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Associated RNAi Experiments
Homology
BLAST of vacuolar protein-sorting-associated protein 36-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011865 (supercontig:LSalAtl2s:LSalAtl2s834:189046:195473:-1 gene:EMLSAG00000011865 transcript:EMLSAT00000011865 description:"snap_masked-LSalAtl2s834-processed-gene-2.2") HSP 1 Score: 61.6178 bits (148), Expect = 1.447e-10 Identity = 47/110 (42.73%), Postives = 55/110 (50.00%), Query Frame = 0
Query: 154 PQHEQTSDQYGSPNAPVHSSPQSSNPDSYGSP-QAPAQ---DSYGSPLAPATSYTPSKATQAGDSYGSPN---------------GAPIKSVVSTGSSGPISSAPSSVPG 244
P H D YGSP A +P +S+ DSYGSP APA DSYGSPLA + AT AGDSYGSP GAP S VST S ++P+ + G
Sbjct: 2 PIHITLGDSYGSPIA----APATSSGDSYGSPVSAPATSSGDSYGSPLA-------APATSAGDSYGSPQSSLITGGSNNLAVAYGAPQTSPVST--SCRTQTSPNQISG 98 HSP 2 Score: 53.9138 bits (128), Expect = 4.779e-8 Identity = 30/70 (42.86%), Postives = 36/70 (51.43%), Query Frame = 0
Query: 157 EQTSDQYGSPNAPVHSSPQSSNPDSYGSPQAPAQDSYGSPLAPATSYTPSKATQAGDSYGSPNGAPIKSV 226
E D YGSP AP + DSYGSPQAP+ D+YG+P A S + D YGSP +SV
Sbjct: 562 EPEQDTYGSPKAPAIGAG-----DSYGSPQAPSVDTYGTPQAAPVS-------NSLDDYGSPKAPACRSV 619 HSP 3 Score: 52.373 bits (124), Expect = 1.394e-7 Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 0
Query: 156 HEQTSD-QYGSPNAPVHSSPQSSNPDSYGSPQAPA---QDSYGSPLAPATSYTPSKATQAGDSYGSPNGAPIKSVVSTGSSGPISSAPSSVPGQVGTQ 249
+EQ + QY + + P+ D+YGSP+APA DSYGSP AP+ D+YG+P AP+ + + S P + A SVP QV Q
Sbjct: 544 YEQVCETQYETEFEQICDEPEQ---DTYGSPKAPAIGAGDSYGSPQAPSV-----------DTYGTPQAAPVSNSLDDYGS-PKAPACRSVPKQVEKQ 626
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold1403_size43014 | supercontig | scaffold1403_size43014:17502..23356 - |
Analyses
This gene is derived from or has results from the following analyses
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1403_size43014:17502..23356- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold1403_size43014-snap-gene-0.11 ID=maker-scaffold1403_size43014-snap-gene-0.11|Name=vacuolar protein-sorting-associated protein 36-like isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=5855bp|location=Sequence derived from alignment at scaffold1403_size43014:17502..23356- (Tigriopus kingsejongensis)
ATGTCCTCGTCCAGGTCGCTCCGGGTCATGAAGTGGGCCAGCGCCGCGGC
CAGCACGTCCTTGGTGGCCTTGCCGGTCCATGTCTTGATCGACAGGGTCC
GGGTCCATACCAGGGGCTCCACGATCTTGACCTGGTCCACCGACATCGTA
GCACCGGACACTCGACACAATCACAAAAAAGTCCGAAATTGTCACCATTG
TCACAAATTGTGATGGGCGCCAAGCGCACGTCTGGCCCCCTTGAGCTTGG
TCCAGCCTAGGAGTCATCACGTTGGTCTGTTGATATATTGGCCCTATCAA
GGTCAACGAAACGAAAGTAACAAAAAAATGTCCCGTACAACAAGGAGCAT
TATGCGTGTCTATATGTTGATCAAGGAATCACTTAACAACCATTCTTCAG
TGGTAATTCTTCTTCGACATGGAAACTTCTACGCAAAGTCTAAATTCGTG
TGATGTGGGTCAGCAAAAACTATCAAGGTTTCGTGTGGCAGAACCCCTCA
TTTTGCGAAGCAAGCTTGCCTTAATCGTAGTACCTAACCAAAGCAGGTTT
TTGTTAAAAGCTGTAACAAAAGACCTGTAAATTGGCCATGGCGGCTAAAG
ATATTGACAAAGATACCTGAAGTCATCCAATTTAATCTGGAATCGTAATT
TGGATTGAAATATCTTGTCGTCGAAAAACATCCGCCACTCGACTTGATCT
AGTTGAGCGTCTGTGCTTAAATAAGCTTGATTTAAGTCAGTCATCAATCC
TGTTTTCCTGCTCATATATAAGCTGAAAGCCACATCCGCTCTCTCTTTTT
GCAAGCATAAAATAAGTCTCGCCAAAGATCCCACATCCGACATCTAAAAC
AATAAGATTGTGAAATGCAGCTAACCTTCTCGAAAGCGTCAATGTGCATG
GTGCAATAAAAGCGACAATAATGGACAATGATGGTCAAAAATATACCAAA
AAGAGACCTTACCAATAAGTCTTTGGCATACACGACATCTCGTTTCCCGA
TCATATCCATAAACATCACGGAATTCTGAGCAAGTAGAATAACAATTGGG
GTGAACGACAGGAACACCGTTTGAACTAAAAATATCCATTTTCCTTTATT
TGAAGTTGGATTGAAGGAGCAGAGCCCGTTTGTCATCGTCGACATTCCGG
ACAAACGAGTGGAGACAGATCCTAGAAAATTAAAGAGATTGTGAAAATGT
GTTATTCTTTTTTATTTTGCTCTAAAACCGTGTCGGACAGATGTCCAGAA
TTAATGTTGGACAAAAAAACGGATCCAGGGAATATCATGAATCCTGGGCC
AGATTTTCAAAGTTCCATGTAAGTTCTATCTAGCTAGTTATTCTATATCC
AGCTAAAGACGTTAGATGTAGCAACCCATTTTTAATTTTTAATTGTTATA
ATCATTGTTATCGATTGTGGACCCGGGATTCATTCCGAAGTTGTCCCAAT
ACGATCCCGGCAAAATTCATGATGTGGAGACTTAACCAGTCTGTGTTTCA
ACTCCATTTTTTACCACCCAAATATATGGTCAATGGTATTACATTTGCTA
TTGGGAGGAACTGACTAAAAATGAACTTGAACCCATTAACAGGAGCCACC
GTAGAATTCCAATTCCGGAAAGGATATGTGACATGTCAAAAGCCAAATTC
ACGCAGGCCTCTGCCCACCTCACACCAATTCCAAACCAGGTATGGATGGA
CCACAGATCATTTCCGTCGCATTAGAGGAGATTCGATTGGCCTGGGAATC
TGGCGGACTTCAATGCAATTGAAAATTTGTGGGCTATCGTAAAAAAAGAT
CAAAGAGATGTGCATTTGCTCTCGACCAGATGCCTTATCGTAGGAGAACA
TTAACACCGGCTTGGAAAATCTATATTATCAGGTACTCGTTATTCATAGG
GTGGTGCCAGAACGAGTGGCTAAACTTTTGAATACGTTCAAAGATCATTT
TGTGTACTAGGTATATCCAACACAAATATATTTTACGGAGATAACCCTTA
ATTTGGAAGTATGCAAAACTCCATGCAGTGTGTCATACGCTGTGTAACGC
TGGAAGAGCAAAACAATAGAATAAAGGTGCAGTTGTGCAACTGTGCTGAT
CTTGCCTGAATCTTGACTGCTCTCCATTCTGTGCAATGTTGAAGGGCCGA
CTGTGTTGGATATTGAAATGTCAAATTAATCGTTAGAAAATCTCTCACGA
TTAAGTTAGTCCTTGCATGGCATCATTATCGAGCTTCACAAGCTCTACCA
TGAACCAGGGATATTACTGGCGCATTTCCCTGAACACGATATGTTTGCCT
CGTATATATTACCACCTTACTGTAGCTTGCATTTACGTACGTATTTTGTT
AGCAAAAGACTATTTACTCCCCCTCCGTTAACTTGCTGCCCATATTTTGC
TGTAAAAGTGACGTGGTGTCGTAACTGTTTTGATGGTCGTTTCATGAGAT
TAACGTGCATAAAGGTAAACCACATCATTTTGAGGCATATGGAGAGATCA
CTGCCAGGTATACACCTGATAAATGAAACACAAAATTTCACAGAGTCTGT
TCACGCCAGTTTCATTAGAATACGGACCAACACATAGCTGAGATGGCAAA
TCAGGTGTGTAAGATTGAAAAATACTTGAACATACAGGTAACATTCGTAG
AGGGCTCAGCACAGGGGCACAGACTAAGTAAGGCCTTGTAGGATATGTGA
CTCCGACGTACTACATCATTATTTTTGATACGCATAAGATAGAAAAATGA
GGGGTTGTTGGTCTTGAGAAGACTCAATTGCAGGTGTTTTGTTTGTTTGA
GGAACTTATTTGATGCATACACAAGATATATGAAATATGCAAGTCTCTAG
TGGTCTTTCCACACCAAAAGCTCCAACAAAATGTGGAAAAACATAGCTGG
CGTGGCATAGCTGGTGATTAAATACGGAAGGTTAGAATATCTTACATTGA
TAAACGATACTTTTAGAAAACTCAAGTGAAATTAATTAAACTCTAAATTA
TTTCATTCAACTAATTATGATAGAGGCAGAGGTAGAGATAACTTATCCGG
TACCTAAGGCGTGTATGACGGGCAAGGTAGTGTGAAAAATAGACATTTGC
ATGCTCGCAATCATTCGCCCTAAACTTAACTTCTAATTTGGCAGATGTCT
TCTGTACCAGTTTTTTGTTTTGTTTGCTTGGAAGGTCCCAAACATTTCTG
TCCAACAAGAAAACCCCTACTCATTCATAAATCAATAATTATTAGCAGAC
TTTGTTTATTTATCATGAAGTCCAGAGTGAAGCAAACAAAAGTTGCGAAG
TAACACAGCCAGGATTCGAACTTCTTCCAGCCAGTGTCACTGCAATACTC
ACTGACACTGTCTTGCTGTTGCTTCCTTTGAAAAAGTACGCCAAGAAGAT
ATATTTATCCACATTTGGGTGCTGTTGGAGTTAGATATCGGATACATAGT
CCTGAAACCTGGGCACACAAAAATGCACAGATGATGACACTGTAGTCAAT
ATAAATTTCAGATACCTTACTGAAAGAGCCTTTCCAGATTTTGTGGCCAA
ATGAATTCAAAACCTCGTGGTTTCAGATAACACGTGTTCTTACCTATGAT
TGTTTTCCCTCGCACATTTTGTAATGCCTTTGTTCTACAAAATATGACAA
AAATTGTTCGATTGGTGTTGTTAGGCCTCAATTACAATGTGTCAAGGCCC
AAACACTTGACCAACTTCGCTAATTGAGTCAGAGCGCTTAAGCATGGCCC
CTCTCACAGATTTTGATTATTCCATGGCAGCTTTGACCACCCATTCAGAG
AACCACCATCGCATATCTACAGTGAGTGAGCTCTAGCCTGCTAGCTCGCA
GGGATAAACGAAAGGAAAACTTCAATTTCTTCCTAGCTAGGAAGTGCGTT
GTTATGGGCTGGTTCTTTGGTAGACGCTGAAAACCGACTCCGCGACCAGG
GCGGAGTGAGCCTGCCTAGACCCTAGTTTTCTCCTAATTTCAGAGAGCCA
CACGCTTCAACTTCACAAGCATAGTCTTCTAGACACATGTGTCCGGCTCT
AACTTGGCCGCTATCCCCAGTACCGACTCTTGTCCTCGCGGCGCGCATCT
CAGAGTTGCCACGGAACGTCAACAATTGCCCCTTGACTCTGGCCTACGTG
CTTGCTACCTTGCTATGCCGAGTCAAAGTGAGCTAACATGCCCGAGAAAA
TGGCCGTGTCTCCCAGAAACAACATATTTCTTGGCCCGAGCACTTGAATG
GTTCTACCCCGTATAAGACGGACTTTTCCATTCCTTCTCCGCTTGCCCTG
CTTTTCCTCTCGCTCTTGCTGGCTGATCTGCTTGTTCGTTGTACGGCAGG
TTTGCAGTTTGTGGTTGGTTTTAAAGGAGTTCACACAAGACCGTCCTATT
TTCTTCAAATTCTAAGGGGTAGGAAGTCTTTTTTTATAATCTTGTTTGCA
TAAAGCATCCATTCATCTCAGATAGATCCCAGGTAAGATCAGAAGGCACT
TGGAAACAAGCATATCCAACGACTCTCTTTACATCGTCACGAAACACCGT
GTTCATCTACCTGACCCATTTTCTCCCTGTATCCGCTACCTGTCACTTAC
CATGTGACCTAAGGTGGGAAGAGATAGTTGTAGAAGGAGTTGGCTCTTTA
TTGCGAATGCAGCATCATCTCGTTCCATGTCTTTTTTTAGGTTGGACAAT
TGGGAGGAACATGAAATTAGAAGCACTCGCATTTGCTGTGGTTCTAGGGC
TCGCATTGGGCGACAAACCTAGTCCCGTTTTCAACTCTGGATCTTCTTTC
TCGTCGTCGGCGAGCGCCCCTCAGCACGAGCAAACATCCGACCAATATGG
CTCACCGAATGCTCCTGTGCACAGTTCTCCACAAAGTTCAAATCCTGATT
CGTACGGGTCTCCCCAGGCCCCAGCTCAAGACTCGTATGGGTCTCCATTG
GCCCCTGCCACGAGTTATACCCCATCAAAAGCGACCCAAGCAGGCGATTC
CTATGGATCTCCGAATGGAGCACCAATCAAAAGTGTTGTTTCGACCGGAA
GTTCAGGCCCAATTTCATCAGCGCCCTCTTCTGTGCCTGGTCAAGTAGGC
ACCCAAGGCTACTACTACTATTACTATCCAGTGACCAATTCGCAACCTTC
CAAACCTCACCACACTAGCTCTTCGAGTTATGTTTCTTCTCAACCATCTT
ACCACCATCCTTCGTCGTCAAATTCTGGAAAAGATAAAGGCATTTTGGGG
AAAATTGGAATCATTGCTGCAGTCATCATTGGACTGATCATTCTAGCCGG
CATCGTAGGGTTTGCCTCCTTTACAGCAAATCCCCTCGGGAGGTCAAACA
ACGACATGTTTGGATTTGATTACAGCCAATCTACTTTAGAAGATCTGACA
ACTTATGTGTACGATGCTGTAAAACTGTATCGATCCCTCCAATGATTGAG
CCATGCCAAATGTGTTGGAGTCCATGCAAAATGAGGTAATCTTATTCTTT
TTGCTATTTTCATGCAATTGTAGGTTCATAGTTTCTTGCATTTCAGAGAC
TGGAATGCTCAAAAGGATGAATGAGGTGAACAAGGCATCAAGTATTCGTC
TGCCTTTCTCCACCCCATGTAAAATGGGCGAGTGCTGCTAGTGTTACAGA
GATAATTGTGATAAATTTGTTACTGTTGAGCGATAGATAAATGTAAACAA
TTATGATCCGTCCTTATTTCAATGCATATCGCTAACCCAGTCTAAGCCTT
GGGAATCTAAGAACGGTAAGAATTATAATTCTTATAATTCCTTGATTAAA
CCTCGAACATATTGCTGGTTAAAGGAGTAGTTTAGATTGATGGTTTGCAA
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Synonyms
The feature 'vacuolar protein-sorting-associated protein 36-like isoform x2' has the following synonyms
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