apolipoprotein partial, maker-scaffold1374_size44603-snap-gene-0.7 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of apolipoprotein partial vs. L. salmonis genes
Match: EMLSAG00000003711 (supercontig:LSalAtl2s:LSalAtl2s1:3041020:3041375:-1 gene:EMLSAG00000003711 transcript:EMLSAT00000003711 description:"maker-LSalAtl2s1-augustus-gene-31.4") HSP 1 Score: 75.485 bits (184), Expect = 5.827e-18 Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGF-GDIQSNFTFRFPAKT 133 ECP + + DL KFLGDWYVL Y+YP + L+DLSC+G HF+ F DI S F R PA T Sbjct: 34 ECPSLDSIPDFDLEKFLGDWYVLQYQYPNEKKLKDLSCIGFHFAKNAFSADIXSXFXXRXPATT 97
BLAST of apolipoprotein partial vs. nr
Match: gi|1325279643|ref|XP_023324477.1| (uncharacterized protein LOC111698387 [Eurytemora affinis]) HSP 1 Score: 159.458 bits (402), Expect = 1.651e-45 Identity = 75/150 (50.00%), Postives = 106/150 (70.67%), Query Frame = 0 Query: 72 CPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRFPAKTGFFYHVPTFS-LVSQVKSSLWETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAI 220 CP++QAK N ++ F+G WY+L Y+YP++M L DLSC+ F+ AG DI NF+FR+P + G +YH+PT S +++ + LW T F+GV L+S IVDTDYENWAV VQC + SG++ +F+STR+LSRTR LS + +L V +AI Sbjct: 39 CPISQAKPNFNIDLFMGHWYILEYQYPREMKLTDLSCLSFDFNAAG-EDIVGNFSFRYPPRFGHYYHIPTVSNVIANGQEGLWMTSFKGVSLLSGIVDTDYENWAVFVQCVNESGEN-------KFMSTRVLSRTRDLSPQDWLTVREAI 180
BLAST of apolipoprotein partial vs. nr
Match: gi|1059399930|ref|XP_017772896.1| (PREDICTED: apolipoprotein D [Nicrophorus vespilloides]) HSP 1 Score: 72.7886 bits (177), Expect = 7.987e-12 Identity = 49/176 (27.84%), Postives = 86/176 (48.86%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA-GFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239 +CP ++ N DL +FLG+WYV+ Y Y C+ F+M+ F D+ NFT+ F P ++ T+S+ + + + W E + G+ + +VDTDY +WA+L+ C + S P++LS+ I+SR L + D + Y + + Q++C+ Sbjct: 31 KCPKVKSLRNFDLQQFLGNWYVIQY-YASSEEALAYRCMQAEFTMSVPFIDVTMNFTYSFTDDPLNEQLLGNI-TWSIPNPAQPAHWSHSEDTYEGI-YNTYVVDTDYSSWALLLHCAEKSKS-------PRYLSSFIMSRLPILGVNVISYLRDKLPRYDIDVRYMFDMSQNECD 196
BLAST of apolipoprotein partial vs. nr
Match: gi|1080039148|ref|XP_018580094.1| (apolipoprotein D [Anoplophora glabripennis]) HSP 1 Score: 72.7886 bits (177), Expect = 8.861e-12 Identity = 48/174 (27.59%), Postives = 83/174 (47.70%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDC 238 +CP+ + N DL + LG+WYV+ Y Y C+ F+M+ + NFT+ F P ++ T+++ + V+ + W E + GV + I+D+DY +WA+L+ C + S P++LS+ I+SR L + D + Y + + QDDC Sbjct: 31 KCPVVKPIRNFDLQQMLGEWYVIEY-YASSEEAISYKCMRADFTMSALESVNMNFTYSFTDDPINEQLIGNI-TWTIPNPVEPAHWTHSEDTYEGV-YNTYILDSDYLSWALLLHCAEKSKV-------PRYLSSFIMSREPVLGVNVISYLRDKLPRYDIDLTYMFDMSQDDC 194
BLAST of apolipoprotein partial vs. nr
Match: gi|1133437282|ref|XP_019874904.1| (PREDICTED: LOW QUALITY PROTEIN: apolipoprotein D-like [Aethina tumida] >gi|1133440819|ref|XP_019876816.1| PREDICTED: LOW QUALITY PROTEIN: apolipoprotein D-like [Aethina tumida]) HSP 1 Score: 69.707 bits (169), Expect = 8.705e-11 Identity = 49/178 (27.53%), Postives = 82/178 (46.07%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELD 242 +CP ++ N DL K LGDWYV+ Y Y C+ F+M+ D+ NFT+ F P ++ T+ + + + W E + GV + ++D+DY +WA+L+ C + S P++LS+ I+SR L + D + Y + + Q+DC D Sbjct: 27 KCPKVKSIRNFDLEKMLGDWYVIEY-YASSEEALSYRCMRADFTMSSPQDVTMNFTYSFTDDPINEQLIGNI-TWIIPEPGQPAHWTHSEDTYEGV-YNTYVLDSDYTSWALLLHCAEKSKV-------PRYLSSFIMSREPELGRNVISYLRDKLPRYDIDLSYMFQMNQNDCSTAD 194
BLAST of apolipoprotein partial vs. nr
Match: gi|939645536|ref|XP_008546398.2| (PREDICTED: apolipoprotein D [Microplitis demolitor]) HSP 1 Score: 67.781 bits (164), Expect = 3.669e-10 Identity = 47/181 (25.97%), Postives = 87/181 (48.07%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA--GFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKS-SLW-ETQFRGVELISA-IVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELDA 243 +CP + N D+++FLG WY++ Y Y C+ FS++ ++ NFT+ F P ++ T+ + Q S + W +F E+ + ++D+DY++WA+L+ C P++LS+ I+SR +++ + D +T EY +P+ Q DC+ D Sbjct: 7 KCPQVREIKNFDINQFLGSWYIVQY-YASSEEALSYKCMRAEFSLSKENQNEVTMNFTYNFIDDPLNEMIVGNI-TWKIPLQHDSLAHWVHAEFPYEEVYNTYVLDSDYKSWALLLHC-------AEKNKSPRYLSSFIMSRKKSIGNNVISYLRDKLTRYYINLEYVFPMEQKDCKLYDG 178
BLAST of apolipoprotein partial vs. nr
Match: gi|817213813|ref|XP_012283151.1| (apolipoprotein D [Orussus abietinus]) HSP 1 Score: 67.3958 bits (163), Expect = 9.281e-10 Identity = 48/179 (26.82%), Postives = 86/179 (48.04%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAG-FGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELD 242 +CP + N D+S+FLG WY++ Y Y C+ S++ ++ NFT+ F P ++ T+ + S V + W E + GV + ++D+DY++WA+L+ C + S P++LS+ I+SR +L + + + EY +P+ Q +C LD Sbjct: 37 KCPKVKGIRNFDISEFLGAWYIVQY-YASSEEALAYRCMRAELSVSSEKAEVTMNFTYSFTDDPINEQLVGNI-TWKVPSAVAPAHWIHAEYPYEGV-YNTYVLDSDYKSWALLMHCAEKS-------KSPRYLSSFIMSREPSLGINVISYLREKLPRYDIDLEYMFPMEQKNCTMLD 205
BLAST of apolipoprotein partial vs. nr
Match: gi|242018239|ref|XP_002429586.1| (Apolipoprotein D precursor, putative [Pediculus humanus corporis] >gi|212514553|gb|EEB16848.1| Apolipoprotein D precursor, putative [Pediculus humanus corporis]) HSP 1 Score: 66.6254 bits (161), Expect = 1.454e-9 Identity = 48/185 (25.95%), Postives = 90/185 (48.65%), Query Frame = 0 Query: 66 NPAVPECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFG-DIQSNFTFRF---PAKT----GFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239 N +CP +A N+DL++ +G WY++ Y Y + + SC+ F+++ DI F + F P + + +P F+ + + W E + G+ + ++D+DY+++ +L+ C + KSGS R +LS+ ILSR ++L + + + EY +PV Q +C Sbjct: 25 NEDKTKCPRVKALRNIDLNELMGIWYIVEY-YASSEEMPEYSCMKAKFTLSHENLDISMKFNYSFVDDPDREKLSGNITWQIPDFN-----QPAHWIHAEDTYEGI-YNTYVLDSDYQSFGLLLHCAE---KSGSTR----YLSSLILSRNQSLKINIINYLREKLPRYDIDLEYMFPVAQKNCH 195
BLAST of apolipoprotein partial vs. nr
Match: gi|1059862010|ref|XP_017797673.1| (PREDICTED: apolipoprotein D [Habropoda laboriosa]) HSP 1 Score: 65.855 bits (159), Expect = 3.075e-9 Identity = 47/180 (26.11%), Postives = 84/180 (46.67%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFG-DIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELDA 243 +CP + N D+S+FLG WY++ Y Y C+ S++ ++ NFT+ F P ++ T+ + S + W E + GV + ++D+DY +WA+L+ C + S P++LS+ I+SR L T + + + EY +P+ Q+ C + D Sbjct: 39 KCPKVKGIRNFDISEFLGSWYIVQY-YASSEEALAYRCMRAELSISPESTEVTMNFTYSFTDDPINEQLVGNI-TWKIPSHELPAHWVHAEYPYEGV-YNTYVLDSDYNSWALLMHCAEQSKS-------PRYLSSFIMSREPNLGTNVISYLREKLPRYDIDLEYMFPMDQNQCNKTDT 208
BLAST of apolipoprotein partial vs. nr
Match: gi|1229895594|ref|XP_022168379.1| (uncharacterized protein LOC111032387 [Myzus persicae]) HSP 1 Score: 65.4698 bits (158), Expect = 5.368e-9 Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA-GFGDIQSNFTFRFPAK------TG-FFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDC 238 +CP +A+SN DL G W V+ Y Y + C+ F+++ +I +FT+ + TG +++P+F L W ET + GV + V + WAVL+ C + P++LS+ +LSR RT+ V D + G EY +P+VQDDC Sbjct: 32 KCPEVRARSNCDLDAIKGPWNVIEY-YASSEEVEIYRCMRSTFNLSPDTPEISMDFTYSYADDPDNEMLTGNITWNIPSFELPGH-----WVHMETPYEGV--YNTFVLDCKDTWAVLLHCAEKPSS-------PRYLSSILLSRNRTVPVNVRSYVHDKLPKYGVQLEYNFPMVQDDC 195
BLAST of apolipoprotein partial vs. nr
Match: gi|91079502|ref|XP_969250.1| (PREDICTED: uncharacterized protein LOC657715 isoform X1 [Tribolium castaneum] >gi|270004422|gb|EFA00870.1| hypothetical protein TcasGA2_TC003773 [Tribolium castaneum]) HSP 1 Score: 65.0846 bits (157), Expect = 5.450e-9 Identity = 48/176 (27.27%), Postives = 82/176 (46.59%), Query Frame = 0 Query: 71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGF-GDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239 +CP +A N +L + +G WYV+ Y Y C+ FSM+ F D+ NFT+ F P ++ T+++ + S W E + GV + ++D+DY +WA+L+ C + S P++LS+ I+SR L + D + Y + + Q+DC Sbjct: 26 KCPSVKAIRNFNLEQMMGRWYVIQY-YASSEEALSYRCMRAEFSMSPFLADVTMNFTYSFTDDPLNELLVGNI-TWTVPNPGVPSHWTHSEDTYEGV-YNTFVLDSDYTSWALLLHCAEKSKV-------PRYLSSFIMSREPVLGVNVISYLRDKLPRYDIDLSYMFEMSQNDCN 191 The following BLAST results are available for this feature:
BLAST of apolipoprotein partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of apolipoprotein partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of apolipoprotein partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1374_size44603:22394..23945- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1374_size44603-snap-gene-0.7 ID=maker-scaffold1374_size44603-snap-gene-0.7|Name=apolipoprotein partial|organism=Tigriopus kingsejongensis|type=gene|length=1552bp|location=Sequence derived from alignment at scaffold1374_size44603:22394..23945- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'apolipoprotein partial' has the following synonyms
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