gaba-alpha subunit, maker-scaffold155_size301336-snap-gene-2.8 (gene) Tigriopus kingsejongensis

Overview


Name	gaba-alpha subunit
Unique Name	maker-scaffold155_size301336-snap-gene-2.8
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000009520 (supercontig:LSalAtl2s:LSalAtl2s612:286575:292619:1 gene:EMLSAG00000009520 transcript:EMLSAT00000009520 description:"maker-LSalAtl2s612-augustus-gene-3.13")

HSP 1 Score: 154.451 bits (389), Expect = 6.887e-44
Identity = 82/197 (41.62%), Postives = 115/197 (58.38%), Query Frame = 0

Query:  159 MDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEARN-----------------------YSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNR 332
            MDL+ +P+DRQ+C + I S+G+T  D+ Y+W      VQ   D++LP+FK+         ++                        YS L   + F R   YYL+ IY+PS ++VIISWVSFWL+  + PARV+LGVTT+LTM+T  A  N +LP ++Y K+IDV+ GAC   VF++LLE+A V Y A R   RK R
Sbjct:    1 MDLKLYPLDRQVCEMRIASYGWTTDDLIYRWKSK-DPVQFVQDLNLPRFKLESFSTSYCNSKTNTGSVILYTEFPIVKLVFFNSGEYSCLKINLVFKREFSYYLLTIYVPSCMLVIISWVSFWLDSKSVPARVALGVTTLLTMSTQTAGVNRSLPPVAYTKAIDVWSGACVIFVFSALLEFAFVNY-ASRHDRRKGR 195

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000010666 (supercontig:LSalAtl2s:LSalAtl2s706:296770:341480:-1 gene:EMLSAG00000010666 transcript:EMLSAT00000010666 description:"maker-LSalAtl2s706-snap-gene-3.11")

HSP 1 Score: 154.066 bits (388), Expect = 9.473e-44
Identity = 72/83 (86.75%), Postives = 72/83 (86.75%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASC 157
            DFTLDMYFRQFWQDPRLSF  RPGL KLVVGAEYI LIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSI      S 
Sbjct:  126 DFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSISFVPNGST 208

HSP 2 Score: 133.265 bits (334), Expect = 3.505e-36
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRY 74
            LDMYFRQFW+DPRLSF    GLEKLVVGAEYI+LIWVPDTFFVNEK AYFH ATT+NQFLRILHTG ILRSI +
Sbjct:  129 LDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSISF 202

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000010665 (supercontig:LSalAtl2s:LSalAtl2s706:273592:296720:-1 gene:EMLSAG00000010665 transcript:EMLSAT00000010665 description:"maker-LSalAtl2s706-snap-gene-3.10")

HSP 1 Score: 152.525 bits (384), Expect = 1.902e-43
Identity = 86/110 (78.18%), Postives = 89/110 (80.91%), Query Frame = 0

Query:  278 MTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSS 387
            MTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKN AMN     L DG   DH G+PKQT +   +HD      GSS
Sbjct:    1 MTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNXAMNASNAALNDG---DH-GMPKQTTVHFKVHDPKMHCKGSS 106

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000000070 (supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-1 gene:EMLSAG00000000070 transcript:EMLSAT00000000070 description:"maker-LSalAtl2s100-snap-gene-5.24")

HSP 1 Score: 139.813 bits (351), Expect = 6.792e-38
Identity = 74/216 (34.26%), Postives = 119/216 (55.09%), Query Frame = 0

Query:   76 FTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKW-NDGLTSVQISGDVSLPQFKVL----GHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTN 286
            +  D++F Q W+D RL           ++  E+++LIW PD+FF N K   F   T  N +L +     IL  ++LT+  SCPM+ + +P D Q C + +E   +T  D+ + W  +  T + +   + LPQ +++    G         N++ L    +F R +GYYL   YIP+ LIV++SW+SFW+   A  ARV+LGVT++LT++T  A+ N
Sbjct:   16 YAADVFFAQEWKDHRLILPDNMTREYRLLPVEWLHLIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMNFENYPHDEQNCKLSME-MSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELVSNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWISFWIKPEAXXARVTLGVTSLLTLSTQHANIN 230

HSP 2 Score: 53.9138 bits (128), Expect = 2.924e-8
Identity = 36/120 (30.00%), Postives = 55/120 (45.83%), Query Frame = 0

Query:    2 DMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTLD--MYFRQF---WQDPRLSFESRPGLRKLVVGAEYINLIWVPD 116
            D++F Q W+D RL     +  E  ++  E++ LIW PD+FF N KK  F   T  N +L +     IL  ++    L   M F  +    Q+ +LS E       L+        IW+P+
Sbjct:   19 DVFFAQEWKDHRLILPDNMTREYRLLPVEWLHLIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMNFENYPHDEQNCKLSMEMSHTTDDLI-------FIWLPE 131

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000001321 (supercontig:LSalAtl2s:LSalAtl2s1223:193582:196888:1 gene:EMLSAG00000001321 transcript:EMLSAT00000001321 description:"snap_masked-LSalAtl2s1223-processed-gene-2.46")

HSP 1 Score: 132.88 bits (333), Expect = 1.106e-34
Identity = 79/251 (31.47%), Postives = 130/251 (51.79%), Query Frame = 0

Query:   78 LDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHR---QKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKR 325
            L++     W D RL+       R L +    I+  W PD++F + K +   K  T    LR+     I  +  + +T  CPM    +PMD Q+C +E++SFGY M+ I Y W   +   Q+  D+ +    V       + + E   +S L   I+  R +G+++ Q YIPS + V I+W+SF +     P R+ L VTT+LT+ ++  S  +  P++SY+K++D+++  C   VF+SL EY  V Y+  R
Sbjct:    2 LELKISHMWADLRLNTSEMK--RPLELEPTSISDFWTPDSYFHHVKASNEVKIMTPVASLRVRPDKIIQYTKIILVTLGCPMSFYNYPMDNQICRLELQSFGYDMNLINYTW---MRPPQMKKDIIIDNHDVEIADYTFEYSPEGIRFSGLGIRIELKRHLGFHITQSYIPSIIFVAIAWMSFHVPSDVVPGRMVLSVTTLLTLISMFNSVRSLTPQVSYMKALDLWVFVCLVFVFSSLAEYGFVLYLTSR 247

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000004920 (supercontig:LSalAtl2s:LSalAtl2s259:1063168:1099810:-1 gene:EMLSAG00000004920 transcript:EMLSAT00000004920 description:"maker-LSalAtl2s259-augustus-gene-11.12")

HSP 1 Score: 129.413 bits (324), Expect = 9.153e-34
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 0

Query:  112 IWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWN-----DGLTSVQISGDVSLPQFKVLGHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGV 272
            +W+PDTFF NEK   FH     N ++R+   G+IL SIR+++T SCPM L+ FP+D Q C++ + S+G+T+ D+ Y W        + ++ + G   L  F       KT     YS L   + F R + YY+I IYIP+ +IV++SW+SFWL+  ++     L V
Sbjct:    7 VWMPDTFFRNEKEGKFHNIIQPNLYIRVFPNGDILYSIRISLTLSCPMSLELFPLDTQTCFLRVASYGWTVDDVVYNWKVPEPVQFVKNLFLPGGFGLHXFSDAYCNVKTATGE-YSCLTVIMTFRRQLSYYIITIYIPTLMIVMVSWMSFWLDHKSSTKHFCLRV 171

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000011250 (supercontig:LSalAtl2s:LSalAtl2s76:68800:74845:-1 gene:EMLSAG00000011250 transcript:EMLSAT00000011250 description:"maker-LSalAtl2s76-augustus-gene-0.8")

HSP 1 Score: 127.102 bits (318), Expect = 8.659e-33
Identity = 81/272 (29.78%), Postives = 130/272 (47.79%), Query Frame = 0

Query:   77 TLDMYFRQFWQDPRLSF------ESRPGLRKLVVGAEYINLIWVPDTFFVNEKTA----YFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEARNYSR--------------LACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAK 324
            TL+   R +W+DPR++       ESR  +      AEY    W+PD F    K      YF K  +    LR+ +   +  S RL    +C MD   FP+D QLC I+ ESFG+T   + + W  G  S  I+ ++SL QF +     K++    ++               L  +I   R +GY+++Q YIPS + V ++W+S +++  + PA              +  +    +PK+SYV  +D+++ AC F VF+ +LE+  V Y  K
Sbjct:   76 TLETSLRLYWEDPRIAVLPSALSESRNYVTFNPKVAEYF---WIPDIFIDKSKAVRVPTYFVKPAS----LRVYNDSTVRYSSRLNFDVACEMDFHRFPVDEQLCEIKFESFGFTTEQLMFSWKKG--SSNINQNISLAQFDM----NKSLNCLYFTHIYNTSHPFMSIFVGLIMKIHLRREIGYHIVQTYIPSMIFVFVAWLSLFISPESIPA--------------MFGAVRNNVPKVSYVSYLDIWMVACIFFVFSCILEFTIVSYSIK 320

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000003185 (supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7")

HSP 1 Score: 126.331 bits (316), Expect = 2.357e-31
Identity = 80/298 (26.85%), Postives = 140/298 (46.98%), Query Frame = 0

Query:   66 GAILR--SIRYDFTLDMYFRQFWQDPRLSFESR-------PGLRKLV-VGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLT-------SVQISGDVSLPQFKVLGHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNE 346
            G +LR     Y  T   YF   W++PRL +  +            L+ V  E +N +W+P+ F  N KT    +  +++  L I    +IL S    IT  CPM    FP+D Q C  ++ S+ Y  + +R+  +  +T       ++ +  D+ +   K+      +    NYS    E+   R + +Y+I  Y+PS L V++SW+SF +     P R++L +T  L +  +  S     PK   + +I+ ++ AC   VF +L+EYA     +  +   + R +  +KM ++ K+E
Sbjct:   65 GEVLRINDKEYSVTFSSYFNVLWKEPRLQYSDKFTKEVNNSSPETLIPVNLELVNELWLPNIFIYNLKTFKVVEVLSKHAGLWITSEKDILYSQATHITFICPMRFDAFPLDTQRCKFQVGSYSYDDTKMRFAGSPRVTGYAEXSRAIVLDYDIQIKSLKMKDMIYHSGTLGNYSLAGFEMVLHRYVSHYIITYYLPSGLFVVVSWISFVVPPTVIPGRMALLITLFLVLVNIFNSVTTNTPKAEGLTAIEAWMLACILFVFGALVEYAEEEDESMGMVEPRKRNIVTKKMRDEIKHE 362

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000008455 (supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11")

HSP 1 Score: 113.235 bits (282), Expect = 7.905e-28
Identity = 78/270 (28.89%), Postives = 130/270 (48.15%), Query Frame = 0

Query:   73 RYDFTLDMYFRQFWQDPRLSFESRPGLRKLV-VGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLP---QFKVLGHRQKTI---EARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGY---MAKRIQMRKNR 332
            ++  TL+MYF   W + RL+ +  PG    + +  +++N +WVP+ F  N  + +      +   L +    ++  +    +T  CPM    FP+D+  C   + S  Y M+ + + +N  L+   +SG+  L    Q K L    + I   E  NYS    E+   R+M  YL   Y+PS L V +SWVSF +     P R++L VT  L +  +  +     P +  + +I  ++ AC F VF +LL YA++ Y   M K+  + K R
Sbjct:   15 KFSVTLNMYFGVRWTENRLT-KMTPGTSSWIPIDMDFMNYLWVPNVFVYNLVSFHALDCLKKLAGLWVAEGKDLFYNQATHVTFMCPMRFNKFPLDQHSCKFLVGSTNYDMTRMLFDYNT-LSYDPLSGNTILDYRIQIKPLKTADRIINYGETGNYSLTGFEMTLTRNMAKYLYIYYLPSGLFVGVSWVSFLIPPDVVPGRMALLVTLFLVLINIFNTITNVSPNVEGMXAISSWMIACMFFVFGALLGYAAILYVLLMKKKNCLIKKR 282

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BLAST of gaba-alpha subunit vs. L. salmonis genes
Match: EMLSAG00000011211 (supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1 gene:EMLSAG00000011211 transcript:EMLSAT00000011211 description:"maker-LSalAtl2s765-snap-gene-1.16")

HSP 1 Score: 110.538 bits (275), Expect = 6.431e-27
Identity = 88/327 (26.91%), Postives = 140/327 (42.81%), Query Frame = 0

Query:   81 YFRQFWQDPRLSF--------ESRPGLRKLV-VGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWN----------DGLTSVQISGDVSLPQ-----------FKVLGHRQKTIEARNYSRLAC--EIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAK-RIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGP-PDHNGIPKQTEIR 373
            YF   W DPRL          E+R G +  V +    +  IW P+      +     +   E   +RI     I   + + IT SC M    +P+D   C  ++ S  Y   DI   W           D   +VQ S      Q           F+ L  + +++   + +  AC  +IQ VR    YL+Q+Y+PS + V+ SWVSF +     P R++L VT  L +  +  S     P  S + +ID+YL  C F+VF +L+EYA +  + K R + +++    L+KM    + + +  G      G P P    I  + E++
Sbjct:    1 YFGVSWLDPRLKINSSASEWSEARTGPKNEVNISPGSLRYIWYPELEIYGLEKFGRQRVLKEMSGVRIRKNKTIHYELGVRITISCRMMFDDYPLDAHTCQFQVGSCKY--QDITRPWGKSTYQLLSDYDSNKTVQCSSSYVYDQIRQRSLQHYITFEELPEKDRSVVLPSGTYAACGFQIQLVRKQMQYLVQVYLPSCMFVVTSWVSFLIKPEVVPGRMALLVTLFLVLINIFNSVRERAPISSKLNAIDLYLVVCIFLVFGALMEYAVILLLLKQRRKPKRSIDSGLRKMFNNGEAQPLQGGSTNFEAGRPTPQKKRIESRDELQ 325

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BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|74919269|sp|Q75NA5.2|GBRB_MUSDO (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; AltName: Full=MdRdl; Flags: Precursor)

HSP 1 Score: 444.891 bits (1143), Expect = 9.098e-150
Identity = 219/285 (76.84%), Postives = 247/285 (86.67%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMN 349
            L  ++ DFTLD YFRQFW DPRL++  RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+R+ H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIV+ISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRK RF+ +QKMAEQKK + ++
Sbjct:   95 LSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAVEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVVISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMTIQKMAEQKKQQQLD 379

HSP 2 Score: 112.464 bits (280), Expect = 4.341e-25
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL++ +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+R+ H+G+I RSIR   T
Sbjct:  104 LDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTIT 180

HSP 3 Score: 92.0485 bits (227), Expect = 1.886e-18
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0

Query:  492 ECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPDE 549
            + KK+++K+LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLHVSD VA+DLVLL  ++
Sbjct:  519 KVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLLGEEK 576

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BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|635377460|sp|P25123.4|GBRB_DROME (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; AltName: Full=Protein cyclodiene resistance; Flags: Precursor)

HSP 1 Score: 443.736 bits (1140), Expect = 6.260e-149
Identity = 220/282 (78.01%), Postives = 246/282 (87.23%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNE 346
            L  ++ DFTLD YFRQFW DPRL++  RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+R+ H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRK RF+A+QK+AEQKK +
Sbjct:   97 LSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQ 378

HSP 2 Score: 112.849 bits (281), Expect = 4.500e-25
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL++ +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+R+ H+G+I RSIR   T
Sbjct:  106 LDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTIT 182

HSP 3 Score: 91.6633 bits (226), Expect = 2.769e-18
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0

Query:  492 ECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLL 545
            + KK+++K+LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLHVSD VA+DLVLL
Sbjct:  550 KVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|44887891|sp|Q9BLY8.1|GBRB_DROSI (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor; AltName: Full=Protein cyclodiene resistance; Flags: Precursor)

HSP 1 Score: 443.351 bits (1139), Expect = 1.008e-148
Identity = 219/282 (77.66%), Postives = 246/282 (87.23%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNE 346
            L  ++ DFTLD YFRQFW DPRL++  RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+R+ H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIV+ISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRK RF+A+QK+AEQKK +
Sbjct:   97 LSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVVISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQ 378

HSP 2 Score: 112.849 bits (281), Expect = 4.380e-25
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL++ +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+R+ H+G+I RSIR   T
Sbjct:  106 LDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTIT 182

HSP 3 Score: 91.6633 bits (226), Expect = 2.818e-18
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0

Query:  492 ECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLL 545
            + KK+++K+LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLHVSD VA+DLVLL
Sbjct:  550 KVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|78099775|sp|Q61603.3|GLRA4_MOUSE (RecName: Full=Glycine receptor subunit alpha-4; Flags: Precursor)

HSP 1 Score: 265.774 bits (678), Expect = 8.912e-82
Identity = 140/306 (45.75%), Postives = 198/306 (64.71%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQF-----KVLGHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQ--MRKNRFLALQKMAEQKKNEA-MNQGGQGLG------DGGPPDHNGI 366
            D+ ++++ RQ W DPRL++   P    L +    ++ IW PD FF NEK A FH+ TT+N+ LRI   G +L SIRLT+  SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W +   +VQ++  ++LPQF     K LG+  K      ++ +  +    R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VFA+LLEYA+V +++++ +  MR  R    Q+M E    E+     G GLG      DGGP + + I
Sbjct:   90 DYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFMRLRRRQRRQRMEEDIIRESRFYFRGYGLGHCLQARDGGPMEGSSI 394

HSP 2 Score: 67.781 bits (164), Expect = 7.521e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W DPRL++ R    + L +    +  IW PD FF NEK A FH+ TTDN+ LRI   G +L SIR    L
Sbjct:   93 VNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLIL 169

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|74958176|sp|O18276.3|GBRB_CAEEL (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; Flags: Precursor)

HSP 1 Score: 265.388 bits (677), Expect = 1.246e-80
Identity = 172/498 (34.54%), Postives = 254/498 (51.00%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLG-HRQKTIEAR---NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGY----MAKRIQMRKNRFLALQKMAEQKKNEAMNQGG---QGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISPLATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKI--LRGLSPKQIRE--------LECKKNL----HKMLGIAPSD-------IDKYSRIFFPISFISFNLMYWIIYLHV 534
            +  +  D+TL MY  Q+W D RL + +   + ++ +  E+   IWVPDTF  N+K +Y H+ T  N+ LRI   G++   +RLT T SC M+L+ FP+D Q C +EIES+GYT S++  KWN  L +V       +PQF + G H + +I +    +Y RL+   Q  RS+GY++ Q Y+P  LIV++SWVSFW+N  AT ARV+LG+TTVLTMTT+      +LP+ISYVKSID+YL  CF  VFA+LLEYA+V Y      +      N +  +    ++ +  A+N       GL DG P      P+   +      MS S   + ++   S +K       P++ S              SPI PL      +              +E    PD+PR+ +     A P  + N K   L+G S  + +         +  K+++     +   + P+        IDKYSR+ FP+ FI FNL YW  Y+ V
Sbjct:   92 ISEVDMDYTLTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWNYPL-AVHGVEQADVPQFTITGFHTEDSIVSTATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRQSLPRISYVKSIDIYLVMCFVFVFAALLEYAAVNYSYWGRERGKGGGGNEW-PVNGANKEDRESAVNVQKWVPSGLMDGVPQ-----PQDRRVEALEEAMSTSNTAAQNNNFESTSK-------PKKRSS-------------SPIPPLCRAGNTI--------------SEESESPDYPRYSTTSLKGARPHASLNHKTHHLKGRSSARAKRRMTLARMNVSMKQSISGIGRRARKVIPTIRVRDVNLIDKYSRVVFPVCFIVFNLFYWSYYMMV 548

HSP 2 Score: 70.0922 bits (170), Expect = 1.967e-11
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL--DMYFRQF 85
            L MY  Q+W D RL +   I ++++ +  E+ + IWVPDTF  N+K +Y H+ T  N+ LRI   G +   +R   TL   M  R F
Sbjct:  101 LTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSCSMNLRNF 187

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|262527577|sp|Q5JXX5.3|GLRA4_HUMAN (RecName: Full=Glycine receptor subunit alpha-4; Flags: Precursor)

HSP 1 Score: 261.151 bits (666), Expect = 1.505e-80
Identity = 137/309 (44.34%), Postives = 194/309 (62.78%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQF-----KVLGHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQG------GQGLG------DGGPPDHNGI 366
            D+ ++++ RQ W DPRLS+   P    L +    ++ IW PD FF NEK A FH+ TT+N+ LRI   G +L SIRLT+  SC MDL+ FPMD Q C +++ESFGYTM D+ ++W +   +VQ++  ++LPQF     K LG   K      ++ +  +    R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VFA+LLEYA++ +++++    K      ++   Q+  E + Q       G GLG      DGGP + +GI
Sbjct:   91 DYRVNVFLRQQWNDPRLSYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCLMDLKNFPMDIQTCTMQLESFGYTMKDLVFEWLEDAPAVQVAEGLTLPQFILRDEKDLGCCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSRQ---HKEFIRLRRRQRRQRLEEDIIQESRFYFRGYGLGHCLQARDGGPMEGSGI 395

HSP 2 Score: 69.3218 bits (168), Expect = 2.021e-11
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W DPRLS+ R    + L +    +  IW PD FF NEK A FH+ TTDN+ LRI   G +L SIR    L
Sbjct:   94 VNVFLRQQWNDPRLSY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLIL 170

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|66774025|sp|Q91XP5.2|GLRA3_MOUSE (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor)

HSP 1 Score: 261.922 bits (668), Expect = 3.335e-80
Identity = 129/278 (46.40%), Postives = 190/278 (68.35%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEARNYS--RLAC-EIQF--VRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 343
            D+ ++++ RQ W DPRL++   P    L +    ++ IW PD FF NEK A FH+ TT+N+ LRI   G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D    VQ++  ++LPQF +   +      ++Y+  +  C E++F   R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV+LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VF++LLEYA+V +++++    ++ R+ R    +  A +K
Sbjct:   90 DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365

HSP 2 Score: 68.5514 bits (166), Expect = 4.116e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W DPRL++      + L +    +  IW PD FF NEK A FH+ TTDN+ LRI   G +L SIR   TL
Sbjct:   93 VNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTL 169

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|116242496|sp|O75311.2|GLRA3_HUMAN (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor)

HSP 1 Score: 261.922 bits (668), Expect = 3.335e-80
Identity = 129/278 (46.40%), Postives = 190/278 (68.35%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEARNYS--RLAC-EIQF--VRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 343
            D+ ++++ RQ W DPRL++   P    L +    ++ IW PD FF NEK A FH+ TT+N+ LRI   G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D    VQ++  ++LPQF +   +      ++Y+  +  C E++F   R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV+LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VF++LLEYA+V +++++    ++ R+ R    +  A +K
Sbjct:   90 DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365

HSP 2 Score: 68.5514 bits (166), Expect = 4.044e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W DPRL++      + L +    +  IW PD FF NEK A FH+ TTDN+ LRI   G +L SIR   TL
Sbjct:   93 VNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTL 169

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|121580|sp|P24524.1|GLRA3_RAT (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor)

HSP 1 Score: 261.922 bits (668), Expect = 3.406e-80
Identity = 129/278 (46.40%), Postives = 190/278 (68.35%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEARNYS--RLAC-EIQF--VRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKR----IQMRKNRFLALQKMAEQK 343
            D+ ++++ RQ W DPRL++   P    L +    ++ IW PD FF NEK A FH+ TT+N+ LRI   G +L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W D    VQ++  ++LPQF +   +      ++Y+  +  C E++F   R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV+LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VF++LLEYA+V +++++    ++ R+ R    +  A +K
Sbjct:   90 DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEK 365

HSP 2 Score: 68.5514 bits (166), Expect = 4.301e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W DPRL++      + L +    +  IW PD FF NEK A FH+ TTDN+ LRI   G +L SIR   TL
Sbjct:   93 VNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTL 169

[Close]

BLAST of gaba-alpha subunit vs. SwissProt
Match: gi|66774003|sp|Q7TNC8.1|GLRA2_MOUSE (RecName: Full=Glycine receptor subunit alpha-2; Flags: Precursor)

HSP 1 Score: 260.766 bits (665), Expect = 5.854e-80
Identity = 133/291 (45.70%), Postives = 188/291 (64.60%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKW-NDGLTSVQISGDVSLPQF-----KVLGHRQKTIEARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMA---KRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLG 356
            D+ ++++ RQ W D RL++   P    L +    ++ IW PD FF NEK A FH  TT+N+ LRI   G++L SIRLT+T SCPMDL+ FPMD Q C +++ESFGYTM+D+ ++W +DG   VQ++  ++LPQF     K LG+  K      ++ +  +    R MGYYLIQ+YIPS LIVI+SWVSFW+N  A PARV+LG+TTVLTMTT  + + A+LPK+SYVK+ID+++  C   VFA+LLEYA+V +++   K     + R     K  +  +    N  G G+G
Sbjct:   91 DYRVNIFLRQQWNDSRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDG--PVQVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNKEEDVTRESRFNFSGYGMG 378

HSP 2 Score: 66.6254 bits (161), Expect = 1.615e-10
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFTL 78
            ++++ RQ W D RL++      + L +    +  IW PD FF NEK A FHD TTDN+ LRI   G +L SIR   TL
Sbjct:   94 VNIFLRQQWNDSRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTL 170

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|115361507|gb|ABI95854.1| (GABA-alpha subunit, partial [Lepeophtheirus salmonis])

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 279/323 (86.38%), Postives = 285/323 (88.24%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEAR----NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSS 387
            +  +  DFTLDMYFRQFWQDPRLSF  RPGL KLVVGAEYI LIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEA     NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARV LGVTTV TMTTLMASTNAALPKISYVKSIDVYLGACFF+VFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMN     L DG   DH G+PKQT +   +HD      GSS
Sbjct:   48 VSEVMMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVHTMTTLMASTNAALPKISYVKSIDVYLGACFFIVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG---DH-GMPKQTTVHFKVHDPKMHCKGSS 366

HSP 2 Score: 136.346 bits (342), Expect = 5.829e-31
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LDMYFRQFW+DPRLSF    GLEKLVVGAEYI+LIWVPDTFFVNEK AYFH ATT+NQFLRILHTG ILRSIR   T
Sbjct:   57 LDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTIT 133

HSP 3 Score: 83.5741 bits (205), Expect = 2.533e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query:  492 ECK-KNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPD 548
            EC  K+L+KM G+  SDIDKYSR+ FP++F    LMYWIIY H+SD+V +DLV LHPD
Sbjct:  421 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCLQLMYWIIYQHLSDDVVDDLVYLHPD 478

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|1325285574|ref|XP_023327509.1| (gamma-aminobutyric acid receptor subunit beta-like [Eurytemora affinis])

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 315/523 (60.23%), Postives = 359/523 (68.64%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEAR----NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPD-HNGIPKQTEIRINMHD---------MSRSG----PGSSSSVRFSNNKGGILVNSPRQVSHHHHP------LNQHIPSGLSP--ISPLATYQGHVPMAVFNNPQ--MQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRG-----------------LSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLH 546
            +  +  DFTLDMYFRQFW+DPRL FE + GL KLVVGAEYINLIW PDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP            FGYTM+DIRY+WNDGL SVQ+SGDVSLPQFKVLGHRQKTIEA     NYSRLACEIQFVRSMGYYLIQIYIPSSLIV+ISWVSFWLNRGATPARV LGVTTVLTMTTL++STN+ALPKISYVKSIDVYL ACFFMVFASL+EYASVGYMAKRIQMRKNRFLA+QKMAEQKKNEA++     + +    D  + +PKQTEIR+NMHD         M R G     GS+S +    N GG L      + HH  P       N     G+SP  I   +     V    FN     +  + +E ++ PD     S+ H N     AP    L+                   +P  IR      +++ MLG+A SDIDKYSRI FP++F  F LMYW+IY H++    +DLVLL+
Sbjct:   75 VSEVMMDFTLDMYFRQFWRDPRLQFEKKKGLEKLVVGAEYINLIWTPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFP-----------PFGYTMNDIRYEWNDGLNSVQVSGDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVVISWVSFWLNRGATPARVGLGVTTVLTMTTLISSTNSALPKISYVKSIDVYLAACFFMVFASLIEYASVGYMAKRIQMRKNRFLAIQKMAEQKKNEALHSSNANIHEAVNADVSSNMPKQTEIRLNMHDPLLRRNAGSMMRGGGQGFTGSTSHLLPGANHGGPLPQIQDGLLHHQAPPLLQCKKNLQKMGGISPSDIDKYSRVLFPVSFTCFNLMYWIIYMNISEEVV-PDLVLLGSSVHFNLGVKRAPEHLELKYNTTLYKHNSIPMNMVPLAAPLSIRS---HSHINSMLGMAASDIDKYSRIVFPVTFFCFQLMYWVIYDHLAQVYIDDLVLLN 582

HSP 2 Score: 138.272 bits (347), Expect = 3.910e-31
Identity = 63/77 (81.82%), Postives = 66/77 (85.71%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LDMYFRQFWRDPRL F++  GLEKLVVGAEYI LIW PDTFFVNEK AYFH ATT+NQFLRILHTG ILRSIR   T
Sbjct:   84 LDMYFRQFWRDPRLQFEKKKGLEKLVVGAEYINLIWTPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTIT 160

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|1277390359|gb|ATV93516.1| (gamma-aminobutyric acid A receptor subunit 1 [Lepeophtheirus salmonis])

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 282/323 (87.31%), Postives = 286/323 (88.54%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIEAR----NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSS 387
            L  +  DFTLDMYFRQFWQDPRLSF  RPGL KLVVGAEYI LIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGL SVQIS DVSLPQFKVLGHRQKTIEA     NYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGA PARV LGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMN     L DG   DH G+PKQT +   +HD      GSS
Sbjct:   80 LSEVEMDFTLDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLNSVQISSDVSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGAAPARVGLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNASNAALNDG---DH-GMPKQTTVHFKVHDPKMHCKGSS 398

HSP 2 Score: 135.961 bits (341), Expect = 1.073e-30
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LDMYFRQFW+DPRLSF    GLEKLVVGAEYI+LIWVPDTFFVNEK AYFH ATT+NQFLRILHTG ILRSIR   T
Sbjct:   89 LDMYFRQFWQDPRLSFTGRPGLEKLVVGAEYIRLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTIT 165

HSP 3 Score: 85.5001 bits (210), Expect = 5.924e-14
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 0

Query:  492 ECK-KNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPD 548
            EC  K+L+KM G+  SDIDKYSR+ FP++F  F LMYWIIY H+SD+V +DLV LHPD
Sbjct:  453 ECDMKDLNKMFGMTASDIDKYSRVIFPVTFTCFQLMYWIIYQHLSDDVVDDLVYLHPD 510

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|766927524|ref|XP_011495767.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X2 [Ceratosolen solmsi marchali])

HSP 1 Score: 513.842 bits (1322), Expect = 2.111e-175
Identity = 290/485 (59.79%), Postives = 325/485 (67.01%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGL-GDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPR-QVSHHHHPLNQHIPSGLSPISPL-ATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLH 546
            L  ++ DFTLD YFRQFW DPRL+F+ RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC IEIESFGYTM DIRYKWN+GLTSV +S DVSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF    K+AE  K    N G  G+ GD G  DH   PKQTE+R  +HD              +++KGG L N+   +      P  QH+      IS L A    H  +  F  P                                                      H +LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL 
Sbjct:   83 LSEVKMDFTLDFYFRQFWTDPRLAFKKRPGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCNIEIESFGYTMRDIRYKWNEGLTSVGVSNDVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRF---AKIAESMKAARENPGPPGVPGDHG--DH--APKQTEVRFKVHDPK------------AHSKGGTLENTINGRADEEAPPAPQHLIHPGKDISKLYAQEDAHSALQSFPKPTK----------------------------------------------------HTILGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 496

HSP 2 Score: 113.62 bits (283), Expect = 3.475e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI H+G+I RSIR   T
Sbjct:   92 LDFYFRQFWTDPRLAFKKRPGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHSGSITRSIRLTIT 168

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|805797817|ref|XP_012143665.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta [Megachile rotundata])

HSP 1 Score: 510.375 bits (1313), Expect = 1.249e-174
Identity = 286/477 (59.96%), Postives = 325/477 (68.13%), Query Frame = 0

Query:   75 DFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGL-GDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISPLATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLH 546
            DFTLD YFRQFW DPRL+F+ RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF   QK+AE  K    N G  G+ GD G  DH   PKQTE+R  +HD              +++KGG L N                           T  G                +E   P       +  +G A    AP P+ L          +   K++ K+ G+ PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL 
Sbjct:   51 DFTLDFYFRQFWTDPRLAFKKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG--DH--APKQTEVRFKVHDPK------------AHSKGGTLEN---------------------------TINGRA--------------DEEAAPAKGGTLENTINGRADEEAAPAPQHL----------IHPGKDISKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 457

HSP 2 Score: 114.39 bits (285), Expect = 1.306e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI H+G+I RSIR   T
Sbjct:   54 LDFYFRQFWTDPRLAFKKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 130

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|269856295|gb|ACZ51430.1| (GABA-gated chloride channel, partial [Nasonia vitripennis])

HSP 1 Score: 510.375 bits (1313), Expect = 1.249e-174
Identity = 289/485 (59.59%), Postives = 324/485 (66.80%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGL-GDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPR-QVSHHHHPLNQHIPSGLSPISPL-ATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLH 546
            L  ++ DFTLD YFRQFW DPRL+F+ R G+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI HTG I RSIRLTITASCPM+LQYFPMDRQLC IEIESFGYTM DIRYKWN+GL SV +S DVSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF    K+AE  K    N G  G+ GD G  DH   PKQTE+R  +HD              +++KGG L N+   +      P  QH+      IS L A  + H  +  F  P                                                      H +LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL 
Sbjct:   44 LSEVKMDFTLDFYFRQFWTDPRLAFKKRAGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHTGSITRSIRLTITASCPMNLQYFPMDRQLCNIEIESFGYTMRDIRYKWNEGLASVGVSNDVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRF---AKIAESMKAARENPGPPGVPGDHG--DH--APKQTEVRFKVHDPK------------AHSKGGTLENTINGRADEEAPPPPQHLIHPGKDISKLYAQEEAHSALQTFPKPTK----------------------------------------------------HTILGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 457

HSP 2 Score: 115.931 bits (289), Expect = 5.257e-24
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI HTG+I RSIR   T
Sbjct:   53 LDFYFRQFWTDPRLAFKKRAGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHTGSITRSIRLTIT 129

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|1032747868|ref|XP_016845784.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X11 [Nasonia vitripennis])

HSP 1 Score: 510.375 bits (1313), Expect = 1.366e-174
Identity = 288/491 (58.66%), Postives = 324/491 (65.99%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGL-GDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISPLATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHP--------SNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLH 546
            L  ++ DFTLD YFRQFW DPRL+F+ R G+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI HTG I RSIRLTITASCPM+LQYFPMDRQLC IEIESFGYTM DIRYKWN+GL SV +S DVSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF    K+AE  K    N G  G+ GD G  DH   PKQTE+R  +HD              +++KGG L N+    +    P                                         PP H  HP        + +  ++A    P P                    H +LGI PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL 
Sbjct:   45 LSEVKMDFTLDFYFRQFWTDPRLAFKKRAGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHTGSITRSIRLTITASCPMNLQYFPMDRQLCNIEIESFGYTMRDIRYKWNEGLASVGVSNDVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRF---AKIAESMKAARENPGPPGVPGDHG--DH--APKQTEVRFKVHDPK------------AHSKGGTLENTINGRADEEAP----------------------------------------PPPQHLIHPGKDISKLYAQEEAHSALQTFPKP------------------TKHTILGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 458

HSP 2 Score: 115.546 bits (288), Expect = 5.362e-24
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI HTG+I RSIR   T
Sbjct:   54 LDFYFRQFWTDPRLAFKKRAGVEILSVGSEFIKNIWVPDTFFVNEKQSYFHVATTSNEFIRIHHTGSITRSIRLTIT 130

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|1101351108|ref|XP_018901515.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta isoform X1 [Bemisia tabaci])

HSP 1 Score: 512.301 bits (1318), Expect = 2.257e-174
Identity = 282/488 (57.79%), Postives = 332/488 (68.03%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKM-AEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISP--LATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPDE 549
            L  ++ DFTLD YFRQFW DPRL+F+ RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF+A+QK+ A+QKK    +  G G  D     H  +    +  I +  +                K  ++     +VS      + H+     P +      Y+ H P A F    ++   N      +    P+ QH      I PN                  K+++K+ GI PSDIDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL  D+
Sbjct:   83 LSEVKMDFTLDFYFRQFWTDPRLAFQKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFMAIQKLQADQKKGVEAHVSGVGGDDHQATKHTSVASLNQRHIQVQGL----------------KNFLIYQPKEKVSSQ---CSSHMQQYTRPRNSDNEVRYKVHDPKAHFKGGTLENTING--RADEEAATPAPQH-----LIHPN------------------KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK 526

HSP 2 Score: 114.775 bits (286), Expect = 2.165e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI H+G+I RSIR   T
Sbjct:   92 LDFYFRQFWTDPRLAFQKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 168

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|377550340|dbj|BAL63029.1| (GABA-gated chloride channel subunit [Sogatella furcifera])

HSP 1 Score: 509.99 bits (1312), Expect = 3.348e-174
Identity = 284/485 (58.56%), Postives = 324/485 (66.80%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISPLATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPDE 549
            L  ++ DFTLD YFRQFW DPRL+F  RPG+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRF+A+QK+AEQK+ EA      G+  G P DH   PKQTE+R  +HD              ++ KGG L N+                     I+  A  + H+P                   P H  HP                 L G++P  I                    DKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLVLL  D+
Sbjct:   80 LSEVKMDFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFMAIQKIAEQKQKEAAGH-VPGVPGGDPADHA--PKQTEVRFKVHDPK------------AHFKGGTLENT---------------------INGRADEEVHLPA------------------PQHLIHPGKDINK-----------LYGITPSDI--------------------DKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK 479

HSP 2 Score: 113.62 bits (283), Expect = 3.498e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI H+G+I RSIR   T
Sbjct:   89 LDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 165

[Close]

BLAST of gaba-alpha subunit vs. nr
Match: gi|1351635298|ref|XP_024083544.1| (gamma-aminobutyric acid receptor subunit beta isoform X9 [Cimex lectularius])

HSP 1 Score: 512.686 bits (1319), Expect = 3.665e-174
Identity = 287/497 (57.75%), Postives = 336/497 (67.61%), Query Frame = 0

Query:   69 LRSIRYDFTLDMYFRQFWQDPRLSFESRPGLRKLVVGAEYINLIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRLTITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGDVSLPQFKVLGHRQKTIE----ARNYSRLACEIQFVRSMGYYLIQIYIPSSLIVIISWVSFWLNRGATPARVSLGVTTVLTMTTLMASTNAALPKISYVKSIDVYLGACFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEAMNQGGQGLGDGGPPDHNGIPKQTEIRINMHDMSRSGPGSSSSVRFSNNKGGILVNSPRQVSHHHHPLNQHIPSGLSPISPL------------ATYQGHVPMAVFNNPQMQQDYNEYLLPPDHPRHPSNQHGNAAPTIAPNPKILRGLSPKQIRELECKKNLHKMLGIAPSDIDKYSRIFFPISFISFNLMYWIIYLHVSDEVAEDLVLLHPDE 549
            L  ++ DFTLD YFRQFW DPRL+F  + G+  L VG+E+I  IWVPDTFFVNEK +YFH ATT N+F+RI H+G I RSIRLTITASCPM+LQYFPMDRQLC+IEIESFGYTM DIRYKWN+G  SV +S +VSLPQFKVLGHRQ+ +E      NYSRLACEIQFVRSMGYYLIQIYIPS LIVIISWVSFWLNR ATPARV+LGVTTVLTMTTLM+STNAALPKISYVKSIDVYLG CF MVFASLLEYA+VGYMAKRIQMRKNRFLA+QK+A+++     NQ  +    GG PDH   PKQT  R   H +    P   SS   +      +    RQ             + L P  P+              Y+ H P A F   +++   N                G A   +A    I+  + P+ I  L+  K+ +K+ GI  S IDKYSRI FP+ F+ FNLMYWIIYLH+SD VA+DLV L  D+
Sbjct:   83 LSEVKMDFTLDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFLAIQKLAQEQ-----NQKTEPHPPGGDPDH--APKQT--RKKGHQVQMRDPSIISSYAATLPPSKAVHQERRQQMQQTRDPTSIYAATLPPPKPVHPERRQQMQQTEVRYKLHDPKAHFKGGKLENTIN----------------GRAEEEVAGRSAIVIPI-PQHI--LQPTKDYNKLYGITASGIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVFLEKDK 551

HSP 2 Score: 115.161 bits (287), Expect = 1.576e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 0

Query:    1 LDMYFRQFWRDPRLSFDRGIGLEKLVVGAEYIKLIWVPDTFFVNEKKAYFHDATTDNQFLRILHTGAILRSIRYDFT 77
            LD YFRQFW DPRL+F +  G+E L VG+E+IK IWVPDTFFVNEK++YFH ATT N+F+RI H+G+I RSIR   T
Sbjct:   92 LDFYFRQFWTDPRLAFRKQKGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 168

The following BLAST results are available for this feature:

BLAST of gaba-alpha subunit vs. L. salmonis genes
BLAST of gaba-alpha subunit vs. SwissProt
BLAST of gaba-alpha subunit vs. nr

BLAST of gaba-alpha subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000009520	6.887e-44	41.62	supercontig:LSalAtl2s:LSalAtl2s612:286575:292619:1...	[more]
EMLSAG00000010666	9.473e-44	86.75	supercontig:LSalAtl2s:LSalAtl2s706:296770:341480:-...	[more]
EMLSAG00000010665	1.902e-43	78.18	supercontig:LSalAtl2s:LSalAtl2s706:273592:296720:-...	[more]
EMLSAG00000000070	6.792e-38	34.26	supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-...	[more]
EMLSAG00000001321	1.106e-34	31.47	supercontig:LSalAtl2s:LSalAtl2s1223:193582:196888:...	[more]
EMLSAG00000004920	9.153e-34	37.95	supercontig:LSalAtl2s:LSalAtl2s259:1063168:1099810...	[more]
EMLSAG00000011250	8.659e-33	29.78	supercontig:LSalAtl2s:LSalAtl2s76:68800:74845:-1 g...	[more]
EMLSAG00000003185	2.357e-31	26.85	supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1...	[more]
EMLSAG00000008455	7.905e-28	28.89	supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1...	[more]
EMLSAG00000011211	6.431e-27	26.91	supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1...	[more]

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BLAST of gaba-alpha subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|74919269\|sp\|Q75NA5.2\|GBRB_MUSDO	9.098e-150	76.84	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|635377460\|sp\|P25123.4\|GBRB_DROME	6.260e-149	78.01	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|44887891\|sp\|Q9BLY8.1\|GBRB_DROSI	1.008e-148	77.66	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|78099775\|sp\|Q61603.3\|GLRA4_MOUSE	8.912e-82	45.75	RecName: Full=Glycine receptor subunit alpha-4; Fl...	[more]
gi\|74958176\|sp\|O18276.3\|GBRB_CAEEL	1.246e-80	34.54	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|262527577\|sp\|Q5JXX5.3\|GLRA4_HUMAN	1.505e-80	44.34	RecName: Full=Glycine receptor subunit alpha-4; Fl...	[more]
gi\|66774025\|sp\|Q91XP5.2\|GLRA3_MOUSE	3.335e-80	46.40	RecName: Full=Glycine receptor subunit alpha-3; Fl...	[more]
gi\|116242496\|sp\|O75311.2\|GLRA3_HUMAN	3.335e-80	46.40	RecName: Full=Glycine receptor subunit alpha-3; Fl...	[more]
gi\|121580\|sp\|P24524.1\|GLRA3_RAT	3.406e-80	46.40	RecName: Full=Glycine receptor subunit alpha-3; Fl...	[more]
gi\|66774003\|sp\|Q7TNC8.1\|GLRA2_MOUSE	5.854e-80	45.70	RecName: Full=Glycine receptor subunit alpha-2; Fl...	[more]

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BLAST of gaba-alpha subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|115361507\|gb\|ABI95854.1\|	5.829e-31	86.38	GABA-alpha subunit, partial [Lepeophtheirus salmon...	[more]
gi\|1325285574\|ref\|XP_023327509.1\|	3.910e-31	60.23	gamma-aminobutyric acid receptor subunit beta-like...	[more]
gi\|1277390359\|gb\|ATV93516.1\|	1.073e-30	87.31	gamma-aminobutyric acid A receptor subunit 1 [Lepe...	[more]
gi\|766927524\|ref\|XP_011495767.1\|	2.111e-175	59.79	PREDICTED: gamma-aminobutyric acid receptor subuni...	[more]
gi\|805797817\|ref\|XP_012143665.1\|	1.249e-174	59.96	PREDICTED: gamma-aminobutyric acid receptor subuni...	[more]
gi\|269856295\|gb\|ACZ51430.1\|	1.249e-174	59.59	GABA-gated chloride channel, partial [Nasonia vitr...	[more]
gi\|1032747868\|ref\|XP_016845784.1\|	1.366e-174	58.66	PREDICTED: gamma-aminobutyric acid receptor subuni...	[more]
gi\|1101351108\|ref\|XP_018901515.1\|	2.257e-174	57.79	PREDICTED: gamma-aminobutyric acid receptor subuni...	[more]
gi\|377550340\|dbj\|BAL63029.1\|	3.348e-174	58.56	GABA-gated chloride channel subunit [Sogatella fur...	[more]
gi\|1351635298\|ref\|XP_024083544.1\|	3.665e-174	57.75	gamma-aminobutyric acid receptor subunit beta isof...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold155_size301336	supercontig	scaffold155_size301336:267752..273535 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:GABA-A receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold155_size301336-snap-gene-2.8-mRNA-1	maker-scaffold155_size301336-snap-gene-2.8-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold155_size301336:267752..273535+

gene from alignment at scaffold155_size301336:267752..273535+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold155_size301336-snap-gene-2.8 ID=maker-scaffold155_size301336-snap-gene-2.8|Name=gaba-alpha subunit|organism=Tigriopus kingsejongensis|type=gene|length=5784bp|location=Sequence derived from alignment at scaffold155_size301336:267752..273535+ (Tigriopus kingsejongensis)
GATTTCACGCTGGACATGTACTTCCGTCAGTTTTGGCGTGACCCCCGGCT
GTCCTTTGACCGTGGAATAGGCCTTGAAAAGCTCGTTGTGGGCGCTGAGT
ACATTAAGCTGATCTGGGTGCCGGACACCTTTTTTGTGAATGAGAAAAAG
GCATACTTTCACGACGCCACCACAGACAACCAGTTTTTGAGAATCTTGCA
CACGGGGGCCATTTTGAGAAGTATTAGGTACGTGACAGCCCCGGAGGCCA
CACTTTAAGCACCCCGGAGCTGCCAAAGGGCCTTCTTCCTCTTGCTCTTT
GGCCATCTCGCCCTCACTCTGTCTCTCTCTCTATCATCTCTCTCTTAATG
CATTACTGGCCCTCACAAAGTTGGCCTGTAGAACTCAAAAAAAAAATAGT
ATGGTCGACTGCACAGATAAACTTAATAACTTTCCAGTAGCATTGGTCAA
CCCACCTCCCGTTCACTCTCAACCAAACATACCTACTACCTACTGTATAA
TTCAAAGAAAACTTGCCATTGCATACCACATTCCAACCACCAATGGGGTC
AGTACAAGCACAGATTGACAATTTCCACACTGAGCTGCATGTACAGAGTT
GGCACACCACATGCCAGGGTCACCCAGTGTACCTCAAGTAAATACATATC
ATCATCACAACCGGCTCAACCACCTACTACTACTACTCTTAGCGTCTCGC
ATACCACCCCACAACTTGTGAAGCAAAATATATTACACACGTACACATTT
CTTGGCGCTCTGGCTTCAAGCTCTCTAACGACGACCTTCGTCCAGTTTGA
TTTTCCACCGTTCAGTTCACCCAATCCACCTCCTGCTCCCTCCCCTATCC
TTGATTCCCGTCCATCATCAGTGCATCCAAAGGAAGATGGTCTACATGGA
ATTGTGGTGGATGAGTTTGGTGGTCACGGATCGGACCTCATCCTTAACCC
GCGCTCTCTAATCTTTCCAGGATTTCACCTTGGACATGTACTTTCGGCAG
TTCTGGCAAGACCCGCGACTCTCCTTCGAGAGTCGCCCAGGCCTCCGAAA
GCTCGTGGTTGGGGCTGAGTATATCAACTTGATCTGGGTTCCAGACACCT
TCTTTGTTAATGAGAAAACTGCCTACTTTCACAAAGCCACCACGGAGAAC
CAGTTTCTTCGGATCCTGCACACGGGCGAAATTTTGCGAAGTATTAGGTA
CAGTAGACTACACACGTGTGGAAACGTCGAGTGCTGCGTGACTAGCAACG
TGGGAGAGTCTTGAGAATGGATTGATTGATTGATTAGTGTGCCCAGCCTA
TACCATCCATACTGTTGGCAGAATCCTTTGATGTCCCCAGCCAGGAAGCA
CGATCAGAAAAAGTTAATAACCCTGTTTCCCAAAGCCTTTCCCGGGGAAA
TTTGGTGGATCCCGGTGCTCATAATGTTGTGTCCCCAATATTTATGGAGG
CTTTCCCAAACGGCAATGGGACCACCAAGTTATGGCACGCTCTCTCCTCG
CCCAGGAAAGGCTTCTTCCCCCTTTTTTTCTCCTTGTGCCATAGTCTCCT
TCCGCTTCGTTGTCCACGTTCCAGATGAGGCCAAGGTGTTCCCAATATGG
AGCTTGCTTTAGTGGTTCCCCAAGTACCCGCAGCTACAGATACTGTGTGT
ACATATGTACGCATAAATATATCCCTTTGCCTCCTCTGCCCGCCTCTCGT
AACACTGAGTTATGTTGCGACGAGTTTAGAGCATTTTATTCCTAGCCCAC
CTCGGCTTCTTTGTTCGGTTCCCTTTTTTGGGGTGAGCGAGAATAAATCG
AACATTGTCTGTCATCCGGATCCAATCATGGCCAAGCTTCCCTCTCAAAG
GGGAATTGGAACAATGCAGGGGTATTCCTCGAGATCCCCGATTCACTGCC
ACCCGCCTGATCCAGGAGGATTAATGGGGGGTTCAAGGTTAAGATATGCA
CAGGGCCTCAATACCAACCGTGCATTGACCTGAAGAGAAATCAATATCCC
CAATCCAACTCTTTACACCAAGCCTCGTTTTCTCTCTCTCTCATCGGCAC
AAACGATTGGTTTGTGAAGCTGGCCAAGAACATCCACGCATGATCAATCT
GATGCTTTCCACCATCTTGATATACATATTTGTATACAACAAATGTACTA
CACTTGCACACACAGTACTGCCCTGCAGAAGTGGTGGAACAGAGGGCACT
CTCTCTGCACACATTACGGAAAATACCACCTAACCCTGGGCCTCCTCATG
TCAGAAACAATTACCTTGAGGATGTATGCCCTCTTTAGGGGAAATATCCG
CCCTTAGTACTACCACTATATTGGATGCTTCCCCAAACAAACGTAGATTG
GAGTAGTTGGTTGATAGATTATTGGTGTACGCGTATATGAATAGACATTC
ATCTTTCCCCGTGCATGCCTCTTCTTGTACCAAGTCGTATCAAGGGCTCC
ACTACCAATGTGTTTCCGACTCCTTGGATGCAAATTGAACCAAGCAGACA
TCAGGTTGGTTCGACGCTCTTGATGACATGACCAGTCTCTCCGACCGCTG
GACTCGTTCTATCGGAAGAGTCTGGCTGGAAACTCGAGAATGCCGCCCTA
GCTGCCCCCATTTGGACCAGCTCCAACCATTGTCTACGTGGTGTGAAATG
CAACCCCATCTTTCAGGCTGACGATCACCGCCTCGTGTCCCATGGACCTA
CAGTACTTCCCCATGGACCGTCAGTTGTGTTATATCGAAATTGAGAGCTG
TGAGTGACTTGGGGGGGGGGGCTCTCATCTTGGAGAATAGGCTCCCTGAC
TCCCATTTTCCCATTTCAGTTGGCTACACGATGAGTGATATTCGATACAA
GTGGAACGACGGTCTGACCTCGGTTCAGATCTCCGGTGATGTGTCCCTTC
CACAGTTTAAGGTCCTAGGCCATAGACAAAAAACGATCGAGGCCAGTCTG
TCTACAGGTACGGCCTCCATTCGGCCATTATTCACCGTTTATGGCACCCT
TTAGTGCCTTGAAATTGGAACGCGTCCAGAAGCTCTTGGAACAGATGGGA
ATGAATTCAATTCCACTAATTGATGGCTCTCCTTTTTCCTTGGGCTCACT
TGGGAGATTTGGGAAATTACGAATATTGGAGTGCTCCACAAAAATGGAAC
ACATTCACACGGGGGTCTCGTGGCTCATATAGACCCCATTTTCCCCTGTT
TTGTCAAGTAATCTCGGCTAATGAGTGGCATACCCTTGAGGGAATCCATT
AAAAAAGACTGTCGTCTTGGGGGTCAGTGGTGAGAGGCTAAGTAATTGGA
CATCCCTTGCTCCCACCAGGAAACTACTCTCGCTTGGCCTGCGAGATCCA
GTTCGTGCGCTCCATGGGATACTACCTGATCCAAATCTACATCCCCTCCA
GTCTGATCGTGATCATCTCGTGGGTGTCCTTCTGGCTGAATCGAGGTGCC
ACGCCCGCTCGGGTCAGCCTGGGCGTGACCACCGTGCTGACCATGACCAC
GTTGATGGCTTCGACCAACGCAGCGCTTCCAAAGATCTCCTATGTGAAGT
CCATCGACGTGTACCTCGGGGCCTGTTTCTTCATGGTGTTTGCCTCACTG
CTCGGTAAATGGTCCCCAATTGAGTCGTAAGCAATTGCACGCTCGCTCCC
CGGATTCGGCTCGGCCTGGTTGGTGGGCATGACGGGTTGGCTGGCAAATC
AGGCTGTTCTTTACTGCATTGTTCTGGGAAGTGAGTGGCTGGAGGAGGCG
TGATTTATCCTTGTTATGGCCTTGTTTCAGAGTATGCCAGTGTTGGCTAC
ATGGCCAAGCGGATCCAGATGCGAAAGAACCGCTTTCTGGCCCTGCAGAA
AATGGCGGAGCAGAAGAAAAATGAAGCCATGAATCAGGGAGGGCAGGGGC
TGGGCGATGGAGGCCCTCCGGATCATAATGGTATCCCTAAGCAAACGGTA
AGTAGCCGATAACCATCCTCAGGCGGCGTTACTGCAAATATATTTCAGCC
CTGGAACAAGCCAGCCACACAGATTTCGGCTGGGCTCCTTAGGCACTTTT
TGGCAGGGACTCAGAGGTTGATGGACAATTCTTTGTGCAACTTTTCCCTT
CATACTGTTTTCATATCACATTGTATATTACTCCTCCCCCAGCTGTGAAT
ACACATATAAGGCCTTAGAGGTACTCTAGTAGGTATGAGCGGAGCAGGCG
GGCCGTCGTGGAGGTGAACATCTGCCACGGAGTTGGTGTCTGTGTGTACG
TACAACTGTGCCCACTCATACCAAGGTAGAGGAGGATGACTGACAGACCT
GTAGGAACTGCTCATCATGATGACCACCATGATGATAAACTCACTGACAA
GACTCTATCTCTTTCTGACACGAAACTACCACTGTGGTCTTTGTCGTTGC
CGTCGTCGCGGTCGTCGCTACGAGCATCCTCATTGTGTGCCTAGATACTT
TACAACTGCTCCTTTCCAAGGGCTCGCCTTTCGACTGTAACGTGTCTCGG
GCCTCGTGTGCTATTTATCATTTCTAGCGTGTCAAATCTACTTCTAAGTT
CGGGTGCACCCTAGGCTAGACCAACAACTACGATTCATGGTCCACTACTC
ACTGTGGGTTGAGCTAGGTGCTAGTGTTCTCGAGTTAGGGTGCTCCAAAT
GTTGCCCATTCTTTCTCCACCAACGTTCCATTCTTCCCCCGAACACCACA
AGTCTGGGTTTGGAGCCTCGCACAAAAATCATGAACCCCAAGCTCGGAAC
TCTTGGCAACTTAACTTTGGGGAAGATCAAGTCAGAAGCAACCGTTGGGG
CTCTTGGGAGAGCGAGATAGGGCGAGGATCACTCGATCCGAGAAATAGCT
TGGCCTCTCCCAGGATCAAAGTTGTGCACTGTTTGGGGGACGGGGAAGAC
GCTCGTCGATCTCCGAGATGTCTGTTTGTTTCTTCGTGGCCCACCCAGGC
AGGGCTGCAGCCAATTGCTTGTTGATCTGTAACATGGAACATATGGTGCA
CCCTAAGTACGGCACGTGGACCATGACTGTGCTTCTTGCATGCCATTTGT
ATCGGAGACTCTGAAGCCGAGAACTGCACTCCATTTGCTATGATTGTTTT
CATTTGCTTAGCGCTTGTCTCATATGTGTGTGCGACCCATAAAAGTGGCA
GGATTGAATGCCAGTGGCCACATGCTCTTCTAGACCTTGCCAGCCCAGGC
AAGTGCCCTAACTAGTTGTGTTTCCATATTTCCCATGTTTTCAGGAGATT
CGAATAAACATGCACGACATGAGCAGATCCGGGCCTGGGTCTTCATCGTC
TGTGCGCTTTTCCAACAATAAAGGGGGCATACTTGTCAACTCTCCGAGAC
AGGTTAGCCACCACCATCATCCCTTGAACCAGCACATACCTTCTGGCCTG
AGTCCCATCTCGCCTCTGGCCACCTACCAGGGACACGTGCCCATGGCGGT
ATTCAACAACCCGCAGATGCAACAGGACTATAACGAGTATCTCCTCCCTC
CAGACCATCCCAGACATCCCTCCAACCAACATGGTAACGCGGCTCCCACG
ATTGCTCCCAACCCTAAGATCCTACGCGGCCTCAGTCCCAAGCAGATCCG
GGAGTTGGAGTGCAAGAAGAACTTGCACAAGATGCTTGGGATTGCTCCGT
CGGACATTGACAAGTACTCCCGGATCTTCTTCCCCATCTCCTTCATCTCC
TTCAACCTCATGTATTGGATTATCTACCTCCATGTTAGCGATGAGGTGGC
CGAAGATCTGGTCTTGCTCCATCCCGACGAGTAG

Synonyms

The feature 'gaba-alpha subunit' has the following synonyms


Synonym
Tk03784

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