apolipoprotein partial, maker-scaffold1374_size44603-snap-gene-0.7 (gene) Tigriopus kingsejongensis

Overview
Nameapolipoprotein partial
Unique Namemaker-scaffold1374_size44603-snap-gene-0.7
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of apolipoprotein partial vs. L. salmonis genes
Match: EMLSAG00000003711 (supercontig:LSalAtl2s:LSalAtl2s1:3041020:3041375:-1 gene:EMLSAG00000003711 transcript:EMLSAT00000003711 description:"maker-LSalAtl2s1-augustus-gene-31.4")

HSP 1 Score: 75.485 bits (184), Expect = 5.827e-18
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGF-GDIQSNFTFRFPAKT 133
            ECP   +  + DL KFLGDWYVL Y+YP +  L+DLSC+G HF+   F  DI S F  R PA T
Sbjct:   34 ECPSLDSIPDFDLEKFLGDWYVLQYQYPNEKKLKDLSCIGFHFAKNAFSADIXSXFXXRXPATT 97          
BLAST of apolipoprotein partial vs. nr
Match: gi|1325279643|ref|XP_023324477.1| (uncharacterized protein LOC111698387 [Eurytemora affinis])

HSP 1 Score: 159.458 bits (402), Expect = 1.651e-45
Identity = 75/150 (50.00%), Postives = 106/150 (70.67%), Query Frame = 0
Query:   72 CPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRFPAKTGFFYHVPTFS-LVSQVKSSLWETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAI 220
            CP++QAK N ++  F+G WY+L Y+YP++M L DLSC+   F+ AG  DI  NF+FR+P + G +YH+PT S +++  +  LW T F+GV L+S IVDTDYENWAV VQC + SG++       +F+STR+LSRTR LS + +L V +AI
Sbjct:   39 CPISQAKPNFNIDLFMGHWYILEYQYPREMKLTDLSCLSFDFNAAG-EDIVGNFSFRYPPRFGHYYHIPTVSNVIANGQEGLWMTSFKGVSLLSGIVDTDYENWAVFVQCVNESGEN-------KFMSTRVLSRTRDLSPQDWLTVREAI 180          
BLAST of apolipoprotein partial vs. nr
Match: gi|1059399930|ref|XP_017772896.1| (PREDICTED: apolipoprotein D [Nicrophorus vespilloides])

HSP 1 Score: 72.7886 bits (177), Expect = 7.987e-12
Identity = 49/176 (27.84%), Postives = 86/176 (48.86%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA-GFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239
            +CP  ++  N DL +FLG+WYV+ Y Y          C+   F+M+  F D+  NFT+ F   P       ++ T+S+ +  + + W   E  + G+   + +VDTDY +WA+L+ C + S         P++LS+ I+SR   L       + D +        Y + + Q++C+
Sbjct:   31 KCPKVKSLRNFDLQQFLGNWYVIQY-YASSEEALAYRCMQAEFTMSVPFIDVTMNFTYSFTDDPLNEQLLGNI-TWSIPNPAQPAHWSHSEDTYEGI-YNTYVVDTDYSSWALLLHCAEKSKS-------PRYLSSFIMSRLPILGVNVISYLRDKLPRYDIDVRYMFDMSQNECD 196          
BLAST of apolipoprotein partial vs. nr
Match: gi|1080039148|ref|XP_018580094.1| (apolipoprotein D [Anoplophora glabripennis])

HSP 1 Score: 72.7886 bits (177), Expect = 8.861e-12
Identity = 48/174 (27.59%), Postives = 83/174 (47.70%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDC 238
            +CP+ +   N DL + LG+WYV+ Y Y          C+   F+M+    +  NFT+ F   P       ++ T+++ + V+ + W   E  + GV   + I+D+DY +WA+L+ C + S         P++LS+ I+SR   L       + D +        Y + + QDDC
Sbjct:   31 KCPVVKPIRNFDLQQMLGEWYVIEY-YASSEEAISYKCMRADFTMSALESVNMNFTYSFTDDPINEQLIGNI-TWTIPNPVEPAHWTHSEDTYEGV-YNTYILDSDYLSWALLLHCAEKSKV-------PRYLSSFIMSREPVLGVNVISYLRDKLPRYDIDLTYMFDMSQDDC 194          
BLAST of apolipoprotein partial vs. nr
Match: gi|1133437282|ref|XP_019874904.1| (PREDICTED: LOW QUALITY PROTEIN: apolipoprotein D-like [Aethina tumida] >gi|1133440819|ref|XP_019876816.1| PREDICTED: LOW QUALITY PROTEIN: apolipoprotein D-like [Aethina tumida])

HSP 1 Score: 69.707 bits (169), Expect = 8.705e-11
Identity = 49/178 (27.53%), Postives = 82/178 (46.07%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELD 242
            +CP  ++  N DL K LGDWYV+ Y Y          C+   F+M+   D+  NFT+ F   P       ++ T+ +    + + W   E  + GV   + ++D+DY +WA+L+ C + S         P++LS+ I+SR   L       + D +        Y + + Q+DC   D
Sbjct:   27 KCPKVKSIRNFDLEKMLGDWYVIEY-YASSEEALSYRCMRADFTMSSPQDVTMNFTYSFTDDPINEQLIGNI-TWIIPEPGQPAHWTHSEDTYEGV-YNTYVLDSDYTSWALLLHCAEKSKV-------PRYLSSFIMSREPELGRNVISYLRDKLPRYDIDLSYMFQMNQNDCSTAD 194          
BLAST of apolipoprotein partial vs. nr
Match: gi|939645536|ref|XP_008546398.2| (PREDICTED: apolipoprotein D [Microplitis demolitor])

HSP 1 Score: 67.781 bits (164), Expect = 3.669e-10
Identity = 47/181 (25.97%), Postives = 87/181 (48.07%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA--GFGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKS-SLW-ETQFRGVELISA-IVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELDA 243
            +CP  +   N D+++FLG WY++ Y Y          C+   FS++     ++  NFT+ F   P       ++ T+ +  Q  S + W   +F   E+ +  ++D+DY++WA+L+ C             P++LS+ I+SR +++       + D +T      EY +P+ Q DC+  D 
Sbjct:    7 KCPQVREIKNFDINQFLGSWYIVQY-YASSEEALSYKCMRAEFSLSKENQNEVTMNFTYNFIDDPLNEMIVGNI-TWKIPLQHDSLAHWVHAEFPYEEVYNTYVLDSDYKSWALLLHC-------AEKNKSPRYLSSFIMSRKKSIGNNVISYLRDKLTRYYINLEYVFPMEQKDCKLYDG 178          
BLAST of apolipoprotein partial vs. nr
Match: gi|817213813|ref|XP_012283151.1| (apolipoprotein D [Orussus abietinus])

HSP 1 Score: 67.3958 bits (163), Expect = 9.281e-10
Identity = 48/179 (26.82%), Postives = 86/179 (48.04%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAG-FGDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELD 242
            +CP  +   N D+S+FLG WY++ Y Y          C+    S++    ++  NFT+ F   P       ++ T+ + S V  + W   E  + GV   + ++D+DY++WA+L+ C + S         P++LS+ I+SR  +L       + + +       EY +P+ Q +C  LD
Sbjct:   37 KCPKVKGIRNFDISEFLGAWYIVQY-YASSEEALAYRCMRAELSVSSEKAEVTMNFTYSFTDDPINEQLVGNI-TWKVPSAVAPAHWIHAEYPYEGV-YNTYVLDSDYKSWALLMHCAEKS-------KSPRYLSSFIMSREPSLGINVISYLREKLPRYDIDLEYMFPMEQKNCTMLD 205          
BLAST of apolipoprotein partial vs. nr
Match: gi|242018239|ref|XP_002429586.1| (Apolipoprotein D precursor, putative [Pediculus humanus corporis] >gi|212514553|gb|EEB16848.1| Apolipoprotein D precursor, putative [Pediculus humanus corporis])

HSP 1 Score: 66.6254 bits (161), Expect = 1.454e-9
Identity = 48/185 (25.95%), Postives = 90/185 (48.65%), Query Frame = 0
Query:   66 NPAVPECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFG-DIQSNFTFRF---PAKT----GFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239
            N    +CP  +A  N+DL++ +G WY++ Y Y     + + SC+   F+++    DI   F + F   P +        + +P F+     + + W   E  + G+   + ++D+DY+++ +L+ C +   KSGS R    +LS+ ILSR ++L       + + +       EY +PV Q +C 
Sbjct:   25 NEDKTKCPRVKALRNIDLNELMGIWYIVEY-YASSEEMPEYSCMKAKFTLSHENLDISMKFNYSFVDDPDREKLSGNITWQIPDFN-----QPAHWIHAEDTYEGI-YNTYVLDSDYQSFGLLLHCAE---KSGSTR----YLSSLILSRNQSLKINIINYLREKLPRYDIDLEYMFPVAQKNCH 195          
BLAST of apolipoprotein partial vs. nr
Match: gi|1059862010|ref|XP_017797673.1| (PREDICTED: apolipoprotein D [Habropoda laboriosa])

HSP 1 Score: 65.855 bits (159), Expect = 3.075e-9
Identity = 47/180 (26.11%), Postives = 84/180 (46.67%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGFG-DIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCEELDA 243
            +CP  +   N D+S+FLG WY++ Y Y          C+    S++    ++  NFT+ F   P       ++ T+ + S    + W   E  + GV   + ++D+DY +WA+L+ C + S         P++LS+ I+SR   L T     + + +       EY +P+ Q+ C + D 
Sbjct:   39 KCPKVKGIRNFDISEFLGSWYIVQY-YASSEEALAYRCMRAELSISPESTEVTMNFTYSFTDDPINEQLVGNI-TWKIPSHELPAHWVHAEYPYEGV-YNTYVLDSDYNSWALLMHCAEQSKS-------PRYLSSFIMSREPNLGTNVISYLREKLPRYDIDLEYMFPMDQNQCNKTDT 208          
BLAST of apolipoprotein partial vs. nr
Match: gi|1229895594|ref|XP_022168379.1| (uncharacterized protein LOC111032387 [Myzus persicae])

HSP 1 Score: 65.4698 bits (158), Expect = 5.368e-9
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMA-GFGDIQSNFTFRFPAK------TG-FFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDC 238
            +CP  +A+SN DL    G W V+ Y Y     +    C+   F+++    +I  +FT+ +         TG   +++P+F L        W   ET + GV   +  V    + WAVL+ C +           P++LS+ +LSR RT+       V D +   G   EY +P+VQDDC
Sbjct:   32 KCPEVRARSNCDLDAIKGPWNVIEY-YASSEEVEIYRCMRSTFNLSPDTPEISMDFTYSYADDPDNEMLTGNITWNIPSFELPGH-----WVHMETPYEGV--YNTFVLDCKDTWAVLLHCAEKPSS-------PRYLSSILLSRNRTVPVNVRSYVHDKLPKYGVQLEYNFPMVQDDC 195          
BLAST of apolipoprotein partial vs. nr
Match: gi|91079502|ref|XP_969250.1| (PREDICTED: uncharacterized protein LOC657715 isoform X1 [Tribolium castaneum] >gi|270004422|gb|EFA00870.1| hypothetical protein TcasGA2_TC003773 [Tribolium castaneum])

HSP 1 Score: 65.0846 bits (157), Expect = 5.450e-9
Identity = 48/176 (27.27%), Postives = 82/176 (46.59%), Query Frame = 0
Query:   71 ECPLAQAKSNLDLSKFLGDWYVLAYEYPKKMSLRDLSCVGLHFSMAGF-GDIQSNFTFRF---PAKTGFFYHVPTFSLVSQVKSSLW---ETQFRGVELISAIVDTDYENWAVLVQCRDGSGKSGSARGDPQFLSTRILSRTRTLSTEHFLDVVDAITAAGAAAEYRYPVVQDDCE 239
            +CP  +A  N +L + +G WYV+ Y Y          C+   FSM+ F  D+  NFT+ F   P       ++ T+++ +    S W   E  + GV   + ++D+DY +WA+L+ C + S         P++LS+ I+SR   L       + D +        Y + + Q+DC 
Sbjct:   26 KCPSVKAIRNFNLEQMMGRWYVIQY-YASSEEALSYRCMRAEFSMSPFLADVTMNFTYSFTDDPLNELLVGNI-TWTVPNPGVPSHWTHSEDTYEGV-YNTFVLDSDYTSWALLLHCAEKSKV-------PRYLSSFIMSREPVLGVNVISYLRDKLPRYDIDLSYMFEMSQNDCN 191          
The following BLAST results are available for this feature:
BLAST of apolipoprotein partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000037115.827e-1853.13supercontig:LSalAtl2s:LSalAtl2s1:3041020:3041375:-... [more]
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BLAST of apolipoprotein partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of apolipoprotein partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325279643|ref|XP_023324477.1|1.651e-4550.00uncharacterized protein LOC111698387 [Eurytemora a... [more]
gi|1059399930|ref|XP_017772896.1|7.987e-1227.84PREDICTED: apolipoprotein D [Nicrophorus vespilloi... [more]
gi|1080039148|ref|XP_018580094.1|8.861e-1227.59apolipoprotein D [Anoplophora glabripennis][more]
gi|1133437282|ref|XP_019874904.1|8.705e-1127.53PREDICTED: LOW QUALITY PROTEIN: apolipoprotein D-l... [more]
gi|939645536|ref|XP_008546398.2|3.669e-1025.97PREDICTED: apolipoprotein D [Microplitis demolitor... [more]
gi|817213813|ref|XP_012283151.1|9.281e-1026.82apolipoprotein D [Orussus abietinus][more]
gi|242018239|ref|XP_002429586.1|1.454e-925.95Apolipoprotein D precursor, putative [Pediculus hu... [more]
gi|1059862010|ref|XP_017797673.1|3.075e-926.11PREDICTED: apolipoprotein D [Habropoda laboriosa][more]
gi|1229895594|ref|XP_022168379.1|5.368e-929.05uncharacterized protein LOC111032387 [Myzus persic... [more]
gi|91079502|ref|XP_969250.1|5.450e-927.27PREDICTED: uncharacterized protein LOC657715 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1374_size44603supercontigscaffold1374_size44603:22394..23945 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1374_size44603-snap-gene-0.7-mRNA-1maker-scaffold1374_size44603-snap-gene-0.7-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1374_size44603:22394..23945-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1374_size44603-snap-gene-0.7 ID=maker-scaffold1374_size44603-snap-gene-0.7|Name=apolipoprotein partial|organism=Tigriopus kingsejongensis|type=gene|length=1552bp|location=Sequence derived from alignment at scaffold1374_size44603:22394..23945- (Tigriopus kingsejongensis)
ACTTGATCTTCGATCGCCGTTCAATCCGGGACGTGTGACTCCAACAGGAC TTCACCCCTCACACAAATCAAATACCACCTGAGCATAGTGGCAATCATGG CTCCGCTTTCGAACTCGCTTTCATCGGCCGATGTCCGATGTCCTTGGTGG GCGTGGCTGCTCAAGAACATATCCTATCTGGCTGTTTGTGTGTCTCTAGT GCCTTCCTACTCGTCCCCCGCCTCGGTCGCCATGGCCGCACATCGACCCG CTGGATTGTCCTACGGACTGGATAACCCCGCAGTGCCTGAATGTCCCCTC GCCCAAGCCAAGAGTAACCTCGACCTCTCCAAGGTATGGCTCAAGTAAAA AACTCGGGATCGCGAAAATTGGGCAGGCCTTGGGAAGGCATAACTATTAG AGTCGTTGAACGGCCAAACTAAATGTTTCAATGTTCTTCTTCCAGTTTCT TGGCGATTGGTATGTGCTGGCTTACGAGTACCCCAAGAAGATGAGCCTCA GAGACTTGAGCTGCGTGGGCCTTCACTTCTCCATGGCTGGATTTGGCGAT ATTCAGTCGAATTTCACATTCCGCTTTCCTGCCAAGACGGGCTTTTTCTA CCACGTCCCCACATTCTCGCTCGTCAGCCAAGTCAAGTCTTCATTATGGG AAACTCAATTCCGAGGAGGTAAGGATTGCAATTGGTTGGGACCAATCCGG CAAAAACTTCATGGCCACTGCGCAAAGTACAATTCTTCGAGCCACTTGGT CAGGAGCCGACTTTTCCGCTGACAATAACGAGTCTCGGTTTTGGGGCCAA TTAATCACCCACATTCCAACGGATGTGCCCAAATCCACCCAGGACCAAAG TACAAAACGGAATATCCTCCGCACACTCCGCGCCTAGTTCCCTGAACTGA CCTACGACTCGTTCCATTCCAGTTGAGCTCATCTCCGCCATCGTGGACAC AGATTACGAGAATTGGGCTGTTCTGGTCCAATGTCGGGATGGCTCAGGAA AGAGTGGATCTGCTCGAGGCGATCCTCAGTTTCTTTCCACCCGGATCCTT TCTCGGACTCGAACCCTGAGCACGGAGCACTTCTTGGACGTGGTGGACGC CATCACGGCGGCCGGGGCCGCTGCCGAGTACCGATATCCGGTGGTCCAGG ACGATTGCGAGGAGTTGGACGCCTTGTAAACGGATCAACCCATTGGCAAG TGGAGCTCCACCACCGGAATGTGCTTCTTTGTCCAAGACTGTTTCAGTTT GGGGCGAAACCTGTTTTGTTTTTGCTCTCTCTCGAGTCATCGCCAATTAG AAATGGGCAGACACCTTCGAGGGACTATTACCAATGCCACCAACATTGTG TCGTACCTTTAAGTCTATCATGAAATATCCGTGACCATGTGGCCCAGGGG CGCTGGTATTATATACGATTAATTCCTCAGAGCATTTCAGCTCACACCGA ATTGAATTTACAATCAATGCACACTATTTAGTAGTGCGTCGGTATTTTAT ATCATTCATATCGAACGTAAACCGTAGTTTTCCATTGAATAAATGACAAA CC
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Synonyms
The feature 'apolipoprotein partial' has the following synonyms
Synonym
Tk07088
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