cu zn superoxide dismutase, maker-scaffold144_size312663-snap-gene-0.6 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000003858 (supercontig:LSalAtl2s:LSalAtl2s2099:16738:20347:-1 gene:EMLSAG00000003858 transcript:EMLSAT00000003858 description:"augustus_masked-LSalAtl2s2099-processed-gene-0.0") HSP 1 Score: 53.9138 bits (128), Expect = 4.897e-8 Identity = 31/103 (30.10%), Postives = 45/103 (43.69%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKP-VACMFPFAFEGVTYDACTDAGADVPWCATSV 106 C FPF + G +N+C C TA P + + C C S S+ C++ ++C+FPF + V Y +CT + PWCATSV Sbjct: 353 CIFPFVYTGTSYNSCTNADYGSTFWCATAVGPGNVYTSYGSCSAECLSS-----------SSGSTACQTASGISCVFPFTYNNVKYSSCTLVESFFPWCATSV 444 HSP 2 Score: 52.7582 bits (125), Expect = 1.175e-7 Identity = 29/103 (28.16%), Postives = 45/103 (43.69%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKP-VACMFPFAFEGVTYDACTDAGADVPWCATSV 106 C FPF ++ +++C C TA P + + C C S S+ C++ ++C+FPF + V Y +CT + PWCATSV Sbjct: 84 CIFPFVYQSTSYSSCTNANYGSTFWCATAVGPGNVYTSYGSCSAECLSS-----------SSGSTACQTASGISCVFPFTYNNVKYSSCTSVESSFPWCATSV 175
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001617 (supercontig:LSalAtl2s:LSalAtl2s1283:79324:80509:-1 gene:EMLSAG00000001617 transcript:EMLSAT00000001617 description:"maker-LSalAtl2s1283-snap-gene-0.10") HSP 1 Score: 52.373 bits (124), Expect = 5.862e-8 Identity = 36/134 (26.87%), Postives = 56/134 (41.79%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKS-KPVACMFPFAFEGVTYDACTDAGAD-VPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLL 136 C FPF + G +N C + + C T+ +S+ C+ C + CK+ + V C FPF + GV Y+ CTD + V WCATS+ + + G C+ + D C D + Sbjct: 60 CIFPFIYTGVSYNGCTDVENNGVEWCATSLYANSEAQNYGNCNSNCKGQ-----------------CKTIEDVKCTFPFIYSGVFYNGCTDVDNNGVKWCATSLFANSEAQNY--GNCNSDCNDNCKTTQDVVC 174 HSP 2 Score: 48.9062 bits (115), Expect = 8.408e-7 Identity = 30/105 (28.57%), Postives = 49/105 (46.67%), Query Frame = 0 Query: 4 RCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKS-KPVACMFPFAFEGVTYDACTDAGAD-VPWCATSV 106 +C FPF + G +N C + + C T+ +S+ C+ C + CK+ + V C+FPF + G+TY+ CTD + V WCAT++ Sbjct: 116 KCTFPFIYSGVFYNGCTDVDNNGVKWCATSLFANSEAQNYGNCNSDC-----------------NDNCKTTQDVVCIFPFIYSGITYNECTDVDNNGVKWCATAL 203
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000009997 (supercontig:LSalAtl2s:LSalAtl2s655:209187:212093:1 gene:EMLSAG00000009997 transcript:EMLSAT00000009997 description:"maker-LSalAtl2s655-augustus-gene-2.3") HSP 1 Score: 53.1434 bits (126), Expect = 7.684e-8 Identity = 34/121 (28.10%), Postives = 51/121 (42.15%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDM 122 C+FPF++ G + C D+ C T + C C + S P +S + C+FPF + G+TY+ CT + V WCAT VD M+E+ G C+ Sbjct: 94 NYCEFPFKYNGISYEGCTNVDNGDEYWCSTKNYQNGAVHLYGNCKSECPRH---------STVPANSCGSTNGNPCVFPFVYNGITYNNCTTIENSGVYWCATKVDDTEKMIEY--GNCNQ 203 HSP 2 Score: 51.2174 bits (121), Expect = 3.603e-7 Identity = 33/121 (27.27%), Postives = 50/121 (41.32%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDM 122 C FPF++ G + C D+ C T + C C + S P ++ + C+FPF + G+TY+ CT + V WCAT VD M+E+ G C+ Sbjct: 300 NNCYFPFKYNGISYEGCTNVDNGDEYWCSTKNYQNGAVHLYGNCKSECPRR---------STVPANTCGSTNGNPCVFPFVYNGITYNNCTTIENSGVYWCATKVDDTEKMIEY--GNCNQ 409
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000007577 (supercontig:LSalAtl2s:LSalAtl2s437:8742:105237:-1 gene:EMLSAG00000007577 transcript:EMLSAT00000007577 description:"maker-LSalAtl2s437-snap-gene-1.27") HSP 1 Score: 52.373 bits (124), Expect = 8.170e-8 Identity = 36/127 (28.35%), Postives = 53/127 (41.73%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSF---CKS-KPVACMFPFAFEGVTYDACTDAGADVPWCATSVDGDGVMVEHFWGQCDMEAQ 125 + C FPF++ G H+ C S+ + +D T + CD C P + P CK+ + C FPF++ + Y CT G D PWC T V+G G F+G C + Sbjct: 75 QSCKFPFKYGGLTHHQCTTMGRSE------SWCMLNDGITFAYCDRDC-----------PGYEPAEDLMDTCKTTEGQICQFPFSYGSIIYHGCTLDGHDYPWCPTVVNGIG--EPEFFGNCTYHCE 182
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000010902 (supercontig:LSalAtl2s:LSalAtl2s729:156015:158047:1 gene:EMLSAG00000010902 transcript:EMLSAT00000010902 description:"augustus_masked-LSalAtl2s729-processed-gene-1.0") HSP 1 Score: 53.1434 bits (126), Expect = 8.840e-8 Identity = 38/133 (28.57%), Postives = 53/133 (39.85%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGC--FKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDP 134 C FPF + G +N C C T+ ++D C GC G +D + +C+FPF + G TY CT + PWCATSVD + +G C + C+A DP Sbjct: 115 CKFPFVYGGRTYNECTNVDYGSTFWCATSVGANNDLVNYGICRSGCTGVTSGNGCTXTDGN-------------SCIFPFVYNGKTYSTCTVVDNSGTPWCATSVDASRKYLT--FGNCG----NFCSADNDP 228
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001310 (supercontig:LSalAtl2s:LSalAtl2s1219:26590:28273:1 gene:EMLSAG00000001310 transcript:EMLSAT00000001310 description:"maker-LSalAtl2s1219-augustus-gene-0.2") HSP 1 Score: 51.6026 bits (122), Expect = 1.027e-7 Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0 Query: 71 CKSKPVACMFPFAFEGVTYDACTDAGADVPWCATSVDG 108 C++ AC+FPF + GVTY ACT + +PWCATSVDG Sbjct: 22 CQTASGACVFPFKYLGVTYSACTLQDSAIPWCATSVDG 59 HSP 2 Score: 49.2914 bits (116), Expect = 6.530e-7 Identity = 33/125 (26.40%), Postives = 50/125 (40.00%), Query Frame = 0 Query: 4 RCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKP-VACMFPFAFEGVTYDACTDAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDG 127 C FPF ++ ++ C C TA + + C C S S+ CK+ V+C+FPF + V Y +CT + PWCATSV+ +G C+ + G Sbjct: 83 SCVFPFVYQSTSYSNCTNADFGSTFWCATAVGAGNVYTSYGTCSAECLSS-----------SSGSTACKTTSGVSCVFPFTYNNVEYASCTLVESSFPWCATSVNNG--EYNGSYGYCEASCEVG 194
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000006207 (supercontig:LSalAtl2s:LSalAtl2s339:71387:73151:-1 gene:EMLSAG00000006207 transcript:EMLSAT00000006207 description:"maker-LSalAtl2s339-augustus-gene-0.17") HSP 1 Score: 52.7582 bits (125), Expect = 1.054e-7 Identity = 32/114 (28.07%), Postives = 49/114 (42.98%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDAGAD-VPWCATSVDGDGVMVEH 115 + C FPF ++G+ + C D C T + C+ GC P+ + P P ++ C FPF + G TY+ CT + V WCATS++ D M + Sbjct: 229 ENCQFPFSYDGQTFHQCTTVENGDQPWCATYVNERRETEKWGNCEAGC-----PIGTTVPGACPTTN-----GQQCRFPFVYRGQTYNKCTTVDYEGVYWCATSLEADNEMGNY 332
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000012118 (supercontig:LSalAtl2s:LSalAtl2s86:636325:650284:1 gene:EMLSAG00000012118 transcript:EMLSAT00000012118 description:"maker-LSalAtl2s86-augustus-gene-7.20") HSP 1 Score: 53.5286 bits (127), Expect = 1.151e-7 Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDAG-ADVPWCATSVD 107 +RC FPF + G E+N C + C T + D + + C C +E + +P S+ + C+FPF + GV+Y +CT WCATSVD Sbjct: 977 RRCIFPFRYSGSEYNECTTIDFGSNFWCATQVATTGDVTSYALCGXTCPRES--------TLAP-SACATTGGQKCIFPFMYNGVSYASCTTVDFGTTKWCATSVD 1073 HSP 2 Score: 51.6026 bits (122), Expect = 3.809e-7 Identity = 35/110 (31.82%), Postives = 50/110 (45.45%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACT--DAGADVPWCATSVDGDG 110 K+C FPF + G ++ C ++ C T+ T S + T C C + P+ + C+FPF + G TYDACT D G+ + WCAT V G G Sbjct: 14 KQCVFPFTYGGVTYSACTTVDNGNNPWCATSVTSSGEYQTYDDCSSSCQAATTVTSDGCPT---------TNGERCVFPFKYNGKTYDACTTEDFGSTM-WCATQVYGSG 113 HSP 3 Score: 51.2174 bits (121), Expect = 5.283e-7 Identity = 35/110 (31.82%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACT--DAGADVPWCATSVDGDG 110 K+C FPF + G + C ++ C T+ T S + T C C + P+ + C+FPF + G TYDACT D G+ + WCAT V G G Sbjct: 222 KQCVFPFTYGGVTYTACTTVDNGNNPWCATSVTSSGEYQTYDDCSSSCQAATTVKSDGCPT---------TNGERCVFPFKYNGKTYDACTTEDFGSTM-WCATQVYGSG 321 HSP 4 Score: 50.8322 bits (120), Expect = 6.330e-7 Identity = 35/110 (31.82%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACT--DAGADVPWCATSVDGDG 110 K+C FPF + G ++ C ++ C T+ T S + T C C + P+ + C+FPF F G TYD CT D G+ + WCAT V G G Sbjct: 487 KQCVFPFTYGGVTYSACTTVDNGNNPWCATSVTSSGEYQTYDDCSSSCQAATTVTSDGCPT---------TNGERCVFPFKFNGKTYDTCTTEDFGSTM-WCATRVYGSG 586
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000004580 (supercontig:LSalAtl2s:LSalAtl2s239:520211:527283:-1 gene:EMLSAG00000004580 transcript:EMLSAT00000004580 description:"maker-LSalAtl2s239-snap-gene-4.10") HSP 1 Score: 52.373 bits (124), Expect = 1.818e-7 Identity = 36/115 (31.30%), Postives = 49/115 (42.61%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNF----SDPSFSPVSSFCKS-KPVACMFPFAFEGVTYDACTDAGADVPWCATSVDGDGVM 112 ++C FPF++ G +NTC C T+ T + + C+ C P P+ P CKS C+FPF + G YD CTD WCATS D G + Sbjct: 209 QKCVFPFKYNGITYNTCTTIGNHGVPWCATSLTIDGNVNSYGNCNVNCPITITPTTKPPIPVGPTTKPPVRGCKSLSGSNCLFPFRYGGXIYDGCTDVDDSRLWCATSTDSHGFV 323 HSP 2 Score: 50.447 bits (119), Expect = 7.648e-7 Identity = 45/156 (28.85%), Postives = 67/156 (42.95%), Query Frame = 0 Query: 4 RCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFC----KSKPVACMFPFAFEGVTYDACTDAGAD-VPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLLEPMEPEPEQPQPMGAETQ 154 +C FPF + +NTC D+ P W + D K +N+ + +SFC S C+FPF + G+TY+ CT G VPWCATS+ DG + + +G C++ C P +P P P+G T+ Sbjct: 154 KCIFPFIYSEVIYNTCT------DIGNNGVP------WCATSVD----KNNIVLNYGN-----CNSFCDICQSSNGQKCVFPFKYNGITYNTCTTIGNHGVPWCATSLTIDGNV--NSYGNCNVN----CPITITPTTKP-------PIPVGPTTK 275
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000002861 (supercontig:LSalAtl2s:LSalAtl2s1655:58067:61341:1 gene:EMLSAG00000002861 transcript:EMLSAT00000002861 description:"maker-LSalAtl2s1655-augustus-gene-0.2") HSP 1 Score: 49.6766 bits (117), Expect = 2.068e-7 Identity = 33/123 (26.83%), Postives = 52/123 (42.28%), Query Frame = 0 Query: 4 RCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACT--DAGADVPWCATSVDGDGVMVEHFWGQCDMEA 124 C FPF + G + C + L C T+ + D C C S ++ +C+FPF + G TY+ CT D G+ + WCATS+ +G + +G CD+ + Sbjct: 33 NCIFPFNYNGVRYVKCTNVDYGNTLWCATSLFSNGDAQGYGTCANNCEDSAIKTTVKSSSKKACNTV---NGASCIFPFKYLGKTYEECTNVDYGSTM-WCATSLYSNGEY--NGYGICDLNS 149
BLAST of cu zn superoxide dismutase vs. nr
Match: gi|1325285452|ref|XP_023327446.1| (uncharacterized protein LOC111700680 [Eurytemora affinis]) HSP 1 Score: 102.834 bits (255), Expect = 7.031e-21 Identity = 65/199 (32.66%), Postives = 97/199 (48.74%), Query Frame = 0 Query: 2 SKRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKE-GAPMNFSDPSFSPVSS-FCKSKPVACMFPFAFEGVTYDACT-DAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLLEPMEPEPEQPQPMGAETQFQYEDVVADLALEQVDPDSPVTIKGQITGISPPGSHAFTVYEG 197 S RCDFPF+ EGE C+ E+ D T +++ C+ GCF+E G+P+ F+ S V + FCK+K C+FPF +EG Y CT D PWCA V+ G +V++ WGQCDM D +A + E E P+P F+ + +L Q P+ + ++G + G+ V +G Sbjct: 25 SHRCDFPFQREGEVWYECMPGEENSDR--HYCITQLGEKYVTGVCNGGCFEEDGSPVVFNSTSEDAVMAVFCKTKKSPCIFPFIWEGREYRECTTDGDTPFPWCALEVNDAGELVDNRWGQCDMSTCDPVSA--------ADTESEPPKPKSVSVSFK--EFSGELVFSQTTPEDALQVEGLLEGLPEDSDLQLAVVQG 211 The following BLAST results are available for this feature:
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of cu zn superoxide dismutase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of cu zn superoxide dismutase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold144_size312663:57830..63969- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold144_size312663-snap-gene-0.6 ID=maker-scaffold144_size312663-snap-gene-0.6|Name=cu zn superoxide dismutase|organism=Tigriopus kingsejongensis|type=gene|length=6140bp|location=Sequence derived from alignment at scaffold144_size312663:57830..63969- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'cu zn superoxide dismutase' has the following synonyms
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