wash complex subunit ccdc53 isoform x1, maker-scaffold171_size289870-snap-gene-0.8 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325275000|ref|XP_023322164.1| (uncharacterized protein LOC111696696 [Eurytemora affinis]) HSP 1 Score: 65.4698 bits (158), Expect = 2.109e-9 Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLDGEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWS 149
++DF +PF L++ + + + N +D + + P E+ ++ G + ++ GF + +S PVG +T+ CPEG VF ++WF P + TC + G F+AP WS
Sbjct: 2734 TIDFDEPFILKIRCDDDGWAVQAN---DDPPYPYYLHLFPMTEVKSLEIRGDVQLSYAGFGDANLSPAPPVGFNLTFRCPEGQVFDYDWFATPFVMSTCQENGAFDAPDDWS 2842
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325329177|ref|XP_023346447.1| (uncharacterized protein LOC111715367 [Eurytemora affinis]) HSP 1 Score: 63.929 bits (154), Expect = 6.524e-9 Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLDGEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
++DF +PF +++ ++ + K N +++ + + + IP ++ GS +FVGF++ S PVG +T+ CP G VF +WF P ++TC G F+ W N
Sbjct: 3014 TIDFDEPFIIKLSWDEDGWILKVN---DEVPYPHLLHVIPLSNATSAEIRGSALISFVGFVSNGESAAPPVGFNLTFSCPPGMVFDEDWFAIPFVMMTCQKDGAFDNIPDWDN 3123
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325260558|ref|XP_023329657.1| (uncharacterized protein LOC111702255 [Eurytemora affinis]) HSP 1 Score: 61.2326 bits (147), Expect = 6.120e-8 Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLDGEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWS 149
S+D+ +PF L + + + + N + + + + +P L + + G N++G ++ PVG +TY+CPEG VF +WF P +LTC G+F+ P WS
Sbjct: 1586 SIDYDEPFVLNLSCDQDGWILQIN---NEPSYLTVLHAVPVDNLTEIRVTGDIVVNYIGIGDKDQDPAPPVGFNLTYICPEGQVFDRDWFATPFVMLTCQADGVFD-PVDWS 1693
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325300501|ref|XP_023331914.1| (uncharacterized protein LOC111704034 [Eurytemora affinis]) HSP 1 Score: 60.077 bits (144), Expect = 1.656e-7 Identity = 35/114 (30.70%), Postives = 58/114 (50.88%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLDGEDIG-FHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
S+D+ +PF L + + + + N + + FHA+P L + + G N++G ++ PVG +TYVCPEG VF +W+ P ++TC G+F P WS+
Sbjct: 1877 SIDYDEPFVLNLSCDQDGWNLQINNEPSYLTVFHAMPVD----NLTEIRVTGDIVVNYIGIGDKGQDPAPPVGFNLTYVCPEGQVFDSDWYATPFVMMTCQADGVF-EPIDWSH 1985
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325266586|ref|XP_023339064.1| (uncharacterized protein LOC111709563 [Eurytemora affinis]) HSP 1 Score: 59.6918 bits (143), Expect = 1.781e-7 Identity = 39/132 (29.55%), Postives = 66/132 (50.00%), Query Frame = 0
Query: 19 GLLKVTSSLTPSRVTELSISLDFGDPFTLRVDYEPAKFRFKFNLDGEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
G+L+ T + + E ++DF +PF + + + + + N E+ + + IP + ++G +FVGF +S PVG +T+ CPEG VF H+WF P + TC + G F+ P+ W N
Sbjct: 1413 GVLQGTEDIVNGKPFE-GTTIDFDEPFIITLICDGDGWAVQCN---EEPAYSHYLHIIPIENITHLQIKGDVSLSFVGF-GENLSPAPPVGFNLTFRCPEGMVFDHDWFAIPFVMTTCQENGAFDPPE-WEN 1538
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325321653|ref|XP_023342639.1| (uncharacterized protein LOC111712300 isoform X2 [Eurytemora affinis]) HSP 1 Score: 58.151 bits (139), Expect = 7.709e-7 Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLD-GEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
S+DF +PF L ++ + + + N + D H +P + +L L+ + G NF+G + +S P+G +TY+CP G VF +W P + TC ++G F++ + WS+
Sbjct: 1934 SIDFDEPFILNINCDQDGWNLQVNTELPYDTVLHTVP--LENLTLIT--VTGDIVINFIGIGGQDLSPAPPIGFNLTYICPPGEVFDSDWLATPFVLTTCQESGSFDSVE-WSD 2042
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325321655|ref|XP_023342640.1| (uncharacterized protein LOC111712300 isoform X3 [Eurytemora affinis]) HSP 1 Score: 57.7658 bits (138), Expect = 7.782e-7 Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLD-GEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
S+DF +PF L ++ + + + N + D H +P + +L L+ + G NF+G + +S P+G +TY+CP G VF +W P + TC ++G F++ + WS+
Sbjct: 1884 SIDFDEPFILNINCDQDGWNLQVNTELPYDTVLHTVP--LENLTLIT--VTGDIVINFIGIGGQDLSPAPPIGFNLTYICPPGEVFDSDWLATPFVLTTCQESGSFDSVE-WSD 1992
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Match: gi|1325321651|ref|XP_023342638.1| (uncharacterized protein LOC111712300 isoform X1 [Eurytemora affinis]) HSP 1 Score: 57.7658 bits (138), Expect = 8.173e-7 Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0
Query: 38 SLDFGDPFTLRVDYEPAKFRFKFNLD-GEDIGFHAIPNGIPDLELVQTDLEGSWETNFVGFINRTMSHTIPVGSKITYVCPEGFVFAHNWFQQPKTVLTCFDTGLFNAPQTWSN 150
S+DF +PF L ++ + + + N + D H +P + +L L+ + G NF+G + +S P+G +TY+CP G VF +W P + TC ++G F++ + WS+
Sbjct: 1934 SIDFDEPFILNINCDQDGWNLQVNTELPYDTVLHTVP--LENLTLIT--VTGDIVINFIGIGGQDLSPAPPIGFNLTYICPPGEVFDSDWLATPFVLTTCQESGSFDSVE-WSD 2042 The following BLAST results are available for this feature:
BLAST of wash complex subunit ccdc53 isoform x1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of wash complex subunit ccdc53 isoform x1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of wash complex subunit ccdc53 isoform x1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 8
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold171_size289870:70511..71093+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold171_size289870-snap-gene-0.8 ID=maker-scaffold171_size289870-snap-gene-0.8|Name=wash complex subunit ccdc53 isoform x1|organism=Tigriopus kingsejongensis|type=gene|length=583bp|location=Sequence derived from alignment at scaffold171_size289870:70511..71093+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'wash complex subunit ccdc53 isoform x1' has the following synonyms
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