26s proteasome complex subunit dss1-like, maker-scaffold1518_size37722-snap-gene-0.18 (gene) Tigriopus kingsejongensis

Overview
Name26s proteasome complex subunit dss1-like
Unique Namemaker-scaffold1518_size37722-snap-gene-0.18
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 26s proteasome complex subunit dss1-like vs. L. salmonis genes
Match: EMLSAG00000005643 (supercontig:LSalAtl2s:LSalAtl2s303:371782:375196:1 gene:EMLSAG00000005643 transcript:EMLSAT00000005643 description:"augustus_masked-LSalAtl2s303-processed-gene-3.5")

HSP 1 Score: 84.3445 bits (207), Expect = 5.607e-23
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0
Query:   25 DLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQL 73
            DLGLLE+DD+FEEFP E+W+   EDK D+NVWEDNWDDDTVEDDFS+QL
Sbjct:   13 DLGLLEDDDEFEEFPHENWDESQEDKGDINVWEDNWDDDTVEDDFSVQL 61          
BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Match: gi|46397408|sp|P60896.1|SEM1_HUMAN (RecName: Full=26S proteasome complex subunit SEM1; AltName: Full=26S proteasome complex subunit DSS1; AltName: Full=Deleted in split hand/split foot protein 1; AltName: Full=Split hand/foot deleted protein 1; AltName: Full=Split hand/foot malformation type 1 protein >gi|46397409|sp|P60897.1|SEM1_MOUSE RecName: Full=26S proteasome complex subunit SEM1; AltName: Full=26S proteasome complex subunit DSS1; AltName: Full=Deleted in split hand/split foot protein 1 homolog; AltName: Full=Split hand/foot deleted protein 1 homolog; AltName: Full=Split hand/foot malformation type 1 protein homolog >gi|115502151|sp|Q3ZBR6.1|SEM1_BOVIN RecName: Full=26S proteasome complex subunit SEM1; AltName: Full=26S proteasome complex subunit DSS1; AltName: Full=Split hand/foot malformation type 1 protein homolog)

HSP 1 Score: 64.6994 bits (156), Expect = 1.618e-14
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 0
Query:   21 KETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K+  DLGLLEEDD+FEEFPAEDW   DED+ D +VWEDNWDDD VEDDFS QLRAEL   G  ME+
Sbjct:    5 KQPVDLGLLEEDDEFEEFPAEDWAGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMET 69          
BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Match: gi|50401703|sp|Q9VM46.1|SEM1_DROME (RecName: Full=Probable 26S proteasome complex subunit sem1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.597e-9
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   22 ETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAEL 77
            ++ DLGLLEEDD+FEEFPAED+   D D+ ++NVWEDNWDDD VEDDFS QL+A L
Sbjct:   18 KSEDLGLLEEDDEFEEFPAEDFRVGD-DEEELNVWEDNWDDDNVEDDFSQQLKAHL 72          
BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Match: gi|50401649|sp|Q95Y72.2|DSS1_CAEEL (RecName: Full=Probable 26S proteasome complex subunit dss-1; AltName: Full=Deleted in split hand/split foot protein 1 homolog)

HSP 1 Score: 49.6766 bits (117), Expect = 2.134e-8
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    2 STASQKEGKASAAPADKAVKETPDLGLLEEDDDFEEFPAEDW-EAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQG 81
            STA++K+ K+SA P    V++        E+++FEEFP ++W E  + ++ DVNVWEDNWDD+T E +FS QL+ EL   G
Sbjct:    3 STAAKKDVKSSAVPVTAVVEKK-----EFEEEEFEEFPVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRKSG 78          
BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Match: gi|50401355|sp|O94742.1|SEM1_YEAST (RecName: Full=26S proteasome complex subunit SEM1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.339e-8
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   29 LEEDDDFEEFPAEDWEAPDEDKAD----VNVWEDNWDDDTVEDDFSIQLRAEL 77
            LEEDD+FE+FP + W   +  K++     N+WE+NWDD  V+DDF+ +L+AEL
Sbjct:   29 LEEDDEFEDFPIDTWANGETIKSNAVTQTNIWEENWDDVEVDDDFTNELKAEL 81          
BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Match: gi|50401503|sp|Q7SA04.1|SEM1_NEUCR (RecName: Full=Putative 26S proteasome complex subunit sem-1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.012e-7
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    2 STASQKEGKASAAPADKAVKETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVN-----VWEDNWDDDTVEDDFSIQLRAEL 77
            ST  + + K++    ++ V E     +LEEDD+FE+FP +DWEA D + A  N     +WE++WDDD   DDFS QL+ EL
Sbjct:    3 STQPKNDAKSTEPKPEQPVTEK-KTAVLEEDDEFEDFPVDDWEAEDTEAAKGNNEAKHLWEESWDDDDTSDDFSAQLKEEL 82          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|562858186|ref|XP_006157569.1| (PREDICTED: 26S proteasome complex subunit DSS1 [Tupaia chinensis])

HSP 1 Score: 86.6557 bits (213), Expect = 1.167e-20
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   21 KETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K+  DLGLLEEDD FEEFPAEDW   DED+ D +VWEDNWDDD VEDDFS QLRAEL   G  ME+
Sbjct:    5 KQPVDLGLLEEDDAFEEFPAEDWTGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMET 69          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|555968386|ref|XP_005896228.1| (PREDICTED: 26S proteasome complex subunit DSS1 [Bos mutus] >gi|440905733|gb|ELR56078.1| 26S proteasome complex subunit DSS1 [Bos mutus])

HSP 1 Score: 83.1889 bits (204), Expect = 2.800e-19
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   21 KETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K+  DL LLE+DD+FEEFPAEDW   DED+ D +VWEDNWDDD VEDDFS QLRAEL   G  ME+
Sbjct:    5 KQPVDLCLLEDDDEFEEFPAEDWAGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMET 69          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|1032914166|ref|XP_007648433.2| (PREDICTED: LOW QUALITY PROTEIN: 26S proteasome complex subunit DSS1 [Cricetulus griseus] >gi|1032944719|ref|XP_007621514.2| PREDICTED: LOW QUALITY PROTEIN: 26S proteasome complex subunit DSS1 [Cricetulus griseus])

HSP 1 Score: 82.4185 bits (202), Expect = 4.790e-19
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0
Query:   20 VKETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            +K+  DLGLLEE D+F+EFP EDW   DED+ D  VWEDNWDDD+VEDDFS QLRAEL   G  ME+
Sbjct:    4 MKQPVDLGLLEEGDEFKEFPXEDWAGLDEDE-DARVWEDNWDDDSVEDDFSNQLRAELEKHGYKMET 69          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|942030317|ref|XP_014332563.1| (PREDICTED: 26S proteasome complex subunit DSS1 [Bos mutus])

HSP 1 Score: 80.1073 bits (196), Expect = 4.245e-18
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 0
Query:   21 KETPDLGLLEEDDDFEEFPAEDWE---APDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K+  DLGLLE+DD+FEEFPAEDW      DED+ D +VWEDNWDDD VEDDFS QLRAEL   G  ME+
Sbjct:    5 KQPVDLGLLEDDDEFEEFPAEDWADWAGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMET 72          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|1242739419|ref|XP_022326036.1| (26S proteasome complex subunit SEM1-like [Crassostrea virginica])

HSP 1 Score: 78.1814 bits (191), Expect = 2.898e-17
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0
Query:   18 KAVKETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K  ++ PDLGLLEEDD+FEEFPAEDW   DED+ DVNVWEDNWDDD VEDDFS+QLRAEL  QG +ME 
Sbjct:    5 KEKEKKPDLGLLEEDDEFEEFPAEDWTGADEDEEDVNVWEDNWDDDNVEDDFSLQLRAELEKQGKSMEG 73          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|762163374|ref|XP_011419976.1| (PREDICTED: 26S proteasome complex subunit DSS1-like [Crassostrea gigas])

HSP 1 Score: 76.2554 bits (186), Expect = 1.687e-16
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0
Query:   18 KAVKETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K  ++ PDLGLLEEDD+FEEFPAEDW   DED+ DVNVWEDNWDDD VEDDFS+QLRAEL  QG  +E 
Sbjct:    5 KEKEKKPDLGLLEEDDEFEEFPAEDWTGADEDEEDVNVWEDNWDDDNVEDDFSLQLRAELEKQGKTIEG 73          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|562858202|ref|XP_006157577.1| (PREDICTED: 26S proteasome complex subunit DSS1-like [Tupaia chinensis])

HSP 1 Score: 74.3294 bits (181), Expect = 1.742e-15
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   33 DDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            D+FEEFPAEDW   DED+ D +VWEDNWDDD VEDDFS QLRAEL   G  ME+
Sbjct:   45 DEFEEFPAEDWAGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMET 97          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|961097375|ref|XP_014774215.1| (PREDICTED: 26S proteasome complex subunit DSS1-like [Octopus bimaculoides] >gi|918316798|gb|KOF86044.1| hypothetical protein OCBIM_22019323mg [Octopus bimaculoides])

HSP 1 Score: 73.559 bits (179), Expect = 1.809e-15
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query:   24 PDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNME 85
            PDLG+LEEDD+FEEFPAEDW   +E+K D+NVWEDNWDDD +EDDFS QLRA+L  QG ++E
Sbjct:    8 PDLGILEEDDEFEEFPAEDWNGAEEEKNDINVWEDNWDDDNIEDDFSKQLRAQLELQGKSLE 69          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|646722118|gb|KDR23221.1| (26S proteasome complex subunit DSS1 [Zootermopsis nevadensis])

HSP 1 Score: 73.559 bits (179), Expect = 1.860e-15
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   16 ADKAVKETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
             D A K   DLGLLEEDD+FEEFPAEDW   DED+ D++VWEDNWDDD VEDDFS+QLRAEL  QGV ++S
Sbjct:    2 TDSANKPKVDLGLLEEDDEFEEFPAEDWAGKDEDEEDISVWEDNWDDDNVEDDFSMQLRAELEKQGVKVDS 72          
BLAST of 26s proteasome complex subunit dss1-like vs. nr
Match: gi|1330887478|gb|PNF20791.1| (26S proteasome complex subunit SEM1 [Cryptotermes secundus])

HSP 1 Score: 73.1738 bits (178), Expect = 2.444e-15
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 0
Query:   21 KETPDLGLLEEDDDFEEFPAEDWEAPDEDKADVNVWEDNWDDDTVEDDFSIQLRAELVNQGVNMES 86
            K   DLGLLEEDD+FEEFPAEDW   DED+ D++VWEDNWDDD VEDDFS+QLRAEL  QGV ++S
Sbjct:    4 KPKVDLGLLEEDDEFEEFPAEDWTGKDEDEGDISVWEDNWDDDNVEDDFSMQLRAELEKQGVKLDS 69          
The following BLAST results are available for this feature:
BLAST of 26s proteasome complex subunit dss1-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000056435.607e-2377.55supercontig:LSalAtl2s:LSalAtl2s303:371782:375196:1... [more]
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BLAST of 26s proteasome complex subunit dss1-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
gi|46397408|sp|P60896.1|SEM1_HUMAN1.618e-1471.21RecName: Full=26S proteasome complex subunit SEM1;... [more]
gi|50401703|sp|Q9VM46.1|SEM1_DROME5.597e-969.64RecName: Full=Probable 26S proteasome complex subu... [more]
gi|50401649|sp|Q95Y72.2|DSS1_CAEEL2.134e-845.68RecName: Full=Probable 26S proteasome complex subu... [more]
gi|50401355|sp|O94742.1|SEM1_YEAST2.339e-849.06RecName: Full=26S proteasome complex subunit SEM1[more]
gi|50401503|sp|Q7SA04.1|SEM1_NEUCR2.012e-743.21RecName: Full=Putative 26S proteasome complex subu... [more]
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BLAST of 26s proteasome complex subunit dss1-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|562858186|ref|XP_006157569.1|1.167e-2071.21PREDICTED: 26S proteasome complex subunit DSS1 [Tu... [more]
gi|555968386|ref|XP_005896228.1|2.800e-1968.18PREDICTED: 26S proteasome complex subunit DSS1 [Bo... [more]
gi|1032914166|ref|XP_007648433.2|4.790e-1965.67PREDICTED: LOW QUALITY PROTEIN: 26S proteasome com... [more]
gi|942030317|ref|XP_014332563.1|4.245e-1866.67PREDICTED: 26S proteasome complex subunit DSS1 [Bo... [more]
gi|1242739419|ref|XP_022326036.1|2.898e-1773.9126S proteasome complex subunit SEM1-like [Crassost... [more]
gi|762163374|ref|XP_011419976.1|1.687e-1672.46PREDICTED: 26S proteasome complex subunit DSS1-lik... [more]
gi|562858202|ref|XP_006157577.1|1.742e-1570.37PREDICTED: 26S proteasome complex subunit DSS1-lik... [more]
gi|961097375|ref|XP_014774215.1|1.809e-1570.97PREDICTED: 26S proteasome complex subunit DSS1-lik... [more]
gi|646722118|gb|KDR23221.1|1.860e-1570.4226S proteasome complex subunit DSS1 [Zootermopsis ... [more]
gi|1330887478|gb|PNF20791.1|2.444e-1572.7326S proteasome complex subunit SEM1 [Cryptotermes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1518_size37722supercontigscaffold1518_size37722:27434..28882 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1518_size37722-snap-gene-0.18-mRNA-1maker-scaffold1518_size37722-snap-gene-0.18-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1518_size37722:27434..28882-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1518_size37722-snap-gene-0.18 ID=maker-scaffold1518_size37722-snap-gene-0.18|Name=26s proteasome complex subunit dss1-like|organism=Tigriopus kingsejongensis|type=gene|length=1449bp|location=Sequence derived from alignment at scaffold1518_size37722:27434..28882- (Tigriopus kingsejongensis)
GAAAAACCTCATCAAGCTCACTCGAACTCAGCGCGTTTTCGATCCGGAAC CATGTCGACCGCCAGCCAGAAGGAGGGCAAGGCCAGCGCTGCCCCCGCCG ACAAGGCGGTCAAGGAAACACCCGACTTGGGCCTACTCGAAGAAGATGAC GATTTCGAGGAGTTTCCGGCCGAAGGTAAAACCCGAGGGCAACGTTGGAG ACGCGCGAGGGCTCAAGTTGATCAAGTTGGCTTGGCTTTGCAGATTGGGA GGCTCCGGACGAGGACAAGGCGGACGTGAACGTGTGGGAGGACAACTGGG ACGACGACACGGTCGAGGACGACTTCTCCATCCAGCTCAGGTGAGTGTGG GCTGGTCCCGAGGGGGGGGGGGGGTGACCCGCCCATTTGAACCCGGCCCC CATTGAATGATTGCGTGTGTGTGTCCAGCCGCTACAGCCGCAAGCGGGCC CACAGCCGCCTGGGTCGGAGTCCGCCGTTGCGCTCGCCCGAGCCGCAGGC CAAGAAGGCGTGCACGCGAGCCGACTGGCCCATGGAGGAGGATGAAGCAC CCGCCGCCACCACCGCCACGCCCACCACCGCCACACCTCCCAGCACGCGT CGGAGCACGCCCTCCACGCCCACTGCGTCCGCCAATGGCCGCTCGTCATC GCGGGGCCGATCCACCCGCACCTCGCGAAGCAGCCGTACCTCGCCGCAAG CGGCCGCCGAGCCCACCACGCCCGCGGCCGCAGACAGTCCAGCCCGCTCG ACCCGCTCCAGCGCGAGGCTGAGGTCGTCGAGAAAGTGAAGGAGGCTAGA AATCGGCGGCCACGGTGGGGGCGGGGGCCCACTCGGACCACACCTCCCAA GCCAGCCAGGTCAGCAACCGATTTCTCGTTCACTTTGGGGGCCGACGACC TCGGGCCTCGCCGGGTGGGCATGAGGAGTGGGCCTGAGGGGTGGGCCTGA GGGGTGGGCCTGAGGGGTGGGGGGGCGCGAGTGTCATTGACGCCAGCCGA TGTATTACTCAGCCTGGGACCCGCCGTGAGTCTTCCTGGTTGAAGTACTG CTGATCCTCATGGGCGCCACACTGTTTAATCTAGGACTAGCCATTGGGAC TTGAGCCCTGCGGTATTCAGCTCGAGCTGACCCGGGATTGAGTGGGGTTA TGGCCACTCCCATGGGGTGTCCTAAGTGACGGGTCGCCGCTTACAGCGGG TGCGAGGCATGATTTTCAGGCCGATTATATCGAACTCCTCCAGTTGTCGC AAATTTAAATGGGATCGACCGTCATGCCACTTGTTGTGCTCACCAGTGTC TGTAATCCATGTGGTTCTATTTCAGAGCCGAGTTGGTCAACCAAGGCGTC AACATGGAGTCGTAAATATTGGTCAGCTGGGCGATGTGGTCGCCGCCGCT TCTGCCCGCAGCCGTCAAGGCGTTTCGCCGGCTCGTGGTGCAGTCGGGC
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Synonyms
The feature '26s proteasome complex subunit dss1-like' has the following synonyms
Synonym
Tk01681
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