achain crystal structure of engineered northeast structural genomics consortium target, maker-scaffold147_size311475-snap-gene-2.16 (gene) Tigriopus kingsejongensis

Overview
Nameachain crystal structure of engineered northeast structural genomics consortium target
Unique Namemaker-scaffold147_size311475-snap-gene-2.16
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Match: gi|402550781|pdb|4GMR|A (Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. >gi|402550782|pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266.)

HSP 1 Score: 63.5438 bits (153), Expect = 6.948e-9
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0 
Query:   43 PLHRSAAIGRNDILKLLVDAGCDINAYSTHDHDRMTCLHIAVWCNQPETLKILLHMKADPNLSGTWMDCSG-TPLDFARQYKNNDMIAIF 131
            PLH +A  G  +++KLL+  G D NA    D D  T LH+A      E +K+LL   ADPN S    D  G TPLD AR++ N +++ + 
Sbjct:   73 PLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS----DSDGRTPLDLAREHGNEEVVKLL 155
[Close]
BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Match: gi|408536130|pdb|4HB5|A (Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. >gi|408536131|pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267.)

HSP 1 Score: 62.003 bits (149), Expect = 2.795e-8
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:   43 PLHRSAAIGRNDILKLLVDAGCDINAYSTHDHDRMTCLHIAVWCNQPETLKILLHMKADPNLSGTWMDCSG-TPLDFARQYKNNDMIAIF 131
            PLH +A  G  +I+KLL+  G D NA    D D  T LH A      E +K+LL   ADPN S    D  G TPLD AR++ N +++ + 
Sbjct:   73 PLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS----DSDGRTPLDLAREHGNEEIVKLL 155
[Close]
BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Match: gi|1103700590|pdb|5EIL|A (Chain A, Computational Design Of A High-affinity Metalloprotein Homotrimer Containing A Metal Chelating Non-canonical Amino Acid >gi|1103700591|pdb|5EIL|B Chain B, Computational Design Of A High-affinity Metalloprotein Homotrimer Containing A Metal Chelating Non-canonical Amino Acid >gi|1103700592|pdb|5EIL|C Chain C, Computational Design Of A High-affinity Metalloprotein Homotrimer Containing A Metal Chelating Non-canonical Amino Acid)

HSP 1 Score: 61.2326 bits (147), Expect = 4.995e-8
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:   43 PLHRSAAIGRNDILKLLVDAGCDINAYSTHDHDRMTCLHIAVWCNQPETLKILLHMKADPNLSGTWMDCSG-TPLDFARQYKNNDMIAIF 131
            PLH +A  G  +I+KLL+  G D NA    D D  T LH A      E +K+LL   ADPN S    D  G TPLD AR++ N +++ + 
Sbjct:   73 PLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS----DSDGRTPLDLAREHGNEEIVKLL 155
[Close]
BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Match: gi|414145861|pdb|4HQD|A (Chain A, Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR265. >gi|414145862|pdb|4HQD|B Chain B, Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR265.)

HSP 1 Score: 60.077 bits (144), Expect = 1.451e-7
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:   43 PLHRSAAIGRNDILKLLVDAGCDINAYSTHDHDRMTCLHIAVWCNQPETLKILLHMKADPNLSGTWMDCSG-TPLDFARQYKNNDMIAIF 131
            PLH +A  G  +I+KLL+  G D+NA    D D  T LH A      E +K+L+   AD N S    D  G TPLD AR++ N +++ + 
Sbjct:   73 PLHYAAKEGHKEIVKLLISKGADVNAK---DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS----DSDGRTPLDLAREHGNEEIVKLL 155
[Close]
BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Match: gi|403072298|pdb|4GPM|A (Chain A, Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR264. >gi|403072299|pdb|4GPM|B Chain B, Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR264.)

HSP 1 Score: 60.077 bits (144), Expect = 1.572e-7
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:   43 PLHRSAAIGRNDILKLLVDAGCDINAYSTHDHDRMTCLHIAVWCNQPETLKILLHMKADPNLSGTWMDCSG-TPLDFARQYKNNDMIAIF 131
            PLH +A  G  +++KLL+  G D+NA    D D  T LH A      E +K+L+   AD N S    D  G TPLD AR++ N +++ + 
Sbjct:   73 PLHHAAENGHKEVVKLLISKGADVNAK---DSDGRTPLHHAAENGHKEVVKLLISKGADVNTS----DSDGRTPLDLAREHGNEEVVKLL 155
The following BLAST results are available for this feature:
BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of achain crystal structure of engineered northeast structural genomics consortium target vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 5
Match NameE-valueIdentityDescription
gi|402550781|pdb|4GMR|A6.948e-940.00Chain A, Crystal Structure Of Engineered Protein. ... [more]
gi|408536130|pdb|4HB5|A2.795e-841.11Chain A, Crystal Structure Of Engineered Protein. ... [more]
gi|1103700590|pdb|5EIL|A4.995e-841.11Chain A, Computational Design Of A High-affinity M... [more]
gi|414145861|pdb|4HQD|A1.451e-738.89Chain A, Crystal Structure of Engineered Protein. ... [more]
gi|403072298|pdb|4GPM|A1.572e-737.78Chain A, Crystal Structure of Engineered Protein. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold147_size311475supercontigscaffold147_size311475:229067..234601 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold147_size311475-snap-gene-2.16-mRNA-1maker-scaffold147_size311475-snap-gene-2.16-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold147_size311475:229067..234601+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold147_size311475-snap-gene-2.16 ID=maker-scaffold147_size311475-snap-gene-2.16|Name=achain crystal structure of engineered northeast structural genomics consortium target|organism=Tigriopus kingsejongensis|type=gene|length=5535bp|location=Sequence derived from alignment at scaffold147_size311475:229067..234601+ (Tigriopus kingsejongensis)
CAAAGATTAGAGATTTAAAGACGCATGAAAACACAGAAGACGATAAGGCC
CAACCTGGAAGATACTCTCACACTCGCATTCAAGTTGGTGAAACATTCTA
CTGATCTTTTTTCACCATGGGCTGGGAACAATCCCTCACCGCTGCCGTCT
ACAGTAATAACATTGGTAAGACCCTCAAAACTTGTCCCCCTCCAAAATCA
GCATCCCTACTTCGCATTCGTAGACAACCTCCTTTGACTGGGTTATTGAG
ACCACTCACGTCCAAGGGGGTCCCAGTAAAACGTCCCTGTTTAACCAAAG
TCCCAAAACTTCTTTTGTTGTTGGCCGTTTGTCAGCTGACTCGCACGTGA
CAGCCAATCATTAAGCAGAGAGGAGGGATATTTTAAGGGTGGTTTGCTAC
CGTGAGCCAATCAGCTCCATGAAATAACTGAGTGTCTGGACTTTTATGAT
TACTCTTAGGAGACTCGACTAGTCTAGTGAGCCTGTAAACAGAGAGGTGA
CAGGCCCCAAATTTCAATCACCAATCCAGAATATTAAAGCTTACTTCAGA
GTTTGAACCAAGGAGGTTGGAGTGAGCGTGCCTGGGAAAGTGGCTAAAAG
GGAGAAGCGACAACAAATCTGCTGATCTAAGTACAAAAAACGGTGCACCT
TTGCCTGGTCTTTTGATGGCCTCCACGGCGTGCCCGAGAAATTGGACAGG
CAAAGACGCACCGTTTTCGCGTTTAGATCAGCAGTCGTGTTGTCGATCCT
TTTTGCTGAGTGGCTTGCTCTAGTTATATTACCTCAATGGTTTGAACTCC
CTGTTTACTATGGGCTGCTTAGATCAGTCCAGTCACCTATGCCTGAGCAA
GCCACTCACTTCAAAAATGCCGTTTTTGGTACAAAATAGTCCAAAAAATT
GTCATCTGAGAAAAAATGGTGAAGCCCGCTTTTCGGCACTAAAGTGGTAC
CCTTGGATAGGTAAATTTGAGGCATCGTGGACGAAAATGTGGGCTTAACC
GTACTCTAACCAAAGTCCCGACACTCCCTTTTGCTGTGGGCCGTTGGTCG
GCAGACTCTCACGTGACAGCCAATCATTGAGAAAAGAGGGGGGATTTTGA
GAGGGTGCTATCCTGCTGTGAGCCAATCATGTCGAGACTGTTCATCAGCT
CCATGAAATAACTGGTATGAGTGGCTGGACTTTGGGTATGCAGGGACTTT
AAACCGTACGAGCCAGGGGCCCTGGGAGCGATCCAAGGACCTTTGGGAGG
CCCTCGACAACCAATATAGCCAAGATAGACATACAGCCAATATATAGACA
CATTTACAGGACAATACGTAGATTGTTGTTCTCGTGATGCCTGTTCAACA
TTTCCCAGCTCTTGCTATGTTATGTTAAGATGTATGAACGCTTTGGCTGG
AGGACGTACTACATGATAATATAAGTATGTTGTTAAGTTGAACTGACTGT
TTTCCCTTCATATTCTACTTCAAATGTGGAATTGATTGTCCATGCTTCTA
CTACTCATATCATGATGGGGTTTGTTTTGGGCAGAAGCCATTTTTGAATA
CTTTTGTCTCCTTGGATGGTGTGTACGTTACCATTGATGCTGTCAAGTGA
TTCGGATTGACAGATTTCAGTAATACGTTACTGTATATTAAAAAATGCAA
GTTCCCATTTGCTGCCACTTTTACGAGCATAAACCTCTCAGCTCATGCCT
ATTCTTCCGTAGCTCAACAAAAGCACTTTCCCATGTACTCCTCCAGGATT
TGAGACTCACCTAATGGAATTCGTGGAATTTATTCGTTTCCCTCGAGTGG
CTGAGCCCTTTTTTACGCCAGAATTGGGGAATCTCCTGTCTCATTCATTG
CAATAGAACTCTCATCCAGCTCAATCGTGGCTAATTCGGTATTCAAGAGA
GTTTGCCCTCAAGATCGTGTCGTTTGTCTGTTCCAGACAAAGTCAAACAC
TATATCAGGAAGGAGGAAATCCGGCAGACATTGGGTCGCCCCGAATGGAT
TTGGGATGAGGCTCCATTGCATCGCTCCGCAGCCATTGGCCGGAATGACA
TCCTCAAGCTCCTGGTGGATGCTGGTTGCGATATCAACGCCTACTCGACT
CACGACCATGACAGAATGACGTGTCTACATATAGCTGGTGAGGGTTTGGT
GCGTCTATCTAAGTTATATACGAAAGGAACTGACTATTTTTGGCTCAAAT
AACTTTTTAAAGTGACGACAATGGGATCAAAACGTGATGGACAAAGTACT
TTCTTAAGGTCTTTAGCAACGCCTTGGAGCCAATTTTTTGACCAGTGTTG
CCAAGTCAGGTCCTCAATTACCCTTGTAACTCATACAATTGAATAAAACC
CATTATAGGAGCTTTTGGATGGCTTTCGAAATTGCAATCTCGACCGTTTG
ATTTTTTTTTTAAATCTGAAGAAAAGCATTTCAAAAATGTGTTTACCCAG
AGTTGTCCATTTACGTTTTTTACACATCTAACACGATTAACATGCGTGCT
TGCAATTCATATGCTTAGTATGGTGCAACCAGCCCGAGACATTGAAGATT
CTACTACACATGAAAGCCGATCCCAATTTGAGCGGAACCTGGATGGATTG
CTCTGGAACGCCCTTGGATTTTGCCCGCCAGTATAAGAATAATGACATGA
TTGCAATCTTCAGGGACATTGACAATGATGGCAAGATCAACCAGTCTTCC
ACAATCAACCGGATGAAAGGTACAGGAGTCAGTTCAAGGCATTCGTTTGG
GCCTTTTTTCACTAAAACTGCAGAGTTGCTTGGAAGGGAAGCCTTTTAAA
GCGCAATACAACTACCTGGATGTCCTGAAACAAAATGTCACACTTCCCAC
CCTGAGTGTAAACACTCTTCTCTATTCACACTTCAACACGAATCCACTTG
TTGAGCCAAGGAGTGTCAAGGAGAGTGGAATACGCATCCTAGAAAAACTC
CATTGTGGAAAAGGGACTTGAAACTGACAAAGTGCATGATCTGTCCAAGG
CTGGGTGACACTCTGTGTGTGTGTTTGGAAGGCCCCGGGCATTTCTGCCC
AATCTCCAAGGAGTCAGAGTCAGCCTGGCAGTCAAATTTATCATTAGATT
ATTACCCTACCCTCGAGGCATGACCACAAGTACGCCCACTTTAATCCCGC
AAGGGAAGCAAACAATAGCTGTGAGTGAACACCACTAGATGCCGGAACTT
GGCCAGCCCGAGATCGAACCAACGACCCTTGGATAACACAATGATAGGTT
GTTATTATCATCAGCTATGAGCTTCTGAAATGACCTGGAAAAGTTGTTTG
CTCAACACAGGCAATCTAGTGAAATTGAAAAATATGCTATGTTGTAGAAG
GTTTTCTGTGATTTTTTTCTCAGTTGGTGCTGAAACGGTGCTGAAACAAC
TTTTCTTTATCTCTTGAAATTGATTTTAATGCACCCAAGCTTTATTTTTT
GCCTAGTCTAAAACATTGTTACGGTAGAAGTCAAACTGGCGGTAATACAA
TAGTTTTGACCCAGCTATGACCGTCCTGCCTCGATGAGGGGTGAATAACT
CTCAGCAATGTGAAACTAAATCCAAAATTATTCATTTTAATTTACCCATG
TCATTTTGTTTCAACCTGCCCTTTTGTCAACATATACCAGAAAACAAAGT
TATGGCATTAAGTCAAACTTGTACGATTTGATATTTTCGAGGTAACTTTT
CACTTTTGGTCCTGAAATACAGGTGCGGCCACATCTTGAGGAAGGGTCCC
TTCTGGTTTCCCACAAATTAAAATAGTGGTTGGAACTGGATTGTACGGGG
CTGCACGGCGACTAGGTAGCATCAGCTAATAACATCAGTGGGCCCTGTGT
ACACCATGGATGCTCCATGGTGCAAACACCAAACCACCGGAAGGGCGATA
ACACAACACACCCCAAAAAGATGCTGTGGCCACATCAGCATAAAAACGGC
TTTTATTTGCATTTACAGCAGTTATCTTTGTTTTCCGTTACTACTTAAAA
TATGTATATTCTTATCTATGGCCCTAGCACTATTGATTAGCATTTGTTTG
CTAAGTGTTGACTCCTGTATTCCTACATTTTAATATGTAGGAATACACGA
TTACTCACACATTGATACTATACAAACAATTCGCAGCCAATTTAAATTGT
GGACCAAGCAAAACTGGTTCTTTCCTAATGGGGCTTTGTTTTACCCCATT
GTCAGCGCCAAGGGGTGGGCAAGTATACAGTAAAAGAGAATTAATTACCC
AACTTTGTTCCTTGGAGAGTGCAGAGAAAACGATTTTGACTTTGGAATCG
ATCAATAATCGAATCCCTCCGTGTGCTATTCTGGAGAAAATGTCGGTACA
AAGATATCAAAATAATTTTTTTCATGGCATATAGGAATCGATATTATATT
GAAGTCAACATTGAGGCTTCATTCTGCTCTAGCAGTATCTGCAAAACACC
TTGCAATCTGCGACTCTAACATGCATAATAGGGAATTTATAATTGATATA
TATGCACTCCCCTGTAATCTGCACACTTCCGCTTATAGATTACTCAAACC
ATTGCAGCCAACATTTTGCCAAACAACTTGTATGTATGTAAACAAAGTTC
AAGTATTTTAGTCACGCAATCTTGGACCAATGAGGATATATGGAGCACTG
GTCTGCTTATGTTCTGTATGCAGTATAATTTGTTACTTGTACGATACACG
ATAAAAAATGGTTTTCCAACAAAATAATGAGCCAAATATTTAAAAATAAG
ATTGAGTTGGCCAGACCACAGAACCCTGTAAACATGGAAGAATTAGACGC
TGACCAGACTTAGGGCCATCGTCAGAAGTGACCAGAGTTTCAAATCGGAA
AAATACCGATGCATGCAGCTCAAGGTTGGTTGCAAAAGTAGATAACCACG
CCAAATGCAGCTTAAACAGGCTGAACATGGCCAGCCTTCCCAGAGTGCCC
CGAGTCACTACAATTTGATCTGGCATTTTCGTTATTGGAAACTACGACCA
GCTCATTTCCAATCTGGAAAATTTGGTCGCTTTTGAGTTTGGCCCCAAGT
CTGGCGATGTAGAATCGTGAGTAATACTTCCAGATGTACAGGGTTCCATG
GCCAGACGTATCGTTTTCCGTGTGTCTATCCTGAAATGCATTTTAACCAG
GTTCATTCTATTTTAAGACTACAAAGCTCTTTCCAGGTCACGGAGCTAGT
GGAACCCGCTTGCAAACCTCTACCATCCTTAGTGGTCTGGAGAACATGGT
CGGCAAGGAAAAGGCCGTCTACAAGGGCGTCGAGCTGCTCAAAAAATCCA
ATCGAGCCGATAAGAACATTCAAGAACTCAAGCGAAAACTCATCCAAGCT
GAGAAGGAGCTCTTCGACATCCATGAGAATCCAGACTTCATGACTCAGGA
AGAGATCGACGATCTCGCCGTGGAGATTGATGAGTTGAAGATCTTTGCGT
CTGAAGTCCGTAAAGTTCTCTAAGGGCTATAGCCCCATACTGAGGCCAAA
AAGTACTTGATTAGCCGTGTACAAATGCAAATGAA
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Synonyms
The feature 'achain crystal structure of engineered northeast structural genomics consortium target' has the following synonyms
Synonym
Tk08609
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