGACAATCCACATCATTTCGGGTGGATCGAA
CACATTCCAGTGGGTCTGAAGCCAATCCCGCCATTGTACTGTGGTCCCAA
TTAGTGGGCCCCACTTCTTCTTCGCCCGCTGAATTTGATCTCACGTTCCA
CACTCATCTTGTATTAAATATCAGCGTTCAACTTCGTAAAACCCATTGGA
TCCGAGTGCAATCCAAGACATATTTTCTCCCCCTCTGACGAAATCAGGCC
TCAAGATTTGAGCTCAAATGTGACATTGTTGTGAATCAATCAATAATCAT
TTCTCTGTTATCAATCCTTATACTTAGTCGAATGTTCCTAGTGTCATTAG
AGTGGTCAATTTAGGTTGGAACCCAGGCGTTGTGAGCACTATTTCCGAAC
CCCGTTTTGTCCCACCCATCACACTCTTTGGACTGTTTTGGGCT back to top
Synonyms
The feature 'apoptotic chromatin condensation inducer in the nucleus isoform x5' has the following synonyms
|
