cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a, maker-scaffold170_size291898-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Namecop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a
Unique Namemaker-scaffold170_size291898-snap-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. L. salmonis genes
Match: EMLSAG00000012503 (supercontig:LSalAtl2s:LSalAtl2s921:123541:125055:-1 gene:EMLSAG00000012503 transcript:EMLSAT00000012503 description:"maker-LSalAtl2s921-augustus-gene-1.56")

HSP 1 Score: 144.436 bits (363), Expect = 2.763e-41
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = 0 
Query:   16 ADMASLRQQLGVLSTGASGVAHRDLAERYRQILE-VILTLGED----------------------------QLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A  ASL+ QL  L+T  SG  HRDL ++YR +LE V+LTLGE                             +LV+G+K FIE IV+E VS+ ISRQLL++    HLT M DSVSKAVSH+TL ++QPR+ISFEDQ+ A+RQHL+DIYERE+NWR   + L
Sbjct:    2 AXAASLKAQLQQLAT-PSGSHHRDLCDKYRSVLEKVVLTLGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVDGLKVFIECIVHEGVSMXISRQLLSE-XGTHLTSMQDSVSKAVSHHTLNVIQPRIISFEDQISAIRQHLADIYEREQNWREAADVL 159
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|55976432|sp|Q6P0H6.1|CSN4_DANRE (RecName: Full=COP9 signalosome complex subunit 4; Short=Signalosome subunit 4)

HSP 1 Score: 138.272 bits (347), Expect = 1.116e-37
Identity = 72/130 (55.38%), Postives = 97/130 (74.62%), Query Frame = 0 
Query:   18 MAS-LRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            MAS +RQ+L  L   +SG +H+DLA +YRQILE  L   + + +E +KAF+EA+VNENVSLVISRQLL D  A HL  + D ++K V H+TLE +QPRVISFE+QV ++RQHL+ IYE++E+WR   + L
Sbjct:    1 MASGVRQELAQL-MNSSG-SHKDLAGKYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCA-HLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVL 127
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|55976221|sp|O88544.1|CSN4_MOUSE (RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4; AltName: Full=JAB1-containing signalosome subunit 4)

HSP 1 Score: 137.887 bits (346), Expect = 1.376e-37
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A++RQ L  L   +SG +H+DLA +YRQILE  + L   + +E +KAF+EA+VNENVSLVISRQLL D    HL  + DS +K V H+TLE +QPRVISFE+QV ++RQHL+ IYE+EE+WR   + L
Sbjct:    3 AAVRQDLAQL-MNSSG-SHKDLAGKYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDF-CTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVL 127
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|55976582|sp|Q9BT78.1|CSN4_HUMAN (RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4; AltName: Full=JAB1-containing signalosome subunit 4 >gi|75076008|sp|Q4R5E6.1|CSN4_MACFA RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4 >gi|182639228|sp|A7Y521.1|CSN4_PIG RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4)

HSP 1 Score: 137.117 bits (344), Expect = 2.804e-37
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A++RQ L  L   +SG +H+DLA +YRQILE  + L   + +E +KAF+EA+VNENVSLVISRQLL D    HL  + DS +K + H+TLE +QPRVISFE+QV ++RQHL+ IYE+EE+WR   + L
Sbjct:    3 AAVRQDLAQL-MNSSG-SHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFC-THLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVL 127
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|75041201|sp|Q5R648.1|CSN4_PONAB (RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4)

HSP 1 Score: 136.732 bits (343), Expect = 3.838e-37
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A++RQ L  L   +SG +H+DLA +YRQILE  + L   + +E +KAF+EA+VNENVSLVISRQLL D    HL  + DS +K + H+TLE +QPRVISFE+QV ++RQHL+ IYE+EE+WR   + L
Sbjct:    3 AAVRQDLAQL-MNSSG-SHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDF-CTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASVRQHLASIYEKEEDWRNAAQVL 127
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|122145075|sp|Q3SZA0.1|CSN4_BOVIN (RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4)

HSP 1 Score: 135.961 bits (341), Expect = 8.152e-37
Identity = 69/128 (53.91%), Postives = 94/128 (73.44%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A++RQ L  L   +SG +H+DLA +YRQILE  + L   + +E +KAF+E++VNENVSLVISRQLL D    HL  + DS +K + H+TLE +QPRVISFE+QV ++RQHL+ IYE+EE+WR   + L
Sbjct:    3 AAVRQDLAQL-MNSSG-SHKDLAGKYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFC-THLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVL 127
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|56405004|sp|Q68FS2.1|CSN4_RAT (RecName: Full=COP9 signalosome complex subunit 4; Short=SGN4; Short=Signalosome subunit 4; AltName: Full=JAB1-containing signalosome subunit 4)

HSP 1 Score: 135.191 bits (339), Expect = 1.464e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A++RQ L  L   +SG +H+DLA +YRQILE  + L   + +E +KAF+EA+VNENVSLVISRQLL D    HL  + DS +K V H+TLE VQPRVISFE+QV ++RQ L+ IYE+EE+WR   + L
Sbjct:    3 AAVRQDLAQL-MNSSG-SHKDLAGKYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDF-CTHLPNLPDSTAKEVYHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVL 127
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|55976623|sp|Q9V345.1|CSN4_DROME (RecName: Full=COP9 signalosome complex subunit 4; Short=Dch4; Short=Signalosome subunit 4)

HSP 1 Score: 125.561 bits (314), Expect = 5.564e-33
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = 0 
Query:   19 ASLRQQL-GVLS-TGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            A+LR QL G+++ TG     H+D A++YRQ+L+ +LT    +L++G++ F+EAIVNE+VSLVISRQ+L D V + L+++ D +SK +SH+TLE V PRVISFE+QV  +R HL++IYER + WR
Sbjct:   10 AALRSQLMGLINFTGT----HKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILND-VGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWR 128
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|74850479|sp|Q54B82.1|CSN4_DICDI (RecName: Full=COP9 signalosome complex subunit 4; Short=Signalosome subunit 4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.181e-15
Identity = 43/130 (33.08%), Postives = 76/130 (58.46%), Query Frame = 0 
Query:   17 DMASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            D+ +L+Q   +L   ++   H+   E+Y+ IL+    L E + V  +K FI  + +E+  LVISR +L    ++H T + + +   +  + L+ +Q RV++FE+QV  +R +L+ +YER+ENWR    CL
Sbjct:    2 DVNNLKQ---ILEETSALSDHKTKTEKYKSILQ---QLVESKQVAPLKVFITHLTDESTPLVISRTILLSFTSSHKT-LPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCL 124
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Match: gi|55976535|sp|Q8L5U0.2|CSN4_ARATH (RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSCA 4)

HSP 1 Score: 68.5514 bits (166), Expect = 1.782e-12
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 0 
Query:   30 TGASGVA-HRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            T AS +   R   E+Y+ IL  +L+   + L++  + FI+ I++++V LV+SRQLL    A  L ++     K ++ +TL  +QPRV+SFE+Q   +R+ L+ +YE E+ W    + L
Sbjct:    6 TNASAIGDQRQKIEQYKLILSSVLS--SNDLLQA-QRFIDHILSDDVPLVVSRQLLQSF-AQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQML 119
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|669193641|gb|AII16526.1| (COP9 signalosome complex subunit 4, partial [Paracyclopina nana])

HSP 1 Score: 173.326 bits (438), Expect = 1.218e-48
Identity = 86/128 (67.19%), Postives = 107/128 (83.59%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A  + QL  +ST A G +HRDLA++Y+ +L  IL LGED+LV+G+KAFIEAIVNENVSLVISRQLL++ VA  L ++ DS+SKAVSH+TLE+VQPRVISFEDQVGA+RQHL+DIYERE+NWR   + L
Sbjct:    3 AQYKAQLAQMSTSAGG-SHRDLADKYKIVLTSILQLGEDELVDGLKAFIEAIVNENVSLVISRQLLSE-VAAELVKIEDSISKAVSHFTLEVVQPRVISFEDQVGAIRQHLADIYEREQNWRQAAQVL 128
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|225712246|gb|ACO11969.1| (COP9 signalosome complex subunit 4 [Lepeophtheirus salmonis])

HSP 1 Score: 166.392 bits (420), Expect = 5.680e-46
Identity = 84/132 (63.64%), Postives = 106/132 (80.30%), Query Frame = 0 
Query:   16 ADMASLRQQLGVLSTGASGVAHRDLAERYRQILE-VILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            A  ASL+ QL  L+T  SG  HRDL ++YR +LE V+LTLGED+LV+G+K FIE IV+E VS+VISRQLL++ V  HLT M DSVSKAVSH+TL ++QPR+ISFEDQ+ A+RQHL+DIYERE+NWR   + L
Sbjct:    2 ATAASLKAQLQQLAT-PSGSHHRDLCDKYRSVLEKVVLTLGEDELVDGLKVFIECIVHEGVSMVISRQLLSE-VGTHLTSMQDSVSKAVSHHTLNVIQPRIISFEDQISAIRQHLADIYEREQNWREAADVL 131
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|1325279850|ref|XP_023324585.1| (COP9 signalosome complex subunit 4-like [Eurytemora affinis])

HSP 1 Score: 162.54 bits (410), Expect = 2.018e-44
Identity = 79/129 (61.24%), Postives = 105/129 (81.40%), Query Frame = 0 
Query:   18 MASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWRXHPECL 146
            M+  R QL  L+  ++  +H+D++E++R+IL+ IL LGED+LVEG+KAFIEAIVNENVSLVISRQLL + +   L ++ D VSKAVSHYTL+IV PRVISFEDQVG++RQHL+DI+ERE+NW+   + L
Sbjct:    1 MSQYRAQL--LNLASTNGSHKDISEKFREILDNILNLGEDELVEGLKAFIEAIVNENVSLVISRQLLTE-ICTILVKLEDCVSKAVSHYTLDIVAPRVISFEDQVGSIRQHLADIFEREQNWKQAAQTL 126
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|1339091598|ref|XP_023706992.1| (COP9 signalosome complex subunit 4 [Cryptotermes secundus] >gi|1330916538|gb|PNF34317.1| COP9 signalosome complex subunit 4 [Cryptotermes secundus])

HSP 1 Score: 158.688 bits (400), Expect = 5.395e-43
Identity = 80/123 (65.04%), Postives = 100/123 (81.30%), Query Frame = 0 
Query:   18 MASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            ++S+RQQL VL  G SG +H+D AE+YR IL+ ILT   D L E +K FIEAIVNENVSLVISRQ+L D V+  LT ++D +SKAVSHYTL+ VQPRVISFE+QV ++RQHL+DIYERE++WR
Sbjct:    5 VSSVRQQLAVL--GNSGGSHKDQAEKYRSILDAILTSSGDDLAETLKVFIEAIVNENVSLVISRQILTD-VSTQLTVLSDPISKAVSHYTLDKVQPRVISFEEQVASIRQHLADIYEREQSWR 124
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|1227981457|ref|XP_021922329.1| (COP9 signalosome complex subunit 4 [Zootermopsis nevadensis])

HSP 1 Score: 158.303 bits (399), Expect = 8.598e-43
Identity = 79/124 (63.71%), Postives = 101/124 (81.45%), Query Frame = 0 
Query:   17 DMASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            ++ S++QQL VL+T   G +H+D AE+YR IL+VILT   D L E +K FIEAIVNENVSLVISRQ+L D V+  LT + D++SKAVSHYTL+ VQPRVISFE+QV ++RQHL+DIYERE++WR
Sbjct:    4 NVMSVKQQLAVLATA--GGSHKDQAEKYRSILDVILTSSGDDLAETLKVFIEAIVNENVSLVISRQILTD-VSTQLTVLPDAISKAVSHYTLDKVQPRVISFEEQVASIRQHLADIYEREQSWR 124
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|646714117|gb|KDR18210.1| (COP9 signalosome complex subunit 4 [Zootermopsis nevadensis])

HSP 1 Score: 157.147 bits (396), Expect = 2.981e-42
Identity = 79/121 (65.29%), Postives = 99/121 (81.82%), Query Frame = 0 
Query:   20 SLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            S++QQL VL+T   G +H+D AE+YR IL+VILT   D L E +K FIEAIVNENVSLVISRQ+L D V+  LT + D++SKAVSHYTL+ VQPRVISFE+QV ++RQHL+DIYERE++WR
Sbjct:    2 SVKQQLAVLATA--GGSHKDQAEKYRSILDVILTSSGDDLAETLKVFIEAIVNENVSLVISRQILTD-VSTQLTVLPDAISKAVSHYTLDKVQPRVISFEEQVASIRQHLADIYEREQSWR 119
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|926607528|ref|XP_013773047.1| (COP9 signalosome complex subunit 4-like [Limulus polyphemus])

HSP 1 Score: 153.295 bits (386), Expect = 5.293e-41
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 0 
Query:   19 ASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            +S RQQL  LS+   G +H+D A+RYR + E IL     +LV+G+KAF+EAIVNENVSLVISRQLL D V NHLT++ D +SKAVSH+TL+ VQPRV+SFE+QV ++RQHL+DIYE+E++WR
Sbjct:    3 SSARQQLITLSS--LGGSHKDQADRYRAVFESILKSSGQELVDGLKAFVEAIVNENVSLVISRQLLTD-VGNHLTKLPDDISKAVSHFTLDRVQPRVVSFEEQVASIRQHLADIYEKEQSWR 121
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|585712386|ref|XP_006824908.1| (PREDICTED: LOW QUALITY PROTEIN: COP9 signalosome complex subunit 4-like [Saccoglossus kowalevskii])

HSP 1 Score: 152.14 bits (383), Expect = 1.726e-40
Identity = 71/123 (57.72%), Postives = 100/123 (81.30%), Query Frame = 0 
Query:   18 MASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            MA ++QQL  L++   G  H+D+A++YR+ILE IL   + +L++G+KAF+EA+VNENVSLVISRQ+L D   N++ ++AD +SK VSH+TLE VQPRVISFE+QV ++RQHL++IYERE+ WR
Sbjct:    1 MADVKQQLAALASA--GGPHKDVADKYRKILEDILKXTDKKLIDGLKAFVEAMVNENVSLVISRQILTDF-CNYMAKLADPISKEVSHFTLEKVQPRVISFEEQVASVRQHLAEIYEREQRWR 120
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|1000731757|ref|XP_015588268.1| (PREDICTED: COP9 signalosome complex subunit 4 [Cephus cinctus])

HSP 1 Score: 150.984 bits (380), Expect = 4.249e-40
Identity = 77/123 (62.60%), Postives = 98/123 (79.67%), Query Frame = 0 
Query:   18 MASLRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            ++S+RQQL  L    SG +H+D AE+YR IL+VILT   ++L++ +K FIEAIVNENVSLVISRQ+L D V+N L  + D +SKAVSHYTL+ VQPRVISFE+QV  +RQHL+DIYER +NWR
Sbjct:    5 VSSVRQQLTNL--AHSGGSHKDQAEKYRAILDVILTSSGEELIDALKIFIEAIVNENVSLVISRQVLTD-VSNQLLVLPDEISKAVSHYTLDKVQPRVISFEEQVAGIRQHLADIYERNQNWR 124
[Close]
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Match: gi|345480212|ref|XP_001607868.2| (PREDICTED: COP9 signalosome complex subunit 4 [Nasonia vitripennis])

HSP 1 Score: 150.599 bits (379), Expect = 6.466e-40
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0 
Query:   18 MAS-LRQQLGVLSTGASGVAHRDLAERYRQILEVILTLGEDQLVEGIKAFIEAIVNENVSLVISRQLLADLVANHLTQMADSVSKAVSHYTLEIVQPRVISFEDQVGALRQHLSDIYEREENWR 140
            MAS +RQQL  L    SG +H+D AE+YR  L+ ILT   D+L E +K FIEAIVNENVSLVISRQ+L D V+N L  + D +SKAVSHYTL+ VQPRVISFE+QV ++RQHL+DIYER +NWR
Sbjct:    5 MASAMRQQLANL--AHSGGSHKDQAEKYRSFLDAILTSSGDELAETLKVFIEAIVNENVSLVISRQVLTD-VSNRLQVLPDEISKAVSHYTLDKVQPRVISFEEQVASIRQHLADIYERNQNWR 125
The following BLAST results are available for this feature:
BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000125032.763e-4150.63supercontig:LSalAtl2s:LSalAtl2s921:123541:125055:-... [more]
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
gi|55976432|sp|Q6P0H6.1|CSN4_DANRE1.116e-3755.38RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|55976221|sp|O88544.1|CSN4_MOUSE1.376e-3755.47RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|55976582|sp|Q9BT78.1|CSN4_HUMAN2.804e-3754.69RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|75041201|sp|Q5R648.1|CSN4_PONAB3.838e-3754.69RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|122145075|sp|Q3SZA0.1|CSN4_BOVIN8.152e-3753.91RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|56405004|sp|Q68FS2.1|CSN4_RAT1.464e-3655.47RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|55976623|sp|Q9V345.1|CSN4_DROME5.564e-3352.42RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|74850479|sp|Q54B82.1|CSN4_DICDI1.181e-1533.08RecName: Full=COP9 signalosome complex subunit 4; ... [more]
gi|55976535|sp|Q8L5U0.2|CSN4_ARATH1.782e-1234.75RecName: Full=COP9 signalosome complex subunit 4; ... [more]
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BLAST of cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|669193641|gb|AII16526.1|1.218e-4867.19COP9 signalosome complex subunit 4, partial [Parac... [more]
gi|225712246|gb|ACO11969.1|5.680e-4663.64COP9 signalosome complex subunit 4 [Lepeophtheirus... [more]
gi|1325279850|ref|XP_023324585.1|2.018e-4461.24COP9 signalosome complex subunit 4-like [Eurytemor... [more]
gi|1339091598|ref|XP_023706992.1|5.395e-4365.04COP9 signalosome complex subunit 4 [Cryptotermes s... [more]
gi|1227981457|ref|XP_021922329.1|8.598e-4363.71COP9 signalosome complex subunit 4 [Zootermopsis n... [more]
gi|646714117|gb|KDR18210.1|2.981e-4265.29COP9 signalosome complex subunit 4 [Zootermopsis n... [more]
gi|926607528|ref|XP_013773047.1|5.293e-4162.30COP9 signalosome complex subunit 4-like [Limulus p... [more]
gi|585712386|ref|XP_006824908.1|1.726e-4057.72PREDICTED: LOW QUALITY PROTEIN: COP9 signalosome c... [more]
gi|1000731757|ref|XP_015588268.1|4.249e-4062.60PREDICTED: COP9 signalosome complex subunit 4 [Cep... [more]
gi|345480212|ref|XP_001607868.2|6.466e-4063.71PREDICTED: COP9 signalosome complex subunit 4 [Nas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold170_size291898supercontigscaffold170_size291898:70111..72224 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:nucleolus
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold170_size291898-snap-gene-0.17-mRNA-1maker-scaffold170_size291898-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold170_size291898:70111..72224-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold170_size291898-snap-gene-0.17 ID=maker-scaffold170_size291898-snap-gene-0.17|Name=cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a|organism=Tigriopus kingsejongensis|type=gene|length=2114bp|location=Sequence derived from alignment at scaffold170_size291898:70111..72224- (Tigriopus kingsejongensis)
ATGCGTGGTCCGGGTGAGCCGGCCGCGGGCGAAGGCGGTTCGCGGGCGGA
TATGGCCAGTCTGCGCCAGCAGTTGGGCGTGCTGTCGACGGGGGCGTCGG
GCGTGGCCCATCGGGACTTGGCCGAGCGTTACCGCCAGATCCTGGAGGTG
ATCCTGACCCTGGGCGAGGACCAGCTGGTCGAGGGCATCAAGGCCTTCAT
CGAGGCCATTGTCAACGAGAACGTGTCGCTGGTCATCTCCCGCCAACTGC
TGGCCGATCTGGTGGCCAACCACCTGACTCAGATGGCCGACTCGGTCTCC
AAGGCCGTGTCCCACTACACCCTGGAGATCGTCCAGCCGCGGGTGATCTC
GTTCGAGGACCAAGTGGGCGCTCTGCGCCAACACCTGTCGGACATCTACG
AGCGCGAGGAGAACTGGCGCNACCATCCAGAGTGTTTGGTTTGAGTCCAA
GCACACCTTCCTCTATGGCTCGAATCTGGCCGACCAGAACCTATCCGAGG
TCTTCAAAGAAAGTAAGCCTGAAAAGTATTACTCCATCATCGAGTGCAAA
GAACCATTAGCTACTTTCGGTCGCTCTAGATAACATAGCCAACTGAACGT
TCCGAAGGCTGACTTTCGTTGGCATGGGTTATGTGTGTGTAATCGTTTAC
TTTCTACATATAAAAAATAGGTTTATTTGCCCCAGAGTCAACACTTAGCA
TACGAATACTAGTCAATAATGTGTCTGGCCCAAGTAATTAGTTGGAACTA
CAGGGTGCGACAGGTACATTCGCCGTTGTACCAAGTGAATGTGTGACGCA
AACGTTTTCTTCAGCGTAAAAGGCTGTACATTTTATAAAACTTGTGTATC
TCATTCAAATTTACCATGGGCCACATTTTTTACTGCGTCTTAGACCTGGT
GACAAAATCCACAAGTGTCCGATCACTCAGAATCGCCGACAGCAGAATTC
GACTCAATCTTGAGTCAATCCATGGTCATTGGTCAACCAGGGACAGTGTT
AAAGATTACCAATAATTATTATTTAATGTATCATCTGGGACCTGAAGGGT
CCACGATGAGATATCTGAGCCACTAGTTATAATTGTGTGTCTCTTGGTCT
TGGATCATCGGAAGACGCCGTTTCGAGTTTTCAAGGAGGCTTTGGTAATT
GGGCGTAGGTAGCTTCATAACGTCTCTACCAAAGTGCGTAATCTTTTCAC
GAATGATGAAAGACTGAGTTTCTTCTGAATTGACCATAGTAATGTATTCA
TTGGTAACTTGGTGACACAAAATTACCATTTGGAGGGCATCATTGAAGAA
GCAGAACATGAGTGGAGCTCGGTTTGACCATCAATGATCTGGAACTGACA
CTATTTTGGGGTTGACACCTTATGCGTCCTATGAAGTGAATCCAACTTCC
ACAAGATGTTGCAACACTGGACCCCAATCCCAAAACAAATTTCTCCCATA
ATTGGAGCCATACTTAGGTCCAGTGTGAAGACCAGAATCACGATTCACTG
TTAAGATTTAGACTTAAGAAATTTAGGACTCGTGACAATAGTATTTACAA
AAGACTAAATTAGATGCAGCCTTCAGTTGTGTCTGAATTTTGAATTCTAT
ACTGAATACGGGGGGCGGAAAGTTTCCCACTCCGCACGATTAATGAATGC
TTCAAATTGGCCTGTCGCCTGGTTTGGGCCCAATGGAGAGAGGACGAAAG
TGGGCATAAATGATCAGATAGATTAGTTTATACATTGAATTCATGAAGCA
GGATTGACAGAGCAATAGTTCTCCTATGTATGCTTGGGGACGATGTCCGA
GGTATGACTATAATACGGTAGCCCATGGGCGGCGATGTAACTTTGAAGGT
CTTGCGTTTGGGGGCATAGCCGACAGGCCGTGAACGGATTGGATAAAGCC
CGCTCGTTTCTTTTCCAGATGATCCTGTGATATTCCTGGCCGAGACGCCA
CCGCCCAACTTTCCCACCAAGTGGTTGGCCAAGCAAGTGCTCGTCAATGA
GCACAGCCAGGGCATTGTGGCCAAGATCATCCAAGGCTTCTCGAGTAGTG
TGGAAGAGGAGGAGGAAGTCGAGCATTAATCACGATGACGTGTCCATTAT
TCCCGTGGCACACG
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Synonyms
The feature 'cop9 (constitutive photomorphogenic) subunit 4 (arabidopsis thaliana) isoform cra_a' has the following synonyms
Synonym
Tk03010
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