upf0258 protein kiaa1024-like isoform x2, maker-scaffold1253_size52701-snap-gene-0.9 (gene) Tigriopus kingsejongensis

Overview
Nameupf0258 protein kiaa1024-like isoform x2
Unique Namemaker-scaffold1253_size52701-snap-gene-0.9
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000003971 (supercontig:LSalAtl2s:LSalAtl2s2131:3862:6024:1 gene:EMLSAG00000003971 transcript:EMLSAT00000003971 description:"maker-LSalAtl2s2131-augustus-gene-0.6")

HSP 1 Score: 84.7297 bits (208), Expect = 2.694e-19
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 0
Query:    1 LRIIGAHLNDSEAFDRLKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDFPKEMILNQTNFLQMEDDQNCCLIMNMKGANCDCSKMGDVSTE-IVRNAGKLLAEALAKMDNEGTLPKQAWNC 138
            LR  G  L +  A  RL+KMRP  +NY++WG T+     Y +A   ++LK D  W  V  DF+Y+DF +  +LN   F    D   CC + + +G  C C K    + E +      ++ EA+++ D +   P  +W+C
Sbjct:  107 LRTTGTDLTNPNAALRLQKMRPSSTNYISWGKTSXXVDIYRRASXANILKNDVTWVFVHTDFDYDDFNQTELLNMVRFFTF-DKNTCCGLADEEG--CSCKKWTKGADEYLAHTFFDIIVEAVSQTDKKIVPP--SWDC 240          
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Match: gi|1247039572|gb|PCG74622.1| (hypothetical protein B5V51_13045, partial [Heliothis virescens])

HSP 1 Score: 70.4774 bits (171), Expect = 1.830e-10
Identity = 54/208 (25.96%), Postives = 90/208 (43.27%), Query Frame = 0
Query:   17 LKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDFPKEMILNQTNFLQMEDDQNCCLIMNMKGANCDCSKMGDVSTEIVRNAGKLLAEALAKMDNEGTLPKQAWNCEDPSSGNNATREAF--DLAVGTTVNATSYLFKRDKHNVPLITAQVRIRAKSENKTGIVQVGDWDPVNRFVNAPNYKAENIKDYFRV 222
            LK MRP PS YV  G    +   Y +A    L++RD RW L+  D++  +  +  ++  T  LQ  D   CC +  MK   C C         I+ +  + +AE  +K+D +  L   + +CE+  +  N+TR+      A  T ++  + LF  D     L      I +  +   G   +  W     +   P  + E +K +FR+
Sbjct:  161 LKTMRPEPSFYVIVGENGFIMDTYRRAVKEKLVRRDFRWNLIVTDYSTLELSQ--LVLPTVMLQA-DPGECCRL--MKREECSCPSDFQRKQHILNSLIQYIAEVYSKLDKDLPLITSSVSCEERETTMNSTRDRLYRQFAEDTEISNET-LFYWDMDRSGLFLRSRFILSTYKPGAGQQTIATWSADEEYKLLPGVELEPLKMFFRI 362          
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Match: gi|1168014969|gb|ARB05669.1| (ionization receptor 8a [Helicoverpa armigera])

HSP 1 Score: 70.4774 bits (171), Expect = 1.859e-10
Identity = 53/207 (25.60%), Postives = 87/207 (42.03%), Query Frame = 0
Query:   17 LKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDFPKEMILNQTNFLQMEDDQNCCLIMNMKGANCDCSKMGDVSTEIVRNAGKLLAEALAKMDNEGTLPKQAWNCEDPSSGNNATREAFDLAVGTTVNAT-SYLFKRDKHNVPLITAQVRIRAKSENKTGIVQVGDWDPVNRFVNAPNYKAENIKDYFRV 222
            LK MRP PS YV  G    +   Y +A    L++RD RW LV  D++  +  + ++   T  LQ  D   CC +M  +  +C C         I+    + +AE  +K+D +  L   + +CE+P +  N+TR+            +   LF  D     L      I +  +   G   +  W     +   P  + E +K +FR+
Sbjct:  174 LKTMRPEPSFYVIVGENGFIMDTYRRAVKEKLVRRDYRWNLVLTDYSTLELSQLVLPTVT--LQA-DPGECCKLMRRE--DCSCPNDFQRKQYILNALIQYIAEVYSKLDRDLPLVTSSISCEEPEAVMNSTRDRLYRQFAEDAEISNETLFYWDMDRSGLFLRSRFILSTYKPTAGQQTIATWSADEEYKLLPGVELEPLKMFFRI 375          
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Match: gi|1004401980|gb|EFA00693.2| (Glutamate receptor ionotropic, kainate 3-like Protein [Tribolium castaneum])

HSP 1 Score: 70.4774 bits (171), Expect = 1.929e-10
Identity = 60/223 (26.91%), Postives = 102/223 (45.74%), Query Frame = 0
Query:    1 LRIIGAHLNDSEAFDRLKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDFPKEMILNQ-TNFLQMEDDQNCCLIMNMKGANCDCSKMGDVSTEIVRNAGKLLAEALAKMDNEGTLPKQAWNCEDPSSGNNATREAFDLAVGTTVNATSYLFKRDKHNVPLITAQVRIRAKSENKTGIVQVGDWDPVNRFVNAPNYKAENIKDYFRV 222
            LR++ +   D    +RLK +RP P+N+    +++N+ +  + A   +L+    RW LVF DF Y+ F K+ + N   N L M D++ CC    ++   C+C    ++    +  A   LA+ L  +  E  L +   NC+D S  + ATR  F   +   V++   +FK +          V I    E  TG  +V +++           K E I  +FR+
Sbjct:   91 LRMVISENLDKTTANRLKAIRPIPNNFAIVATSSNMEELLQTALDENLVTLPERWNLVFLDFQYQQFDKKRLKNMPINLLHM-DEEICCRF--LQSEKCECPHDFNLQENFLSLATNTLAKILKTLTMENLL-RADLNCDD-SRYSEATRTRFYELLQQEVDSNDLVFKEN------FGLHVNINGVIE--TGDEKVAEYNYKTGVTVLDGKKVEPITPFFRI 300          
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Match: gi|1008432635|ref|XP_968346.2| (PREDICTED: glutamate receptor ionotropic, kainate 2 [Tribolium castaneum])

HSP 1 Score: 70.4774 bits (171), Expect = 2.152e-10
Identity = 60/223 (26.91%), Postives = 102/223 (45.74%), Query Frame = 0
Query:    1 LRIIGAHLNDSEAFDRLKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDFPKEMILNQ-TNFLQMEDDQNCCLIMNMKGANCDCSKMGDVSTEIVRNAGKLLAEALAKMDNEGTLPKQAWNCEDPSSGNNATREAFDLAVGTTVNATSYLFKRDKHNVPLITAQVRIRAKSENKTGIVQVGDWDPVNRFVNAPNYKAENIKDYFRV 222
            LR++ +   D    +RLK +RP P+N+    +++N+ +  + A   +L+    RW LVF DF Y+ F K+ + N   N L M D++ CC    ++   C+C    ++    +  A   LA+ L  +  E  L +   NC+D S  + ATR  F   +   V++   +FK +          V I    E  TG  +V +++           K E I  +FR+
Sbjct:  152 LRMVISENLDKTTANRLKAIRPIPNNFAIVATSSNMEELLQTALDENLVTLPERWNLVFLDFQYQQFDKKRLKNMPINLLHM-DEEICCRF--LQSEKCECPHDFNLQENFLSLATNTLAKILKTLTMENLL-RADLNCDD-SRYSEATRTRFYELLQQEVDSNDLVFKEN------FGLHVNINGVIE--TGDEKVAEYNYKTGVTVLDGKKVEPITPFFRI 361          
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Match: gi|998510142|ref|XP_015515535.1| (PREDICTED: uncharacterized protein LOC107221151 [Neodiprion lecontei])

HSP 1 Score: 69.707 bits (169), Expect = 4.295e-10
Identity = 63/256 (24.61%), Postives = 118/256 (46.09%), Query Frame = 0
Query:    3 IIGAHLNDSEAFDRLKKMRPRPSNYVAWGSTANVRKAYEKARSMDLLKRDTRWTLVFEDFNYEDF---PKEMILN-QTNFLQMEDDQNCCLIMNMKGANCDC-------------------SKMGDVSTEIVRNAGK-------LLAEALAKMDNEG-TLPKQAWNCEDPS--SGNNATREAF--DLAVGTTVNAT-SYLFKRDKHNVPLITAQVRIRAKSENKTGIVQVGDWDPVNRFVNAPNYKAENIKDYFRV 222
            ++   LN++    +++ MRP P+ YV + ++AN+   ++ A    L++RD  W LVF D+NY+DF     ++ LN   N L M+++  C LI     + C C                   + +G+  T ++    +       LL   ++++   G T+  +  NC++    S +N T EAF  +L    + N T  YL  R+     LIT +  I  K+  +  + +VG+W+  ++       +    + +FR+
Sbjct:  161 VVLDELNEASTM-KVRAMRPSPTYYVIYATSANMETLFKAAIDGGLVRRDGTWNLVFTDYNYQDFRYIAGDLELNVSINILTMKNEVCCRLIGE---SPCTCPNDFQASGKSLTETETYLSASIGNKRTALLSTFPRYFKRLIGLLVSVMSEVQKSGVTVEPKVINCKNKEDVSTDNTTVEAFKKNLLTKLSTNHTFEYLPDRN-----LITYRAEIELKTLTQGRLQKVGEWNKQHKITTDKGMEITPARRFFRI 407          
The following BLAST results are available for this feature:
BLAST of upf0258 protein kiaa1024-like isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000039712.694e-1932.37supercontig:LSalAtl2s:LSalAtl2s2131:3862:6024:1 ge... [more]
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BLAST of upf0258 protein kiaa1024-like isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of upf0258 protein kiaa1024-like isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1247039572|gb|PCG74622.1|1.830e-1025.96hypothetical protein B5V51_13045, partial [Helioth... [more]
gi|1168014969|gb|ARB05669.1|1.859e-1025.60ionization receptor 8a [Helicoverpa armigera][more]
gi|1004401980|gb|EFA00693.2|1.929e-1026.91Glutamate receptor ionotropic, kainate 3-like Prot... [more]
gi|1008432635|ref|XP_968346.2|2.152e-1026.91PREDICTED: glutamate receptor ionotropic, kainate ... [more]
gi|998510142|ref|XP_015515535.1|4.295e-1024.61PREDICTED: uncharacterized protein LOC107221151 [N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1253_size52701supercontigscaffold1253_size52701:39211..39957 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1253_size52701-snap-gene-0.9-mRNA-1maker-scaffold1253_size52701-snap-gene-0.9-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1253_size52701:39211..39957+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1253_size52701-snap-gene-0.9 ID=maker-scaffold1253_size52701-snap-gene-0.9|Name=upf0258 protein kiaa1024-like isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=747bp|location=Sequence derived from alignment at scaffold1253_size52701:39211..39957+ (Tigriopus kingsejongensis)
GCAACTCCTTCCTGAGGATCATTGGGGCGCACTTGAATGACTCTGAGGCC TTTGACCGCTTGAAGAAGATGAGACCCAGACCATCCAACTATGTGGCCTG GGGATCCACGGCTAATGTGAGGAAGGCTTACGAAAAGGCCAGGAGTATGG ACCTTCTCAAGCGCGACACCCGCTGGACTCTAGTCTTTGAGGACTTCAAC TACGAGGACTTCCCCAAGGAGATGATCCTCAACCAGACCAATTTCTTACA AATGGAGGACGACCAGAACTGTTGCCTTATTATGAACATGAAAGGCGCAA GTAGGATTCCGAGCATCTTGGTCTTCTTAACCAGTCTATCTAACCGCATG GTTGTGTCTTTTCCTTTCAGACTGCGATTGCTCCAAGATGGGGGATGTTT CAACCGAGATTGTAAGGAATGCCGGGAAGCTCTTGGCCGAAGCCTTGGCC AAGATGGACAATGAGGGCACCCTACCCAAGCAGGCTTGGAACTGTGAGGA TCCATCGAGTGGGAACAACGCCACGAGGGAGGCCTTCGACCTGGCCGTAG GCACCACGGTCAATGCCACTTCCTATCTTTTCAAGAGGGACAAGCATAAT GTTCCGCTCATCACCGCCCAAGTTCGGATCCGGGCCAAGTCCGAAAACAA AACGGGAATCGTGCAGGTTGGAGACTGGGATCCAGTCAACCGCTTCGTCA ACGCTCCCAACTACAAGGCCGAGAACATCAAGGACTACTTCAGAGTT
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Synonyms
The feature 'upf0258 protein kiaa1024-like isoform x2' has the following synonyms
Synonym
Tk01372
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