abc transporter, maker-scaffold1_size3401120-snap-gene-6.39 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000736 (supercontig:LSalAtl2s:LSalAtl2s1118:20544:21383:1 gene:EMLSAG00000000736 transcript:EMLSAT00000000736 description:"augustus_masked-LSalAtl2s1118-processed-gene-0.6") HSP 1 Score: 92.0485 bits (227), Expect = 4.866e-23 Identity = 64/176 (36.36%), Postives = 92/176 (52.27%), Query Frame = 0 Query: 2 PLHLMSLADLSKTYSTGH---TALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTR------SAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLE-KLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 P +S+ K++ G L +++ I KG I LLGP+G+GKTTL+ + G + SGS++V G Y T+ +G +PQ+L + T+ T+ F +F MPK K L +L KK ++ LSGG +RR +A AL HEP +L LDEPT GVD Sbjct: 23 PRAAISVKGAYKSFGWGKKKVNVLVNLSIRITKGHIYGLLGPSGSGKTTLLQCVIGKQSLDSGSILVFGE-----YPGTKDLGVPGKRVGYMPQDLAMYMELTIMETLEFYGRIFNMPKAKIKKRAKFLVELLELPKKKILIQKLSGGHQRRASLAVALLHEPDLLILDEPTVGVD 193
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000001342 (supercontig:LSalAtl2s:LSalAtl2s1226:24200:67450:1 gene:EMLSAG00000001342 transcript:EMLSAT00000001342 description:"snap_masked-LSalAtl2s1226-processed-gene-0.1") HSP 1 Score: 90.8929 bits (224), Expect = 1.129e-21 Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 0 Query: 2 PLHLMSLADLSKTYSTG---HTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD-GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 P +++L D K Y + L + L I +G I LLG +G GKTT++S I G + G V V G S D G + IG +PQE+ L TV T+ + L+ M D ++ +LK L + +D ++ LSGG KRRV A AL H+P + LDEPT GVD L K Sbjct: 23 PRIVVALRDACKYYGKNAMENRVLNNLNLTITEGSIYGLLGASGCGKTTVLSCIVGRKKLNKGQVTVFGGSPGDKGIGIPGNRIGYMPQEIALYKEFTVRETLKYFGRLYEMETDQIDQRIDFILKFLQITRDRD-MVGKLSGGQKRRVSFAAALLHDPELYILDEPTVGVDPRLRK 198
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000074 (supercontig:LSalAtl2s:LSalAtl2s100:66414:68636:-1 gene:EMLSAG00000000074 transcript:EMLSAT00000000074 description:"augustus_masked-LSalAtl2s100-processed-gene-0.5") HSP 1 Score: 82.0333 bits (201), Expect = 1.296e-18 Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 0 Query: 24 GVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSI-TDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMP--KDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAKF 173 G+ + + KG I LLGP+G GKTTL+ +I G +SG + G T G IG +PQ+L L T+ T+ F L M K + E L++ L L ++ ++SGG +RR+ +A AL HEP +L LDEPT GVD L ++ Sbjct: 44 GLNMSVPKGVIYGLLGPSGCGKTTLLRVITGREKLNSGEFKIFGEDPGTVGLEVPGRRIGYMPQDLALYMELTILETLFFYGRLNKMQTSKIRSRAETLIEILEL-PHSGRLVQNMSGGQRRRISLAVALLHEPELLVLDEPTVGVDPVLRQY 195
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000010048 (supercontig:LSalAtl2s:LSalAtl2s662:116216:125875:1 gene:EMLSAG00000010048 transcript:EMLSAT00000010048 description:"snap_masked-LSalAtl2s662-processed-gene-1.13") HSP 1 Score: 72.7886 bits (177), Expect = 1.916e-15 Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 0 Query: 22 LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRH-TRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWD-------KKDNILMH----LSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 L G++ + + G+ LAL+GP+G GK+T+I +I + S G V +DG IT H RS IG+V QE L + N + GL G + ++ K + +D K D I+ LSGG K+R+ IA+AL P +L LDE ++ +D Sbjct: 263 LSGLSFEASPGKTLALVGPSGCGKSTVIQLIQRFYDPSFGVVSIDGEDITTLDPHWLRSHIGIVGQEPVLFEYSIKEN---ITMGLQGEISEKM-IDDTCKAANAYDFIQRLPKKYDTIVGEKGALLSGGQKQRIAIARALIRNPSILLLDEASSALD 416
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000002221 (supercontig:LSalAtl2s:LSalAtl2s1420:21426:31801:1 gene:EMLSAG00000002221 transcript:EMLSAT00000002221 description:"maker-LSalAtl2s1420-augustus-gene-0.12") HSP 1 Score: 67.0106 bits (162), Expect = 2.187e-13 Identity = 57/180 (31.67%), Postives = 87/180 (48.33%), Query Frame = 0 Query: 6 MSLADLSKTYSTG-HTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD-GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLS-------LWDKKDNILMH-------LSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 +S + S Y G L+ V+LDI GE + ++G GAGK++ + I+ +G++I+DG IT G RS I ++PQ D V + S R L P D +++ +S + KD + H LS G ++ + +A+AL RVL LDE TA VD+E Sbjct: 1320 ISFKNYSTRYREGLDYVLKNVSLDIEGGEKIGIVGRTGAGKSSFTLSMFRIIEPVTGNIIIDGVDITKLGLHQLRSRITIIPQ-------DPVLFSGSLRRNL--DPLDEYNETNIMEAISHSHLKPFIDSLKDGLEYHVSEGGENLSLGQRQLICLARALLRRTRVLILDEATAAVDLE 1490
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000011700 (supercontig:LSalAtl2s:LSalAtl2s812:79332:86643:-1 gene:EMLSAG00000011700 transcript:EMLSAT00000011700 description:"maker-LSalAtl2s812-augustus-gene-0.6") HSP 1 Score: 65.4698 bits (158), Expect = 7.030e-13 Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 0 Query: 21 ALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHT-RSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKD--------PAYLEKLLKQLSLWDKKDNILM----HLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 L+ + + I+ G+ + ++G G+GK+TL + ++ +SG + +DG I HT RS + ++PQ+ TL + T+ + FG+ KD AYL+ LK+ D D ++ ++S G ++ + +A+AL + +VL +DE TA VD E K Sbjct: 1767 VLRDINVHISPGDKIGIVGRTGSGKSTLALALFRLLEVNSGQITIDGVDIKKMGLHTLRSKLTIIPQDPTLFS-----GTLRLNLDPFGLFKDMELIESLKHAYLQDFLKE----DGLDKVIAENGENISLGQRQLICLARALLRKNKVLIMDEATAAVDSETDK 1922 HSP 2 Score: 60.4622 bits (145), Expect = 4.321e-11 Identity = 43/166 (25.90%), Postives = 82/166 (49.40%), Query Frame = 0 Query: 19 HTALQGVTLDIAKGEILALLGPNGAGKTTLISIICG-IVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNIL-----------MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 + + +++D+ +G ++A++GP G+GK++LIS + G ++ S G+ V+ H ++ PQ + N LFG + + +++LK SL + ++LSGG K+R+ +A+A+ + + FLD+P A VD +AK Sbjct: 1161 ESLFKDISMDVNRGNLIAIIGPVGSGKSSLISALLGEMLFTSKGTNPVEIHG----------SVAYTPQNAWMQNVSVKDNI------LFGRKFNKNWYDEVLKACSLESDMEXFPSGDSTEIGEKGINLSGGQKQRISLARAVYSQSDIYFLDDPLAXVDSHVAK 1310
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000008248 (supercontig:LSalAtl2s:LSalAtl2s498:229862:245360:1 gene:EMLSAG00000008248 transcript:EMLSAT00000008248 description:"maker-LSalAtl2s498-snap-gene-2.25") HSP 1 Score: 61.2326 bits (147), Expect = 2.025e-11 Identity = 51/177 (28.81%), Postives = 88/177 (49.72%), Query Frame = 0 Query: 4 HLMSLADLSKTYST--GHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTV----SFSRGLFGMPKDPAYLEKLLKQLSLWDKKD--NILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 H + + ++S ++ T G L+ + LDI KG ++A++G G+GK++L+S I G + GS+ VDG +I PQ+ L +T+ N + F++ L+ D L L L D + ++LSGG K RV +A+ + + LD+P + VDV + + Sbjct: 615 HAVKMCNVSLSWETDEGLNTLEDIDLDIEKGSLVAIVGQVGSGKSSLLSGILGEMEIVRGSINVDGQTI------------YAPQQPWLQN-ETLRNNILFGKRFNKKLYRRVIDACALSPDLDMLPAGDLTEIGERGINLSGGQKARVSLARCTXNNGDIYILDDPLSAVDVHVGR 778 HSP 2 Score: 59.6918 bits (143), Expect = 6.662e-11 Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 0 Query: 21 ALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD-GYRHTRSAIGLVPQE---------LTLGAFDT-----VWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILM-------HLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 L+G+ I KGE + ++G GAGK++L + I+ S GS+ +DG +I G RS I ++PQ+ + L F+ +W + +S LK +W+ D + +LS G ++ + +A+A+ + ++L LDE TA +D+E Sbjct: 1296 VLKGINCTIQKGEKIGIVGRTGAGKSSLTLALFRIIEPSEGSIYIDGENIRFLGLGKLRSRITIIPQDPILFSGSLRMNLDPFEAFADRDIWIALEYSH---------------LKSF-VWNLGDGLNFSVLEGGRNLSVGQRQLICLARAILRKTQILVLDEATAAIDLE 1450
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000003611 (supercontig:LSalAtl2s:LSalAtl2s197:49356:53594:-1 gene:EMLSAG00000003611 transcript:EMLSAT00000003611 description:"augustus_masked-LSalAtl2s197-processed-gene-0.4") HSP 1 Score: 59.6918 bits (143), Expect = 5.795e-11 Identity = 52/184 (28.26%), Postives = 87/184 (47.28%), Query Frame = 0 Query: 13 KTYSTGHTA-----LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSI-TDGYRHTRSAIGLVPQELTL------------GAFD--TVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNIL-------MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 K YS + A L+ + I GE + ++G GAGK++L + IV A++G +++DG I T G R ++ ++PQE L AF +WNT+ +L++ ++ D KD + ++LS G ++ + +A+AL ++L LDE TA VD E Sbjct: 1162 KNYSLRYKANSDLVLKKINFTIFGGERVGIVGRTGAGKSSLSVALFRIVEAANGQILIDGKDISTLGLHDLRESLTVIPQEPLLFSGTLRSNLDPENAFSDHDIWNTLG-----------SVHLKEYIR-----DLKDGLNHSISEGGLNLSSGQRQLMCLARALLRSCKILILDEATAAVDWE 1329 HSP 2 Score: 58.151 bits (139), Expect = 2.152e-10 Identity = 47/165 (28.48%), Postives = 75/165 (45.45%), Query Frame = 0 Query: 19 HTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLK------QLSLWDKKDNIL-----MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 L + L I G + A++G G+GK++LIS I G + SG V + G I VPQE + NT + LFG P D + ++L+ LSL D ++LSGG ++R+ +A+A+ + V D P + +D ++ K Sbjct: 568 ENTLSNINLRIKHGSLTAIVGTVGSGKSSLISAILGEMVKKSGKVRIKGQ------------IAYVPQESWMQ------NTSLKNNILFGKPYDEEWYNQVLEYCCLTYDLSLLPAGDETEIGERGINLSGGQRQRISLARAIYSDADVYIFDNPLSALDSQVGK 714
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 59.3066 bits (142), Expect = 7.454e-11 Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0 Query: 10 DLSKTY-STGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTL 90 +LSK Y ++A+ ++ + +GE LLG NGAGKTT ++ G +N +SG ++G+SI + R ++G PQE L Sbjct: 431 ELSKRYWRQKNSAVDKLSFGVRRGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQEDAL 512
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000003104 (supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18") HSP 1 Score: 56.6102 bits (135), Expect = 6.849e-10 Identity = 41/178 (23.03%), Postives = 83/178 (46.63%), Query Frame = 0 Query: 6 MSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHT-RSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNIL---------------MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 ++ D+ Y+ G++ + G+ +A++G +G+GK+TL+ ++ GS+ + ++I + + R I +VPQ+ L DT+++ + + G + Y L ++ DN + + LSGG K+RV IA+A + ++ DE T+ +D Sbjct: 364 ITFDDVKFGYNIDKNIANGLSFSVESGKTIAIVGESGSGKSTLVRLLYRFYEPQLGSIKIGNYNINEVTLDSLRRQISIVPQDCVLFN-DTIFHNIKY--GNLNCSDEDVYKVAKLAEI------DNAIRSWPQGYLTQVGERGLKLSGGEKQRVAIARAALKDSPIIIFDEATSSLD 532
BLAST of abc transporter vs. SwissProt
Match: gi|1176170|sp|P45073.1|LPTB_HAEIN (RecName: Full=Lipopolysaccharide export system ATP-binding protein LptB) HSP 1 Score: 100.908 bits (250), Expect = 4.077e-25 Identity = 58/173 (33.53%), Postives = 99/173 (57.23%), Query Frame = 0 Query: 3 LHLMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRS--AIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKD------PAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 + +++ +L+K+Y + + V+L + EI+ LLGPNGAGKTT ++ G+V G +++DG I+ H R+ IG +PQE ++ TV+ + + + KD ++L+++ ++ +DN+ LSGG +RRV IA+AL+ P+ + LDEP AGVD Sbjct: 1 MSILTAENLAKSYKS-RKVVSDVSLTVNSNEIVGLLGPNGAGKTTTFYMVVGLVRQDQGKIVIDGEDISLLPMHNRAQRGIGYLPQEASIFRRLTVYENLM---AVLEIRKDLTPQQRREKADELIEEFNISHIRDNLGQALSGGERRRVEIARALAANPKFILLDEPFAGVD 169
BLAST of abc transporter vs. SwissProt
Match: gi|81850679|sp|Q8YD40.1|METN_BRUME (RecName: Full=Methionine import ATP-binding protein MetN >gi|122064380|sp|Q2YIV5.2|METN_BRUA2 RecName: Full=Methionine import ATP-binding protein MetN >gi|122064381|sp|Q579H8.2|METN_BRUAB RecName: Full=Methionine import ATP-binding protein MetN >gi|122064382|sp|Q8FV85.2|METN_BRUSU RecName: Full=Methionine import ATP-binding protein MetN) HSP 1 Score: 103.219 bits (256), Expect = 4.688e-25 Identity = 64/172 (37.21%), Postives = 99/172 (57.56%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTA-LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT----DGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 ++ + D+ + + G TA + GV+L +A+GEIL ++G +GAGK+TLI + G+ +GS+ ++G IT D R R IG+V Q L + T ++ + GMPK + +LL+ + L DK + LSGG K+RV IA+AL+ EP VL DE T+ +D E Sbjct: 30 IVEMKDVRRMF--GETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDEDALRPVRRRIGMVFQHFNLLSAKTAAQNIALPLKIAGMPKAERIKRVAELLELVGLSDKASHYPAQLSGGQKQRVGIARALAAEPAVLLSDEATSALDPE 199
BLAST of abc transporter vs. SwissProt
Match: gi|124015176|sp|Q2SVP3.2|NODI_BURTA (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 102.064 bits (253), Expect = 4.938e-25 Identity = 62/165 (37.58%), Postives = 91/165 (55.15%), Query Frame = 0 Query: 6 MSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGA-FDTVWNTVSFSRGLFGMP--KDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 + + K Y + G++ + GE LLGPNGAGKTT + ++ GI + +GS+ + G + RH R +G+VPQ L F N + F+R FG+ + A + LL+ L +K D + LSGGMKRR+ +A+AL + P VL LDEPT G+D Sbjct: 6 IDFQQVEKRYDD-KLVVDGLSFHVQPGECFGLLGPNGAGKTTALKMLLGITHPDAGSISLCGEPVPSRARHARRRVGVVPQFDNLDPDFTVRENLLVFAR-YFGLAAHEARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNNPDVLVLDEPTTGLD 168
BLAST of abc transporter vs. SwissProt
Match: gi|34222641|sp|Q9JZW0.1|CYSA_NEIMB (RecName: Full=Sulfate/thiosulfate import ATP-binding protein CysA; AltName: Full=Sulfate-transporting ATPase) HSP 1 Score: 102.834 bits (255), Expect = 4.994e-25 Identity = 62/176 (35.23%), Postives = 104/176 (59.09%), Query Frame = 0 Query: 6 MSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRS-AIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDP--------AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 +++ +L+K + H AL+ + L++ G++++LLGP+G GKTTL+ II G+ NA G+++ DG +T +H R +G V Q L V++ V+F GL +PK A +E+LLK + L + LSGG ++R+ +A+AL+ EP++L LDEP +D ++ K Sbjct: 3 ITIQNLNKHFGNFH-ALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLENADGGNILFDGQDVTA--KHVRERKVGFVFQHYALFRHMNVFDNVAF--GLTVLPKSERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEPFGALDAKVRK 173
BLAST of abc transporter vs. SwissProt
Match: gi|122064387|sp|Q1QVQ7.1|METN_CHRSD (RecName: Full=Methionine import ATP-binding protein MetN) HSP 1 Score: 102.834 bits (255), Expect = 5.044e-25 Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTA---LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT----DGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 ++ L +SKTY G TA L+ + LD+ +G I ++G +GAGK+TLI + + +SG VIVDG +T + R +R +G++ Q L A TV++ V+ L G+ K +E LL L DK LSGG K+RV IA+AL+ P+VL DE T+ +D Sbjct: 1 MIKLEGVSKTYGAGPTAVHALKNIDLDVPQGAIHGVIGLSGAGKSTLIRCVNLLERPTSGRVIVDGQDLTRQDAEALRQSRHQLGMIFQHFNLLASRTVFDNVALPLELMGVSKSDIRERVEPLLDLTGLTDKARQYPAQLSGGQKQRVAIARALASRPKVLLCDEATSALD 172
BLAST of abc transporter vs. nr
Match: gi|551334818|ref|WP_022954255.1| (ABC transporter ATP-binding protein [Leucothrix mucor]) HSP 1 Score: 263.077 bits (671), Expect = 4.647e-85 Identity = 126/168 (75.00%), Postives = 144/168 (85.71%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DL KTY +GH AL+ V L+I KGEILALLGPNGAGKTTLIS ICG+V+ +SG+V VDGH I +RHTRS IGLVPQEL+LGAFD VW+TVSFSRGLFG +PAY+E+LLK L+LWDKKD+ LM LSGGMKRRVLIAKALSHEP VLFLDEPTAGVDVEL K Sbjct: 4 IISIVDLCKTYDSGHQALKSVNLEIKKGEILALLGPNGAGKTTLISTICGLVSPTSGTVTVDGHDIIKDFRHTRSCIGLVPQELSLGAFDKVWDTVSFSRGLFGKKPNPAYIEQLLKDLTLWDKKDSELMRLSGGMKRRVLIAKALSHEPSVLFLDEPTAGVDVELRK 171
BLAST of abc transporter vs. nr
Match: gi|1054020431|ref|WP_066130944.1| (ABC transporter ATP-binding protein [Bordetella ansorpii] >gi|1018537617|emb|SAI72303.1| ABC transporter ATP-binding protein [Bordetella ansorpii]) HSP 1 Score: 261.536 bits (667), Expect = 1.855e-84 Identity = 123/168 (73.21%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ LSK Y +GH AL+ + LDI +GEI ALLGPNGAGKTTLISIICGIVNAS G+V+ DGH I YR R AIGLVPQELT AF+TVWNTV+FSRGLFGMP +PA++EK+L+ LSLWDKKD +M LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 VISVQGLSKQYKSGHQALKNINLDIRRGEIFALLGPNGAGKTTLISIICGIVNASQGTVLADGHDIGANYREARKAIGLVPQELTTDAFETVWNTVTFSRGLFGMPPNPAHVEKVLRDLSLWDKKDTRIMALSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|490509858|ref|WP_004375874.1| (ABC transporter ATP-binding protein [Thauera phenylacetica] >gi|479307331|gb|ENO95431.1| ABC transporter [Thauera phenylacetica B4P]) HSP 1 Score: 261.536 bits (667), Expect = 2.267e-84 Identity = 125/168 (74.40%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY++G +AL+GV LDI +GEI ALLGPNGAGKTTLIS++CG+VNAS+G+V VDGH I YR R+ IGLVPQELT AF+TVWNTVSFSRGLFG P DPAYLE+LLK LSLW K+D LM LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 IISISALSKTYASGFSALKGVDLDIRRGEIFALLGPNGAGKTTLISVVCGLVNASAGTVRVDGHDIVRDYRAARALIGLVPQELTTDAFETVWNTVSFSRGLFGKPPDPAYLEQLLKDLSLWAKRDAKLMMLSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|1126156221|ref|WP_075160179.1| (ABC transporter ATP-binding protein [Paraburkholderia sp. SOS3] >gi|1125917345|gb|APR39008.1| multidrug ABC transporter ATP-binding protein [Paraburkholderia sp. SOS3]) HSP 1 Score: 260.766 bits (665), Expect = 3.271e-84 Identity = 123/168 (73.21%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+++LSKTY++G AL+G+ L I +GEI ALLGPNGAGKTTLISI+CGIV AS+GSV+VDGH I YR R IGLVPQELT AF+TVW TVSFSRGLFG PK+PAY+EK+L+ LSLW+K+DN +M LSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVEL + Sbjct: 4 IISISNLSKTYASGFHALKGINLSIGRGEIFALLGPNGAGKTTLISIVCGIVRASAGSVVVDGHDIQHDYRAARELIGLVPQELTTDAFETVWATVSFSRGLFGKPKNPAYIEKVLRDLSLWEKRDNRIMTLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|893711675|ref|WP_048939938.1| (ABC transporter ATP-binding protein [Bordetella hinzii]) HSP 1 Score: 260.766 bits (665), Expect = 4.244e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 15 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 182
BLAST of abc transporter vs. nr
Match: gi|501580647|ref|WP_012584971.1| (MULTISPECIES: ABC transporter ATP-binding protein [Thauera] >gi|217507079|gb|ACK54090.1| ABC transporter related [Thauera sp. MZ1T] >gi|752199397|gb|KIN91116.1| ABC transporter family protein [Thauera sp. SWB20]) HSP 1 Score: 261.536 bits (667), Expect = 4.337e-84 Identity = 126/168 (75.00%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY++G +AL+GV LDI +GEI ALLGPNGAGKTTLISI+CG+VNASSGSV VDGH I YR R+ +GLVPQELT AF+TVWNTVSF+RGLFG P DPAY+E+LLK LSLW KKD LM LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 IISISALSKTYASGFSALKGVDLDIRRGEIFALLGPNGAGKTTLISIVCGLVNASSGSVRVDGHDIVRDYRAARALVGLVPQELTTDAFETVWNTVSFTRGLFGKPPDPAYIEQLLKDLSLWAKKDARLMMLSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|916987706|ref|WP_051594418.1| (ABC transporter ATP-binding protein [Bordetella hinzii]) HSP 1 Score: 260.766 bits (665), Expect = 4.433e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 15 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 182
BLAST of abc transporter vs. nr
Match: gi|1054652997|ref|WP_066420489.1| (ABC transporter ATP-binding protein [Bordetella ansorpii] >gi|1018186674|emb|SAI57941.1| ABC transporter ATP-binding protein [Bordetella ansorpii]) HSP 1 Score: 260.381 bits (664), Expect = 4.586e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ LSK Y +GH AL+ + LDI +GEI ALLGPNGAGKTTLISIICGIVNAS G+V+ DGH I YR R AIGLVPQELT AF+TVWNTV+FSRGLFGMP +PA++EK+L+ LSLW+KKD +M LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 VISVQGLSKQYKSGHQALKNINLDIRRGEIFALLGPNGAGKTTLISIICGIVNASQGTVLADGHDIGANYREARKAIGLVPQELTTDAFETVWNTVTFSRGLFGMPPNPAHIEKVLRDLSLWEKKDTRIMALSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|890882591|gb|AKQ59271.1| (putative ABC transporter ATP-binding protein YbhF [Bordetella hinzii]) HSP 1 Score: 260.381 bits (664), Expect = 4.785e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 6 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 173
BLAST of abc transporter vs. nr
Match: gi|1055575037|ref|WP_067217254.1| (ABC transporter ATP-binding protein [Stappia indica] >gi|1247743151|emb|SOB89281.1| ABC-2 type transport system ATP-binding protein [Stappia indica]) HSP 1 Score: 259.996 bits (663), Expect = 5.466e-84 Identity = 127/168 (75.60%), Postives = 143/168 (85.12%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY TG AL+ V+LDI KGE+ ALLGPNGAGKTTLISI+CGIVNASSGSV VDG+ I YR RS IGLVPQELT AF+TVW TVSFSRGLFG PK PA +EK+L+ LSLWDKKDN L+ LSGGMKRRVLIAKAL+HEPRVLFLDEPTAGVDVEL + Sbjct: 4 ILSISGLSKTYDTGFQALKSVSLDIEKGEVFALLGPNGAGKTTLISIVCGIVNASSGSVTVDGNDIVRDYRAARSLIGLVPQELTTDAFETVWATVSFSRGLFGKPKAPAIVEKVLRDLSLWDKKDNKLVTLSGGMKRRVLIAKALAHEPRVLFLDEPTAGVDVELRR 171 The following BLAST results are available for this feature:
BLAST of abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 16
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BLAST of abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:674010..675554+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1_size3401120-snap-gene-6.39 ID=maker-scaffold1_size3401120-snap-gene-6.39|Name=abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1545bp|location=Sequence derived from alignment at scaffold1_size3401120:674010..675554+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc transporter' has the following synonyms
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