trna -lysidine synthetase, maker-scaffold187_size272365-snap-gene-1.26 (gene) Tigriopus kingsejongensis

Overview
Nametrna -lysidine synthetase
Unique Namemaker-scaffold187_size272365-snap-gene-1.26
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of trna -lysidine synthetase vs. L. salmonis genes
Match: EMLSAG00000011585 (supercontig:LSalAtl2s:LSalAtl2s800:232205:240525:1 gene:EMLSAG00000011585 transcript:EMLSAT00000011585 description:"maker-LSalAtl2s800-augustus-gene-2.32")

HSP 1 Score: 69.3218 bits (168), Expect = 9.874e-16
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 0 
Query:   21 SLKWNMAMIKLLLAMK-KGDQDQEV-EDELLVNNEIPMKLKEAEITTAPKAQGPVICKMKPFNICYRINPQGQSVHTGGNRRPVRLLRVY 108
            S ++N+AMI  LLAMK KG +  EV  D+ LV  E+   LK  + T     Q P+ICK  P+NICY+I+  G  +H  GN RPVR+LRVY
Sbjct:  119 SAEFNLAMINYLLAMKAKGHKINEVNSDKPLV--ELHKDLKATKATDG-NLQDPLICKTAPYNICYKIDKYG-ILHPLGNHRPVRILRVY 204
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BLAST of trna -lysidine synthetase vs. L. salmonis genes
Match: EMLSAG00000000978 (supercontig:LSalAtl2s:LSalAtl2s116:1659443:1676803:1 gene:EMLSAG00000000978 transcript:EMLSAT00000000978 description:"maker-LSalAtl2s116-augustus-gene-16.10")

HSP 1 Score: 47.7506 bits (112), Expect = 8.697e-8
Identity = 26/91 (28.57%), Postives = 46/91 (50.55%), Query Frame = 0 
Query:   18 EKHSLKWNMAMIKLLLAMKKGDQDQEVEDELLVNNEIPMKLKEAEITTAPKAQGPVICKMKPFNICYRINPQGQSVHTGGNRRPVRLLRVY 108
            EK    W+   +++L  MK+  +  +V  +            +  +  +P +   VICKM+P+N CY + P G  + +   +RP+RLLR+Y
Sbjct:  121 EKSDSNWSPDFVEMLQNMKEEGRSIKVNSDQ----------DDMNLVQSPNS---VICKMEPYNTCYHVAPNGDILLSLVRQRPMRLLRIY 198
The following BLAST results are available for this feature:
BLAST of trna -lysidine synthetase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000115859.874e-1648.89supercontig:LSalAtl2s:LSalAtl2s800:232205:240525:1... [more]
EMLSAG000000009788.697e-828.57supercontig:LSalAtl2s:LSalAtl2s116:1659443:1676803... [more]
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BLAST of trna -lysidine synthetase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of trna -lysidine synthetase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold187_size272365supercontigscaffold187_size272365:159054..159593 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold187_size272365-snap-gene-1.26-mRNA-1maker-scaffold187_size272365-snap-gene-1.26-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold187_size272365:159054..159593+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold187_size272365-snap-gene-1.26 ID=maker-scaffold187_size272365-snap-gene-1.26|Name=trna -lysidine synthetase|organism=Tigriopus kingsejongensis|type=gene|length=540bp|location=Sequence derived from alignment at scaffold187_size272365:159054..159593+ (Tigriopus kingsejongensis)
ATGGAGCAAGGGGAGGCGGGACACAAAGAGGCGATCCATCCCAATCAATA
CGAGAAGCATTCGCTGAAGTGGAACATGGCCATGATCAAGCTTCTGCTGG
CCATGAAGAAGGGCGACCAGGATCAGGAGGTGGAGGATGAGCTCCTCGTC
AACAACGAGGTAAGGTCCAGGTGGCCAGAGCTCTCAGTCTTTGGCGGAGA
TTGACGATGATGAGGGAACAATTTGGACATTTCATTTTTAGATCCCCATG
AAATTGAAAGAGGCCGAGATCACCACCGCACCCAAAGCCCAGGGCCCAGT
GATCTGCAAGATGAAGCCCTTCAACATTTGCTATCGGATCAATCCTCAGG
GACAAAGCGTTCATACAGGGGGAAATCGGAGGCCCGTTAGACTCCTTCGG
GTGTATCGTTAGAAATCCTTTGGCTATTTTCTTACCTTGGATGGTCTCTG
TCAGTTATTGTGGGCCTTGTGTATCCCAATATGCCATGCACTCATCAACA
TCAGAGGGTCAATGTTAAGCCCATCGTTCTACCATTGTTA
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Synonyms
The feature 'trna -lysidine synthetase' has the following synonyms
Synonym
Tk10322
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