cu zn superoxide dismutase, maker-scaffold144_size312663-snap-gene-0.6 (gene) Tigriopus kingsejongensis

Overview
Namecu zn superoxide dismutase
Unique Namemaker-scaffold144_size312663-snap-gene-0.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000012444 (supercontig:LSalAtl2s:LSalAtl2s914:179834:194591:-1 gene:EMLSAG00000012444 transcript:EMLSAT00000012444 description:"maker-LSalAtl2s914-snap-gene-2.15")

HSP 1 Score: 51.2174 bits (121), Expect = 2.156e-7
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 0 
Query:   78 CMFPFAFEGVTYDACT--DAGADVPWCATSVDGDGVMVEHFWGQCDMEA 124
            C+FPF F+G  Y+ CT  ++ +  PWC+T V   GV ++  WG CD+ +
Sbjct:   27 CVFPFIFKGKQYNGCTILNSFSLTPWCSTKVTSSGVHIKGNWGDCDLTS 75
[Close]
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000006555 (supercontig:LSalAtl2s:LSalAtl2s359:421166:421803:-1 gene:EMLSAG00000006555 transcript:EMLSAT00000006555 description:"maker-LSalAtl2s359-snap-gene-4.21")

HSP 1 Score: 48.1358 bits (113), Expect = 4.222e-7
Identity = 36/124 (29.03%), Postives = 54/124 (43.55%), Query Frame = 0 
Query:    3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDAGAD-VPWCATSVDGDGVMVEHFWGQCDMEAQ 125
            + C FP +F       CV+  + D   C T+        T   C+  C     PM   DP+   +++        C+FPF + GVTY+ CTDA  +   WCA +         HF  +C+M +Q
Sbjct:   28 QNCVFPSKFREMTLTKCVK-ADYDKYWCATSNKADGSVDTYGDCNADC-----PMEVHDPTKECITT----GNYQCVFPFEYNGVTYNKCTDADNEGKKWCAINKYPXSEQAYHF-EECNMSSQ 140
[Close]
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000000266 (supercontig:LSalAtl2s:LSalAtl2s1040:2470:5441:-1 gene:EMLSAG00000000266 transcript:EMLSAT00000000266 description:"maker-LSalAtl2s1040-augustus-gene-0.7")

HSP 1 Score: 50.8322 bits (120), Expect = 4.730e-7
Identity = 40/131 (30.53%), Postives = 60/131 (45.80%), Query Frame = 0 
Query:    2 SKRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAAL 131
            S+ C FPF + G E++TC          C  A + S    +   C   C KE         + +P S+   +    C FPF + GVTY  CT    +  PWC+TSV+   + V ++ G C+     GC+A+
Sbjct:  100 SRPCVFPFTYNGVEYSTCTTVDFGSTSWCAVAVSSSDVVTSYGICSSSCPKE--------STLAP-SACGTTDGRGCKFPFKYGGVTYSDCTTIDNSGTPWCSTSVNAATLEVINY-GTCNSNCL-GCSAV 219
[Close]
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000011666 (supercontig:LSalAtl2s:LSalAtl2s80:906140:911870:-1 gene:EMLSAG00000011666 transcript:EMLSAT00000011666 description:"maker-LSalAtl2s80-snap-gene-9.32")

HSP 1 Score: 50.447 bits (119), Expect = 8.306e-7
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   78 CMFPFAFEGVTYDACT--DAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGC 128
            C+FPF +EG T++ CT  DA     WCATSV+  G ++E  WG C    ++GC
Sbjct:  107 CVFPFIYEGETFNKCTSKDANEGSVWCATSVNETGHVIEGQWGDC----KEGC 155
[Close]
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000009447 (supercontig:LSalAtl2s:LSalAtl2s607:132206:134702:1 gene:EMLSAG00000009447 transcript:EMLSAT00000009447 description:"augustus_masked-LSalAtl2s607-processed-gene-1.3")

HSP 1 Score: 49.2914 bits (116), Expect = 8.582e-7
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0 
Query:   78 CMFPFAFEGVTYDACT--DAGADVPWCATSVDGDGVMVEHFWGQCDM 122
            C+FPF F   TY+ CT  ++  +  WCA  VDG+GV+++  WG CD 
Sbjct:   82 CIFPFTFNETTYNRCTAVESVNNKTWCALEVDGNGVVIDGKWGDCDF 128
[Close]
BLAST of cu zn superoxide dismutase vs. nr
Match: gi|1325285452|ref|XP_023327446.1| (uncharacterized protein LOC111700680 [Eurytemora affinis])

HSP 1 Score: 102.834 bits (255), Expect = 7.031e-21
Identity = 65/199 (32.66%), Postives = 97/199 (48.74%), Query Frame = 0 
Query:    2 SKRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKE-GAPMNFSDPSFSPVSS-FCKSKPVACMFPFAFEGVTYDACT-DAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLLEPMEPEPEQPQPMGAETQFQYEDVVADLALEQVDPDSPVTIKGQITGISPPGSHAFTVYEG 197
            S RCDFPF+ EGE    C+   E+ D       T   +++    C+ GCF+E G+P+ F+  S   V + FCK+K   C+FPF +EG  Y  CT D     PWCA  V+  G +V++ WGQCDM   D  +A         + E E P+P      F+  +   +L   Q  P+  + ++G + G+         V +G
Sbjct:   25 SHRCDFPFQREGEVWYECMPGEENSDR--HYCITQLGEKYVTGVCNGGCFEEDGSPVVFNSTSEDAVMAVFCKTKKSPCIFPFIWEGREYRECTTDGDTPFPWCALEVNDAGELVDNRWGQCDMSTCDPVSA--------ADTESEPPKPKSVSVSFK--EFSGELVFSQTTPEDALQVEGLLEGLPEDSDLQLAVVQG 211
The following BLAST results are available for this feature:
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000124442.156e-740.82supercontig:LSalAtl2s:LSalAtl2s914:179834:194591:-... [more]
EMLSAG000000065554.222e-729.03supercontig:LSalAtl2s:LSalAtl2s359:421166:421803:-... [more]
EMLSAG000000002664.730e-730.53supercontig:LSalAtl2s:LSalAtl2s1040:2470:5441:-1 g... [more]
EMLSAG000000116668.306e-745.28supercontig:LSalAtl2s:LSalAtl2s80:906140:911870:-1... [more]
EMLSAG000000094478.582e-744.68supercontig:LSalAtl2s:LSalAtl2s607:132206:134702:1... [more]

Pages

back to top
BLAST of cu zn superoxide dismutase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of cu zn superoxide dismutase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325285452|ref|XP_023327446.1|7.031e-2132.66uncharacterized protein LOC111700680 [Eurytemora a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold144_size312663supercontigscaffold144_size312663:57830..63969 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold144_size312663-snap-gene-0.6-mRNA-1maker-scaffold144_size312663-snap-gene-0.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold144_size312663:57830..63969-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold144_size312663-snap-gene-0.6 ID=maker-scaffold144_size312663-snap-gene-0.6|Name=cu zn superoxide dismutase|organism=Tigriopus kingsejongensis|type=gene|length=6140bp|location=Sequence derived from alignment at scaffold144_size312663:57830..63969- (Tigriopus kingsejongensis)
GCAGGTGCCTGTTCCATTTTGTCGAAACGATGTGATTTCCCCTTTGAATT
CGAGGGCGAAGAGCACAATACCTGTGTGGAACACCCAGAGAGTGATGACC
TGGTGTGCCGCACAGCCCCCACGCCATCCTCTGACAGATGGACCTTGAGT
CCTTGTGATGAAGGATGTTTCAAAGAAGGAGGTATGACAAGCCTACCTAA
ATGCGCACAGCAGACCACTCAACCCTCTCTTCATCTCTCTCGTTCCAGCT
CCAATGAACTTCAGTGATCCCTCGTTTAGCCCGGTCTCCTCGTTCTGCAA
GAGCAAGCCTGTGGCCTGCATGTTCCCCTTCGCCTTCGAGGGAGTCACGT
ACGACGCTTGTACGGACGCGGGCGCGGATGTGCCATGGTGTGCCACCTCC
GTCGACGGGGACGGGGTTATGGTGGAACACTTCTGGGGACAATGCGACAT
GGAGGCCCAGGATGGTTGTGCCGCCTTGACGGGTAATTTGGATTTGATTA
ATTGTGTCCCGCCAATTTCAAGGTTGGTTGGATCTCAAGAGTTGGATAGA
TATTTCGAGTTTATTTCCTCCAGAGACGTAGGTAGGCCTTCTTCTGGCCT
AGCTGTAGGCCGTGGGAAAAGTACGGGGTGATTGCTTTCACTTTGAATAT
GAATGGAAGACTGACGGTTCCTTCCTTTTGGCAAGCTCTGGGATGGGCTG
AAGAGCAGATCCAGCCGCTCCATTTTACCATCTGTGTACTAGTATGAGCA
GGACTTCAGTGTGTGGGCCCGAGCCAAGGTTGGTTTTTAAGTGCAGTGAG
CACGAAGGCCGAGCCAGGTTATCGAGGAGTTAATGGTCGTCTTCCACAAC
GGAATCAATGCGATGGCCAACTGGACAGAGGCGATGGCCTCGCTCTCGCC
GAAAGTCGAAGCGAGATGACCTCGTTCAAGTCAAACTTGTTGAGAATGTC
GATCTTGAGAGCGACTCGTCCTTGTCCCCCATTGATGATATCGTCGTGAG
AGTGGCGAAAGGCCACGAAGACATAATTCAATTGCAAAGGACGAACGGAC
TCTCGAGTCGAAGACGGAGAACGAGAAAGTCAAGAGCGGGAAGCTTTTTC
ACTCTGAGAGAGCTCACTACTCCTTGGATTTTTTTCTAACTCCAAGGTTA
TTTTCAAGCAATTAGGAGAAGTTTACGACAGGGGCGATAAGCAGTGCTTT
CCCTCTGACATAAAAAAGCCTCCGAGGCTGTAGTCACCCATTCCAAACCC
CGAGGCTATTTGTCTTCCCTCCCCGAGAGTGAAATTCATTCGTTTCATGC
ATTCAACATGAGTAAATAGCAGCACGTAAGAGCTATGACAGCTCGGGAAG
TGTTTACGTCCACTCTCAGCGATTCGATTCGTCTTTCCCCCTGCCTCACA
TGGCTTCGGCAGACAAATGAGAAATGATCGGAAATCGCAGGTCCCGAAAT
ATATTACCAGGTTGTTTTCCGGGAGCCCAAGCATTAGGACTCGCGCTAAA
TCGGGCGGTATGTTATTTTTCTTGTAATTTTCCCCTAAGCTGAGCAGAAA
AGCGAGGCCAGGCGTTAATGCGATCCCTTTCCAGATGAGTTATTGCTCGC
TTCACTCTCCCCCTTAAGTATTTTCCTCTTCGCTCCAGTTGTCTGATTCT
TCCTGCCTGAATGATAAATACTAAACGGCACGCGAGCATTAATCCAGGAG
AAAATCCCTTGGCATAGGGTTGACGGAAAGACCCCAAGACATCTTGCGCT
ATTATCATCCCTCATCTCCCATTTTTACAGACCCTCTCCTGGAACCCATG
GAACCGGAACCGGAACAGCCCCAACCCATGGGTACGTATTCCTGCCACGG
CTAATGCACTCTGCATTAGTCTCATCCGTCAAAAGGGAGTTCCGCAAGGG
AACAGAGTTGCGTCACGTGTATCCTAGCTCGAGTGGAGTTAGGAACAAAA
CAGTGGTCGAATGGAACGCGACTGGAGCTAATCGAACATGCTTGGAGAAA
ACATTAGTGTGTGCCATTGAGCTGGCTCACAAGCTCGTAGCAATCCCACG
TTGCCGTGGCTTGCGTCGTCTTTGGCCCATCAAGTTGTTGTATTTTGTCC
AGTATTTTTTCCCCCAGAAGGCCTGGTAAACTTAGCAATTGGATAATGAT
GACGACTCTAGAGTGCAGCCAATGGGCTGGATCCAGTTTTCTGCATCACT
TGCGCTCTGTTTACAAATGTTGTGCACTTGATTCCATCCTTTCAGTGGGA
ACGGGATCGAGCTGTCAGCTGGGCAGGCCAAGACCAATTATGTAATCTAA
GCGGGCGACTTCTTAGCCTGGACCGGGTTAGTCGTCCTGTGTGCCACTCA
GATCAACAACACCATGGAATTCATTTACCAAATATTTGACAACACCACAT
CAAGTGAGCCAAATCGAGTTCATCTGACCCCGAGAAATGCGACTTTCTCC
CTTCCAACCATCGTGTCCAGACCAAGCACTTATCTTTCACCAGGGAGTTG
GGTCCATCCAATATCCTTCCTCCCTTTGGTGACTTCAATTTTGTCAATAG
ACGACTCCTTGACACTCTTAACTCCACTCGAAATCCCCTCTTGACGTGAC
CACATAAATACATACAGGGGAGGAGGAGGACATCGGCTGTTCTCTATCTT
TCCGTCTTTCGTCTCCCTCAGGCGCCGAGACTCAGTTCCAATACGAGGAT
GTGGTGGCCGATTTGGCCTTGGAGCAAGTCGATCCAGACTCACCCGTGAC
TATCAAGGGACAAATCACTGGGATTAGCCCACCTGGATCCCACGCATTCA
CAGTCTATGAGGGGACTTTGGACGACACCAGTAACTGTTCCACGATCTTT
GAGGTAAGCCCAACTTCGCCACTCCAAGGCTTTTTTGCTCGCGTCTGATT
TGAATTTATGTTGCCTGCTTGGAGTCCTTTTTGCCGCATTTGGCATCGGG
AGGGGGAAAAAGAGTGACACATTTTTGTGGCATCTCAACCAGACGATGAA
TTTCGTGGCTTGTAACAATGGTGGCGGGAGACAACAATGGAACAAGGCGT
GGTTATTGAGTATGCTAAATACTTGCCTGCATTGTCGTTGGAGGCCAAGT
CGGGGAGATGACTATAGGGTTCATTTTAATTCAGACGCAACCAAGACTTC
CCTTACCCAAGTTAGGGCCAACCATGACTGCCCAATTTGTGTTTAGTGGA
AATTTGCATGGACAGCTTTTATTGATAACTAAACTTGCCGTCTCTGTCAG
TTTTTGATCGAACTGGCTCGTCCATGTGGCCTAACTTTATGGGCTCGTCA
TAAATTTCCCGAATGGTCTCTTTAAATGCTGGCCACTCACTTCGAGGACA
ATGTTCTCATGCTTGCTTGACGTACAAATTTGTTGGACCTGACACGGTTC
GTTCTTCCCAAAGGTCTCTCACCCAATAGTGGCTCTGAAGACCAGAATGG
GGGTCGTTTCCCCTCGCTCTCTGGTGCCTTGTAAAAAAATTGAGACAGTT
CGATGAGGGAGCCGAGGGGAATTAAGGCCAGTCAATGACAGACTAACCCC
GGAGAAAAAGAGATGACATTTACCTGGCTAGCTAATCAATAATTCAATAG
CGTACGCGCTGTTGGCGAAACAAAGCACCCTGACATCTTCACGTATGAGG
CCAATGAACTTTGGATGGCTATTGATGGCTGGACCACTAATATGGGAGTG
GATTCACATTGCAGGGAACGAACTCCACCCGGTTGTCCTCGTTTGGTGCG
TTCTCTTCGGACTCGGAGGGCGTGGCTCAGGTGGACTTGGGCTCGTCGGA
CGTATCTCTCTACGGTGAAGAGGGCATCTTGAACAAGATCCTGCTAGTGT
ACACGCGTGAAGGCGAGAACGAGGCCTTGGTCGGATGCGGGCCGATTATG
GAACCCTCCTTGGACCTCACCCTGATCATCATCATCGTCCTCGTCGTGGT
GATTGTCTTACTCCTGCTTCTCATCTGCTGCTTGTGTTTTTACTGCTGTA
AAAGGTGAGTGATTCGACTGGGCACTCCCTGGATCTGGGCCATGGTCATC
CTGGATGGTTCAATTTTGCAGGAAACGCGGGAAGGGCAAAGGCAAGCTGC
CCTCAGATGAGACGGACCTTCCTTACGCGAATGGTTCCACCAAGAAGCCT
TTATACGATGAGCTATCCATCCCATTCATCGACGCCAGCCCCGCAGCCAC
GCCCAAAACGGGGCGGAGCACCGAGAAACTCTCGTTCTTCCATAGGTCGT
CGAGCGTGGCCAGATCTCGTGGGTCGCTATCACGTAAGCTCACTGGCCAC
GCCTTCCAACTTGACTTGCTCTTCAACGTTCTCGAGTTCTCAGAAATCAG
TTCCATTGCTTTTTTGCCTTTTAAATGCAACTCCTGTTAGAGTTTCTGGT
TCCCAAATAACGTTTGCTCTAGCGTATGATTTTGTATTGCTTTATTGCTT
TCGTTTCAATTCATTATATTCCGTTCATTTCCTTTTTTACAGAAGAATCC
GTGTAGAATCTTAGAAATCTAGTAGATCCTCTAGTTTCCATGATATTTTC
CATGGAACCCCAAGTGGCCTAAGTCAATCCGAGCAGTAAGTAGCCATCTA
TCCTCGCCTCATCCTCCTCAATGGCTCGTGATCCCTTCAGGGCCACACCC
ACGAAACTTGGCGGAACATTAGCTCCAAAAGTGTGCGCAACCTCGTCTGT
CTTGCACCACAATTGTCCTTTGTCCCGTAGTTGAATGGCACCAAATGACA
CCCATGTTGTTATGCAAATGGCGTGCATATTGTGTATCAGGCCTGTATTG
TGTACATTTGTGGTCCTGTGTGCTCACTGCTTGAATGAGCAGCCTCATTG
ACACTCGGCTCACCTTTCCAGATCCACCCCTGTACCCACCGCCTCCTCCA
CCCGCGATGATGACACAAGAAATCAACTGGAAAGGGGCAGAAAAGAATGG
TCCTCGTGATCTTGTGTGAGAGTGCTGGCCTCCGAAGGCTGCTGCGGGAA
TCTAACCGAACTAAAGGCACACGGTGCCAGAGTGTGATAATGAAAGCAAA
AACACAAGAAAGAAAATCCGAGCATCTCACCCAGGGATCCCCCTTTTGGT
TTTGGACGAAATTGTATAACAATAATTAACACCAGCGGGCCGCACCAACT
TCAGCTTTCTAGTGTGCCATAGGAATTTCTTCCCAATTGAAATGAATATC
TTGTGTAATGCGAAGAGAGCAACAATAACAACCCGCTAGTCTGCTTCTCC
AAATTCACCTCCTCCTCCCATCGCCTCCGCCTCCGAGAGGACACTATTAC
TCTCAGCTTCACCTATTTGTCGCTTGCATCGGGCTAATTTCTGAAGTTGC
TCCTGGTCAGATGCCGCTACTTACCACGTGTCACTTCTTTGTTCAGCGAC
AACCGCCAACGCTTTTATCCCATTATGTTCCAAATCGTACGCCCAAATCC
CGTCCTACAAGCCCAGTCCTGACAAAATCTGGCGGGGCAATGCCCATCTG
GTTAGGGGGTTGATATCCACCCTCCTTAGGTTTCCAGCTCTATTTTTGTA
ACCCATTGGGGGAAAGATTGGAAAATATTGGCACCTAATTTGTTACTTAC
CCTACGTGTTTCTCTAATCGGGTAGTTCGCTGGCTAGAGTTTCACAAATC
AACCCCATTGAGGATCAGCCATCACGACACTATGGTGGTATTTGGCACCT
TGTTCTTTATTATCATAATTATTGGATTAGTGCCTTGTTTGGAAGAAACT
ATCACACCTAAAACGAACAGAAGAATAAAATATGAATGTTTTACGACGGG
TGCCTACTATCATTGCATTTTAGCATAGAGATTGTCAATGTCCGTCTGAT
ATTCTGTTTGAATTTGCCGCCGTCGGATTTTCAGGGCGGCTGTCACCAAT
CCGGACTCGGGCGTCCAAGGTTCAGAGACCAAAACAAGACCGCGAGGAAT
TTCAAACTTTTCCAAGGAGGATGATCCGTGCTTTTGGATGGACTCCAAGA
CGGCTGACAATACACTTGACGATTTGCAGGCTGCTGCGAACGGCATGGGC
ACGAGCGAGTCGTGCTTCTGGATGAACTGGGCCAGATTGTTCTCCTCGGC
CACCACGATGGCGATGGTGAAGGTTTTGGACGAATCGGCG
back to top
Synonyms
The feature 'cu zn superoxide dismutase' has the following synonyms
Synonym
Tk07266
Add to Basket