triple helix repeat-containing collagen, maker-scaffold130_size324016-snap-gene-2.22 (gene) Tigriopus kingsejongensis

Overview
Nametriple helix repeat-containing collagen
Unique Namemaker-scaffold130_size324016-snap-gene-2.22
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
The following BLAST results are available for this feature:
BLAST of triple helix repeat-containing collagen vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of triple helix repeat-containing collagen vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of triple helix repeat-containing collagen vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold130_size324016supercontigscaffold130_size324016:315510..316819 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:collagen
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold130_size324016-snap-gene-2.22-mRNA-1maker-scaffold130_size324016-snap-gene-2.22-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold130_size324016:315510..316819+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold130_size324016-snap-gene-2.22 ID=maker-scaffold130_size324016-snap-gene-2.22|Name=triple helix repeat-containing collagen|organism=Tigriopus kingsejongensis|type=gene|length=1310bp|location=Sequence derived from alignment at scaffold130_size324016:315510..316819+ (Tigriopus kingsejongensis)
AAGAGGACATGGGACTGGCATGCGTTCCTCATGGCAATCTGGTATGGCAC
ATTTAACCTTATTTATGAGTGTGGTATTCCATTGTTGTATTGGATAGGCT
TGTCCTGCCCTTAACCCATCAACAAGAGTCCAAACCAAAGCTTGAGCAAA
TATCGAAATCCACGGCCAAGAGGTTGCTGCCCCTCCCAAATTTGAGGTTC
CAAGAGCTCCTCCGACAATCAGACCCTTGGTTATCCAAAGATATTGTGAG
CCGAAAGAAGCGTTCAATGCCAGGTAACATAACCGTTCTAGGAAATAGCT
ATAGTGAACATTCTATGCATTATGGCAATGATATCTTTCTAAGAGGATCA
AAATCCCCAAAACCGGATGATCAACTTCAATGAGGCCCAGGGTGGCTCAA
AGGCCGTCAACTACGGGATCGGTTGCGCGAATGGACAGACCCAGGTCAGA
GCCAGGAGGATGAGACACAAGCGAAATGCGCCAGGTTTGAGAGCCAAATC
AACACGATCTTCCCCATGCATGTATGATTGAAGGCTCTCATTTCTTAGAG
TCCTACAACCCTGATTATCCAGCGCCAAATAATCAAGCACAAGAGCAAAA
TGACGCATATGAGCAGTATAAAACCCAGGAAGAGTATTTTCTTGAGGTGC
AAAATCAGCAATCTCCCAATGGTCCAGAATTGCAAGTGGGTCCAAGCTAT
CCCAATGATGCAGCACAGGAGCAAAATGACGCAGATGAGCAGTATAAAAC
CCAGGAAGAGTATTTTCTTGAGGTGCAAAATCAGCAATCTCCCAATGGTC
CAGAATTGCAAGTTGGTCCAAGCTATCCCAATGATCCAGCACAGGAGCAA
AATGACGCAGATGAGCAGTATAAAACCCAGGAAGAGTATTTTCTCGAGGT
GCAAAATCAGCAATCTCCCAATGGTCCAGAATTGCAAGTGGGTCCAAGCT
ATCCCAATGATGCAGCACAGGAGCAAAATGACGCAGATGAGCAGTATAAA
ACCCAGGAAGAGTATTTTCTTGAGGTGCAAAATCAGCAATATTCCAATGG
TCCAGAGCTAGATGCGGGTCCCAACTATGCCAATGGTCCAGAGCAACAGA
CGGACCAGCCATATCCTATTGCTCAACAACCACAGGTGGATGTGCCACGA
GCTCCCATTGGCCTGCAAATTCAACCAGATCCCGAAAGAGGTCCTAGAGA
TCCACAACCGACGCTGGACCAGGAACGTCCCAATTTTCCACAAATGGAAC
AAAATCAAGAATATTCACAACGACAACTGGGCCCACCGCAGTTTGGTCAA
CATGAGCAGC
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Synonyms
The feature 'triple helix repeat-containing collagen' has the following synonyms
Synonym
Tk07107
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