small mechanosensitive ion channel protein, maker-scaffold146_size311726-snap-gene-2.18 (gene) Tigriopus kingsejongensis

Overview
Namesmall mechanosensitive ion channel protein
Unique Namemaker-scaffold146_size311726-snap-gene-2.18
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of small mechanosensitive ion channel protein vs. L. salmonis genes
Match: EMLSAG00000011277 (supercontig:LSalAtl2s:LSalAtl2s772:344077:345970:1 gene:EMLSAG00000011277 transcript:EMLSAT00000011277 description:"maker-LSalAtl2s772-augustus-gene-3.31")

HSP 1 Score: 77.7962 bits (190), Expect = 1.424e-19
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0 
Query:   12 PPTPSGTCAKYLRYGAVEMKPFQPGQRYRSRRDKEQSVRGYRAVSEGISATAAEIENQSRRHQSMERHGWTSVAFHNSTVGYTSERLAGNAWQHNYAYNRQAFPPIGRPGQPGLPHAYRYFG 133
            P +PS T  KY+RY +   K F+PG  YRS  + E  V GY+ +   + A+  E++ QS+   S +R         NS VGYTSER+ GN W+H++  +   F  +  P  P L   +RY G
Sbjct:    7 PQSPSLTAMKYMRYSSGTEK-FEPGVLYRSHMNMEAHVHGYKNLRREMRASTEEMDWQSKYRSSPDRIITPVCVLRNSIVGYTSERVCGNNWRHDFVPSSVRF-SVATPRNPYLTRTFRYMG 126
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BLAST of small mechanosensitive ion channel protein vs. L. salmonis genes
Match: EMLSAG00000006077 (supercontig:LSalAtl2s:LSalAtl2s32:112309:112878:-1 gene:EMLSAG00000006077 transcript:EMLSAT00000006077 description:"maker-LSalAtl2s32-snap-gene-1.27")

HSP 1 Score: 44.669 bits (104), Expect = 5.524e-7
Identity = 29/93 (31.18%), Postives = 48/93 (51.61%), Query Frame = 0 
Query:   14 TPSGTCAKYLRY-GAVEMKPFQPGQRYRSRRDKEQSVRGYRAVSEGISATAAEIENQSRRHQSMERHGWTSVAFHNSTVGYTSERLAGNAWQH 105
             PS T  KYL +   ++ +    G  YR++ D E+SVRGY+ V +GI    +E+E    + + M R  W  +    ST G ++ +L  +  +H
Sbjct:   14 VPSNTAYKYLHHTKVIDQEDVPVGASYRAKSDMEKSVRGYKEVQKGIQRRISEME----KLKXMNRIEWPII----STSGVSASKLNQSGQEH 98
The following BLAST results are available for this feature:
BLAST of small mechanosensitive ion channel protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000112771.424e-1936.89supercontig:LSalAtl2s:LSalAtl2s772:344077:345970:1... [more]
EMLSAG000000060775.524e-731.18supercontig:LSalAtl2s:LSalAtl2s32:112309:112878:-1... [more]
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BLAST of small mechanosensitive ion channel protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of small mechanosensitive ion channel protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold146_size311726supercontigscaffold146_size311726:219431..220047 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:membrane
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold146_size311726-snap-gene-2.18-mRNA-1maker-scaffold146_size311726-snap-gene-2.18-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold146_size311726:219431..220047+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold146_size311726-snap-gene-2.18 ID=maker-scaffold146_size311726-snap-gene-2.18|Name=small mechanosensitive ion channel protein|organism=Tigriopus kingsejongensis|type=gene|length=617bp|location=Sequence derived from alignment at scaffold146_size311726:219431..220047+ (Tigriopus kingsejongensis)
GTATCCTTGAGGTTATACATTGTGAGTGTGCCGGCTGCCATCTGACCGAG
ATCATGAGTGGCAACTCTCGACTTCCCCCCACCCCTAGTGGCACGTGTGC
CAAGTACTTGCGGTACGGAGCAGTCGAGATGAAACCGTTCCAACCCGGTC
AGCGATACCGAAGTCGACGAGACAAGGAGCAGAGCGTGAGTATCCGAATC
GCCATAATCACCATGAACCGCAGAACTGTCGAGGACTGATTAACCGGATG
TATTGGTTTGGACTTAGGTTCGAGGCTACCGAGCAGTCTCGGAAGGTATA
AGCGCCACCGCTGCCGAGATCGAGAACCAAAGTCGCCGCCATCAATCAAT
GGAACGCCACGGCTGGACTTCCGTCGCCTTCCACAACTCGACCGTGGGCT
ACACGTCGGAGCGCCTGGCTGGGAATGCGTGGCAGCACAATTACGCATAC
AATCGGCAAGCCTTCCCACCGATTGGGCGCCCCGGTCAGCCCGGTCTACC
CCACGCCTACCGCTACTTCGGTACCCGACCCGTGTCCTGAGGGTCCGAGC
GGGCACAAGCCCTAGTACGCCCGCTACGCCCGCCGCCCTCTGTTCATGTG
TCTGGCCGCGTGAGAAT
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Synonyms
The feature 'small mechanosensitive ion channel protein' has the following synonyms
Synonym
Tk07052
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