vasa intronic gene, maker-scaffold1628_size33005-snap-gene-0.7 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of vasa intronic gene vs. L. salmonis genes
Match: EMLSAG00000012946 (supercontig:LSalAtl2s:LSalAtl2s989:10662:14348:1 gene:EMLSAG00000012946 transcript:EMLSAT00000012946 description:"augustus_masked-LSalAtl2s989-processed-gene-0.1") HSP 1 Score: 149.058 bits (375), Expect = 1.128e-41 Identity = 98/167 (58.68%), Postives = 124/167 (74.25%), Query Frame = 0 Query: 242 GRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEENP-AEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNFTT 407 GRG P KR+F+RKSGDD+T GVK VDKR+GGGSHNWGT EDE+KA +DK NVS E+P + R G D +D+ + + KT+TL+EW+A Q K+ P +N RKAGEG + + WKKTYAYKKEKE+ DD++E+D ELYPQRVNRQ+R+LDIEFNFT+ Sbjct: 52 GRGKP-----KREFERKSGDDKT-GVKAVDKRDGGGSHNWGTMEDEMKAEEDKANVSASEDPNNQEESARPGSD-EDDEEANKNKVKTLTLEEWKAQQKEKREVPTYNTRKAGEG-SEIDPKWKKTYAYKKEKETH-DDDEEDDHELYPQRVNRQKRILDIEFNFTS 209
BLAST of vasa intronic gene vs. SwissProt
Match: gi|52783213|sp|Q9CY58.2|PAIRB_MOUSE (RecName: Full=Plasminogen activator inhibitor 1 RNA-binding protein; AltName: Full=PAI1 RNA-binding protein 1; Short=PAI-RBP1; AltName: Full=SERPINE1 mRNA-binding protein 1) HSP 1 Score: 85.5001 bits (210), Expect = 5.247e-17 Identity = 68/174 (39.08%), Postives = 89/174 (51.15%), Query Frame = 0 Query: 251 GKRDFDRKSGDDRTS-----GVKHVDKREGGGSHNWGTFEDEI--------KAVD------DKNNVSTEENP--AEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEF 403 GKR+FDR SG DR+S G+KH DKR G GSHNWGT +DE+ K + D++NV TEE P E V + + E + +EE PK MTLDEW+A Q+ + FN+RK EGA + WKK + K K ED + + N L+I F Sbjct: 189 GKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNV-TEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA---DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 358
BLAST of vasa intronic gene vs. SwissProt
Match: gi|52783155|sp|Q6AXS5.2|PAIRB_RAT (RecName: Full=Plasminogen activator inhibitor 1 RNA-binding protein; AltName: Full=PAI1 RNA-binding protein 1; Short=PAI-RBP1; AltName: Full=RDA288; AltName: Full=SERPINE1 mRNA-binding protein 1) HSP 1 Score: 84.3445 bits (207), Expect = 1.399e-16 Identity = 65/173 (37.57%), Postives = 85/173 (49.13%), Query Frame = 0 Query: 251 GKRDFDRKSGDDRTS-----GVKHVDKREGGGSHNWGTFEDEIK-------------AVDDKNNVSTEENP--AEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEF 403 GKR+FDR SG DR+S G+KH DKR G GSHNWGT +DE+ D + + TEE P E V + + E + +EE PK MTLDEW+A Q+ + FN+RK EGA + WKK + K K ED + + N L+I F Sbjct: 189 GKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA---DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 358
BLAST of vasa intronic gene vs. SwissProt
Match: gi|52783206|sp|Q8NC51.2|PAIRB_HUMAN (RecName: Full=Plasminogen activator inhibitor 1 RNA-binding protein; AltName: Full=PAI1 RNA-binding protein 1; Short=PAI-RBP1; AltName: Full=SERPINE1 mRNA-binding protein 1) HSP 1 Score: 83.5741 bits (205), Expect = 2.588e-16 Identity = 67/175 (38.29%), Postives = 88/175 (50.29%), Query Frame = 0 Query: 251 GKRDFDRKSGDDRTS-----GVKHVDKREGGGSHNWGTFEDEI--------KAVD------DKNNVSTEENP---AEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEF 403 GKR+FDR SG DR+S G+KH DKR G GSHNWGT +DE+ K + D++NV TEE P V + + E + +EE PK MTLDEW+A Q+ + FN+RK EGA + WKK + K K ED + + N L+I F Sbjct: 189 GKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNV-TEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA---DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 359
BLAST of vasa intronic gene vs. nr
Match: gi|914577589|gb|KOB79256.1| (Vasa intronic protein [Operophtera brumata]) HSP 1 Score: 151.369 bits (381), Expect = 4.470e-38 Identity = 140/384 (36.46%), Postives = 183/384 (47.66%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGEESEQALLEASLAAQKIVDNNLKAQAAAAAVPVVT---------KGPKDAKPAATTDPK-------KAPAHMNPKNNNLNHRRDDKENRRFEGKRVLDARKAPDAPRENNEERTNRRNNRDAPDGERRNQFDGE----------------RRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTE-----ENPAEAGVERSGDDNAED--QIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEK----ESAMDDEDEEDQELYPQRVNRQRRVLDIEFNF 405 ME++YGVG+ NRYALFLD+E + + ++AS A+++ A+ P V KG K+ + + D K K PA +NN R + V AP PR + ER R P+ ERRN FD R P DS +G RG PR P GKR+FDR+SG D+T GVK VDKREGGG HNWGT +D+I DD N +E E PA +GD A + P EEEP+ +TLDE++A ++A++ P++NLRKAGEG T+ WKK +K+K E D +DE D YPQRV RQ+RVL IEF F Sbjct: 1 MENSYGVGVVNRYALFLDDESDPLD--AIKASEQAKELKKKTKDAEKENKGKPEVKPKGPTAPARKGIKETQNVKSQDIKSGEQQKAKGPARPVDRNNAERPPPRRPREDRPQNGAVDSKDGAPRPPRRDFAERGGERR----PNFERRN-FDNPEGGERRGPRPPREPRAERDPRDSRDGPRG-------------------PRP-------PYDNRGKREFDRRSGSDKT-GVKPVDKREGGGPHNWGTIKDDI---DDLNKTGSEGEPVEEKPAAEASVGAGDGVAPEPPTAPAEEEPRELTLDEYKALRNAQRTQPQYNLRKAGEGEDLTQ--WKKLVPLEKKKEVTGEEGEDTDDEYDLADYPQRVGRQKRVLGIEFTF 345
BLAST of vasa intronic gene vs. nr
Match: gi|1059387694|ref|XP_017769048.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like, partial [Nicrophorus vespilloides]) HSP 1 Score: 141.354 bits (355), Expect = 1.011e-34 Identity = 132/364 (36.26%), Postives = 188/364 (51.65%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGEESEQALL---EASLAAQ-KIVDNNLKAQAAAAAVPVVTKGPKDAKPAATTDPKKAPAHMNPKNNNLNHRR--DDKENRRF------EGKRVLDARKAPDAPRENNEERTNRRNNR-DAPDGERRNQFDGERRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEE-----NPAEAGV--ERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQEL--YPQRVNRQRRVLDIEFNFT 406 ME+ YG+G NRY+LFLD E + E + E L + K+V+ K + A A T+ PK P KA + ++ LNH+R D+K + F + + R D P N E NNR D P R G +D+ RGR GS+ A GRGG R GKR+F+R+SG D+T GVK +DKR+GGG+HNWG+ +D I+ D + TE+ AE + E+ +N + +P EEEPK +TLDEW+A Q A + P +NLRKAGEG ++ WKK Y K+K+ ++ D+E+ + YPQRV RQ+RV+ I+F+F+ Sbjct: 1 MENVYGIGTANRYSLFLDNETDPLETLQIKEQEKELKRKTKVVEKENKGKPEAPAKGKPTQPPKKIIKDV---PHKAQDNKR-EDGKLNHQRSTDNKTEKTFNKFNNENREERNNRRNREDRPFNGNFE-----NNREDRP----------RREGDFDNR---RGRAVGSKTA-----------------GRGGVAPRRGKREFERQSGSDKT-GVKPIDKRDGGGAHNWGSHKDVIEEADANKSTETEQVWSENEKAETSINAEQKETENETENVPVEEEPKELTLDEWKA-QRAGRQKPTYNLRKAGEGEDPSQ--WKKMYELSKKKDGEEEETDDEEYDTSEYPQRVGRQKRVVGIDFHFS 321
BLAST of vasa intronic gene vs. nr
Match: gi|1344765879|ref|XP_023935179.1| (plasminogen activator inhibitor 1 RNA-binding protein-like [Bicyclus anynana] >gi|1063195365|gb|AON96563.1| plasminogen activator inhibitor 1 RNA-binding protein-like protein [Bicyclus anynana]) HSP 1 Score: 142.124 bits (357), Expect = 1.063e-34 Identity = 131/361 (36.29%), Postives = 180/361 (49.86%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGE--------ESEQALLEASLAAQKIVDNNLKAQAAAAAVPVVTKGPKDAKPAATTDPKKAPAHMN---PKNNNLNHRRDDKENRRFEGKR-VLDARKAPDAPRENNEERTNRRNNRDAPDGERRNQFDGERRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTE-----ENPAEAGVERSGDD-NAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAY--KKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNF 405 ME++YGVG+ NRYALFLD+E + E + L + + A+K L+ + +V VV KG K+ + + + K N P+ + N R R + ++ ++ PR E +RR P+ ERRN D G R G RG PR GRG KR+FDR+SG D+T GVK VDKREG G HNWGT +D++ D+ N +E E P +A G E P EEEP+ +TLDE++A ++A++ AP++NLRKAGEG ++ WK KKE E D++DE D YPQRV RQ+RVL IEF F Sbjct: 1 MENSYGVGVVNRYALFLDDESDPLDAIKAREQAKELKKKTKDAEKENKGKLEVKPKGPSV-VVRKGIKETQNVKSQENKTGDQQKNKGPPRTTDRNAERPPPRRREERPQNGAVEGKEGARPPRR---EFGDRR-----PNFERRNFNDNPEGGERRGPRPPREPRDGQRG------------PRPGYDGRG-------KREFDRRSGSDKT-GVKPVDKREGAGPHNWGTLKDDL---DEMNKTGSEGEAPEEKPVDAAAAGDGPQPEPERAPPAEEEPRELTLDEYKALRNAQRTAPQYNLRKAGEGEDLSQ--WKNLVQMEKKKEGEHDSDEDDEYDIADYPQRVGRQKRVLGIEFTF 327
BLAST of vasa intronic gene vs. nr
Match: gi|1059402615|ref|XP_017774220.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like isoform X2 [Nicrophorus vespilloides]) HSP 1 Score: 141.354 bits (355), Expect = 3.760e-34 Identity = 132/364 (36.26%), Postives = 188/364 (51.65%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGEESEQALL---EASLAAQ-KIVDNNLKAQAAAAAVPVVTKGPKDAKPAATTDPKKAPAHMNPKNNNLNHRR--DDKENRRF------EGKRVLDARKAPDAPRENNEERTNRRNNR-DAPDGERRNQFDGERRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEE-----NPAEAGV--ERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQEL--YPQRVNRQRRVLDIEFNFT 406 ME+ YG+G NRY+LFLD E + E + E L + K+V+ K + A A T+ PK P KA + ++ LNH+R D+K + F + + R D P N E NNR D P R G +D+ RGR GS+ A GRGG R GKR+F+R+SG D+T GVK +DKR+GGG+HNWG+ +D I+ D + TE+ AE + E+ +N + +P EEEPK +TLDEW+A Q A + P +NLRKAGEG ++ WKK Y K+K+ ++ D+E+ + YPQRV RQ+RV+ I+F+F+ Sbjct: 1 MENVYGIGTANRYSLFLDNETDPLETLQIKEQEKELKRKTKVVEKENKGKPEAPAKGKPTQPPKKIIKDV---PHKAQDNKR-EDGKLNHQRSTDNKTEKTFNKFNNENREERNNRRNREDRPFNGNFE-----NNREDRP----------RREGDFDNR---RGRAVGSKTA-----------------GRGGVAPRRGKREFERQSGSDKT-GVKPIDKRDGGGAHNWGSHKDVIEEADANKSTETEQVWSENEKAETSINAEQKETENETENVPVEEEPKELTLDEWKA-QRAGRQKPTYNLRKAGEGEDPSQ--WKKMYELSKKKDGEEEETDDEEYDTSEYPQRVGRQKRVVGIDFHFS 321
BLAST of vasa intronic gene vs. nr
Match: gi|1048010958|ref|XP_017466331.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Rhagoletis zephyria]) HSP 1 Score: 141.354 bits (355), Expect = 4.479e-34 Identity = 81/161 (50.31%), Postives = 107/161 (66.46%), Query Frame = 0 Query: 247 GGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEENPAEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAY--KKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNF 405 G RGGKR+FDR+SG D+T GVK +DKR+G G+HNWG+ ++ A+DD N E E SG++ A DQ P EEE K +TLDEW+A Q ++ P FN+RKAGEG T+ WKK K+K++ ++E E D +YPQRV RQ+RVLDI+FNF Sbjct: 191 GNRGGKREFDRQSGSDKT-GVKAIDKRDGAGAHNWGSVKE---AIDDVNKSDVEAGNVTDKAEESGNEQA-DQAPVEEETKELTLDEWKA-QKQQRVKPTFNIRKAGEGEDTTQ--WKKMVVLNNNKKKDNESEEELEYDPAMYPQRVGRQQRVLDIQFNF 343
BLAST of vasa intronic gene vs. nr
Match: gi|1059402613|ref|XP_017774219.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like isoform X1 [Nicrophorus vespilloides]) HSP 1 Score: 140.584 bits (353), Expect = 8.142e-34 Identity = 132/367 (35.97%), Postives = 188/367 (51.23%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGEESEQALL---EASLAAQ-KIVDNNLKAQAAAAAVPVVTKGPKDAKPAATTDPKKAPAHMNPKNNNLNHRR--DDKENRRF------EGKRVLDARKAPDAPRENNEERTNRRNNR-DAPDGERRNQFDGERRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSG---VKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEE-----NPAEAGV--ERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQEL--YPQRVNRQRRVLDIEFNFT 406 ME+ YG+G NRY+LFLD E + E + E L + K+V+ K + A A T+ PK P KA + ++ LNH+R D+K + F + + R D P N E NNR D P R G +D+ RGR GS+ A GRGG R GKR+F+R+SG D+T G VK +DKR+GGG+HNWG+ +D I+ D + TE+ AE + E+ +N + +P EEEPK +TLDEW+A Q A + P +NLRKAGEG ++ WKK Y K+K+ ++ D+E+ + YPQRV RQ+RV+ I+F+F+ Sbjct: 1 MENVYGIGTANRYSLFLDNETDPLETLQIKEQEKELKRKTKVVEKENKGKPEAPAKGKPTQPPKKIIKDV---PHKAQDNKR-EDGKLNHQRSTDNKTEKTFNKFNNENREERNNRRNREDRPFNGNFE-----NNREDRP----------RREGDFDNR---RGRAVGSKTA-----------------GRGGVAPRRGKREFERQSGSDKTHGYRGVKPIDKRDGGGAHNWGSHKDVIEEADANKSTETEQVWSENEKAETSINAEQKETENETENVPVEEEPKELTLDEWKA-QRAGRQKPTYNLRKAGEGEDPSQ--WKKMYELSKKKDGEEEETDDEEYDTSEYPQRVGRQKRVVGIDFHFS 325
BLAST of vasa intronic gene vs. nr
Match: gi|1036945647|ref|XP_017005293.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Drosophila takahashii]) HSP 1 Score: 139.043 bits (349), Expect = 3.955e-33 Identity = 87/183 (47.54%), Postives = 116/183 (63.39%), Query Frame = 0 Query: 233 RGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEENPAEAGVERSGDDNAEDQIPREE-EPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNFTTEQGSRGG 414 RG PR GG + GKR+FDR+SG D+T GVK +DKREGGG+HNWG+ + +I +D E +P + + + +A+ +P EE E K MTLDEW+A +D ++ P +NLRKAGEGAA A WKK K+KES +DE E D LYPQRV R +R++DI+FNF G +GG Sbjct: 145 RGPPRARTGGE-----KFGKREFDRQSGSDKT-GVKSIDKREGGGAHNWGSPKQDI---EDLKTTGGESSPQAEKEDSANEQSADPAVPAEEDESKLMTLDEWKALRD-QRAKPNYNLRKAGEGAADN-AEWKKMVVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFN--DGRKGG 314
BLAST of vasa intronic gene vs. nr
Match: gi|1321321919|ref|XP_023303429.1| (plasminogen activator inhibitor 1 RNA-binding protein [Lucilia cuprina] >gi|906472339|gb|KNC32489.1| hypothetical protein FF38_00488 [Lucilia cuprina]) HSP 1 Score: 138.272 bits (347), Expect = 8.206e-33 Identity = 90/184 (48.91%), Postives = 118/184 (64.13%), Query Frame = 0 Query: 233 RGGPRGNGGGRGGPGGRGG--KRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKN-NVSTEENPAEAGV--ERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTY------AYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNF 405 RGG R + R GG KR+FDR+SG D+T GVK VDKREG G+HNWG+ +D I+ ++ N NV N A AG E SG++ A +Q P EEE K +TLDEW+A Q ++ P+FN+RKAGEG T+ WKK A K++K + ++E E D +YPQRV RQ+RVLDI+FNF Sbjct: 173 RGGDRADRPPRSNRNFEGGNRKREFDRQSGSDKT-GVKAVDKREGAGAHNWGSVKDTIEEGNNTNKNVEENGNAANAGEKNEESGNEQATEQTPVEEEVKELTLDEWKAQQ-QQRAKPQFNIRKAGEGEDTTK--WKKMIVLNNSKATKEKKGTESEEELEFDPAMYPQRVGRQQRVLDIQFNF 352
BLAST of vasa intronic gene vs. nr
Match: gi|914096868|ref|NP_001298538.1| (plasminogen activator inhibitor 1 RNA-binding protein-like [Papilio polytes] >gi|389610949|dbj|BAM19085.1| vasa intronic gene [Papilio polytes]) HSP 1 Score: 137.117 bits (344), Expect = 8.890e-33 Identity = 135/364 (37.09%), Postives = 182/364 (50.00%), Query Frame = 0 Query: 65 MESTYGVGINNRYALFLDEEGE------ESEQALLEASLAAQKIVDNNLKAQAAAAAVPVVT-KGPKDAKPAATTDPK-------KAPAHM--NPKNNNLNHRRDDK-ENRRFEGKRVLDARKAPDAPRENNEERTNRRNNRDAPDGERRNQFDGERRGPYDSSEGGRGRGRGSRGAPGTGRGMERGGPRGNGGGRGGPGGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFED---EIKAVDDKNNVSTEENPAEAGVERSGDDNAEDQIPREEEPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQEL--YPQRVNRQRRVLDIEFNFT 406 ME++YGVGI NRYALFLD+E + EQA + +N K + + VV KG K+ + + + K K PA P + RR+++ +N EGK V AP PR ER P ERRN D G R G RG PR RG KR+FDR+SG D+T GVK VDKREGGG HNWGT +D E++ + E+ P A +AE +P EEEP+ +TLDE++A ++A++ AP++NLRKAGEG ++ WK +K+KE DDE +E+ ++ YPQRV RQ+RVL IEF F+ Sbjct: 1 MENSYGVGIVNRYALFLDDETDPLDALKAREQAKELKKKTKEAEKENKGKPEIKPKSGSVVARKGIKETQNVKSQENKNGDQQKSKGPARTAERPVERPPSKRREERPQNGAVEGKEV-----APRPPRREFGERR--------PYIERRNFSDNPEGGERRGPRPPREPREGQRG------------PRPAYDSRG-------KREFDRRSGSDKT-GVKPVDKREGGGPHNWGTIKDDLDELQKTGSEGETVEEKVPDVAAAGDGQQPDAERTVPAEEEPRELTLDEYKALRNAQRMAPQYNLRKAGEGEDLSQ--WKNLVMLEKKKEGGEDDESDEEYDMADYPQRVGRQKRVLGIEFTFS 329
BLAST of vasa intronic gene vs. nr
Match: gi|1037035762|ref|XP_017079948.1| (PREDICTED: translation initiation factor IF-2 [Drosophila eugracilis]) HSP 1 Score: 136.732 bits (343), Expect = 1.781e-32 Identity = 85/170 (50.00%), Postives = 114/170 (67.06%), Query Frame = 0 Query: 247 GGRGGKRDFDRKSGDDRTSGVKHVDKREGGGSHNWGTFEDEIKAVDDKNNVSTEENPAEAGVERSGDDNAED-QIPREE-EPKTMTLDEWRASQDAKKNAPRFNLRKAGEGAAATEANWKKTYAYKKEKESAMDDEDEEDQELYPQRVNRQRRVLDIEFNFTTEQGSRGG 414 G + GKR+FDR+SG D+T GVK +DKREGGG+HNWG+ + +I+ ++ T E+ +A E S ++ + D IP EE E K MTLDEW+A +D ++ P +NLRKAGEGAA A WKK K+KES +DE E D LYPQRV R +R++DI+FNF G +GG Sbjct: 138 GEKFGKREFDRQSGSDKT-GVKSIDKREGGGAHNWGSPKQDIE------DLKTGESSPQAEKEDSANEQSADPAIPAEEDESKQMTLDEWKALRD-QRAKPNYNLRKAGEGAADN-AEWKKMVVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFN--DGRKGG 296 The following BLAST results are available for this feature:
BLAST of vasa intronic gene vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of vasa intronic gene vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of vasa intronic gene vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1628_size33005:30000..32994+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1628_size33005-snap-gene-0.7 ID=maker-scaffold1628_size33005-snap-gene-0.7|Name=vasa intronic gene|organism=Tigriopus kingsejongensis|type=gene|length=2995bp|location=Sequence derived from alignment at scaffold1628_size33005:30000..32994+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'vasa intronic gene' has the following synonyms
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