abc transporter, maker-scaffold1_size3401120-snap-gene-6.39 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000741 (supercontig:LSalAtl2s:LSalAtl2s111:116041:261433:1 gene:EMLSAG00000000741 transcript:EMLSAT00000000741 description:"maker-LSalAtl2s111-snap-gene-2.14") HSP 1 Score: 55.8398 bits (133), Expect = 1.409e-9 Identity = 44/163 (26.99%), Postives = 76/163 (46.63%), Query Frame = 0 Query: 22 LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSL------WDKKDNIL-----MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAKF 173 L+ V+ + K E+ A++GP G+GK+T++ + G SSG + + G I+ + G + Q + LGA P + K+LK SL W +D+ + LSGG K R+ +A+++ E V LD+P + VD + ++ Sbjct: 1219 LRNVSFQVHKRELTAIIGPVGSGKSTILQALLGEFPVSSGDISIYG-KISYASQEPWIFSGTIRQNILLGA-----------------PMNHKRYLKVLKVCSLDHDLESWPDRDHTFVGEKGVALSGGQKARINLARSVYSEGDVYLLDDPLSAVDSHVGRY 1363 HSP 2 Score: 54.299 bits (129), Expect = 4.518e-9 Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 0 Query: 22 LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSL------WDKKDNIL-----MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 L+ V+ + K E+ A++GP G+GK+T++ + G SSG + + G I+ + G + Q + LGA +++ R L K+LK SL W +D+ + LSGG K R+ +A+++ E V LD+P + VD + + Sbjct: 440 LRNVSFQVHKRELTAIIGPVGSGKSTILQALLGEFPVSSGDISIYG-KISYASQEPWIFSGTIRQNILLGA------SMNHKRYL-----------KVLKVCSLEHDLESWPDRDHTFVGEKGVALSGGQKARINLARSVYSEADVYLLDDPLSAVDSHVGR 583
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 54.6842 bits (130), Expect = 3.222e-9 Identity = 48/170 (28.24%), Postives = 74/170 (43.53%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQE----LTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMH-LSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 + L ++S Y + + + V I +A++GPNG GK+T + ++ G + + G + ++ R IG Q LT T + LF +P + A K L L I M LSGG K RV +A+ P V+ LDEPT +D+E Sbjct: 509 FLGLYNVSFKYESQNPLFKSVDFGIDMESRIAIVGPNGVGKSTFLKLLMGDLEPTKGEM----------RKNARLKIGRFDQHSGEHLTADEXPT-----EYIMRLFNLPVEKA--RKQLGSFGLQSHAHTIKMKDLSGGQKSRVALAELTLSAPDVVILDEPTNNLDIE 661
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000007660 (supercontig:LSalAtl2s:LSalAtl2s445:12562:17493:1 gene:EMLSAG00000007660 transcript:EMLSAT00000007660 description:"maker-LSalAtl2s445-augustus-gene-0.18") HSP 1 Score: 53.5286 bits (127), Expect = 8.330e-9 Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 0 Query: 19 HTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSG-SVIVDGHSITD-------GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPK----------DPAYLEKLLKQLSLWDKKDNIL----MHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 L+ +L I + +AL+G +G GKTT+ +++ + + G S+ +DG +I D G SAIG + QE L A + N +G P A+++ ++ + D IL + +SGG K+R+ IA+AL P +L LDE T+ +D E Sbjct: 448 QAVLKDFSLRIPPSKTVALVGTSGGGKTTIAALLERFYDINGGGSLEIDGINIRDLDPSWLRG-----SAIGYINQEPVLFATSVIENI------RYGRPNATDNEVYEAAKAAHVDDFVR--TFPDGYSTILGERGVTVSGGQKQRIAIARALLKNPPILILDEATSALDAE 607
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000133 (supercontig:LSalAtl2s:LSalAtl2s1021:132111:135265:-1 gene:EMLSAG00000000133 transcript:EMLSAT00000000133 description:"maker-LSalAtl2s1021-augustus-gene-0.34") HSP 1 Score: 51.2174 bits (121), Expect = 3.979e-8 Identity = 43/159 (27.04%), Postives = 77/159 (48.43%), Query Frame = 0 Query: 11 LSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 +SKT T ++Q + + EIL +LG NG GKTT I ++ G + +GS + +I+ Y+ PQ+++ + TV + + P ++ +++ + + D D + +LSGG +RV + L V +DEP+A +D E Sbjct: 368 MSKTMGTFKLSVQAG--NFSDSEILVMLGENGTGKTTFIRMMAGKLEPDTGSGEIPQLNIS--YK---------PQKISPKSQGTVRTLL--HEKIRDAYIHPQFVADVMRPMKIDDIIDQEVQNLSGGELQRVALTLCLGKPADVYLIDEPSAYLDSE 511
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000007911 (supercontig:LSalAtl2s:LSalAtl2s467:413568:427137:-1 gene:EMLSAG00000007911 transcript:EMLSAT00000007911 description:"maker-LSalAtl2s467-augustus-gene-3.18") HSP 1 Score: 50.447 bits (119), Expect = 7.598e-8 Identity = 42/152 (27.63%), Postives = 77/152 (50.66%), Query Frame = 0 Query: 22 LQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNA-SSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAY-----LEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 L+ V++++ GE+ A+LG G+GK L+ +I + G ++++G + R + + G V Q+ L TV T+ +S L K ++ +++++ L+L + + LS RR++I L +P VL LDEPT +D Sbjct: 56 LKDVSMELHGGELSAVLGSKGSGKHALLEVISRRAQGPTRGQILLNG--VPMSMRLFQESCGXVTQKXDLLPGXTVKETLEYSANLTVGSKVGSFVKHSRVKQVMADLALTNLANRNSESLSQSEYRRLVIGXQLVRDPVVLLLDEPTWDLD 205
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000012458 (supercontig:LSalAtl2s:LSalAtl2s917:121539:129683:-1 gene:EMLSAG00000012458 transcript:EMLSAT00000012458 description:"maker-LSalAtl2s917-augustus-gene-1.21") HSP 1 Score: 50.447 bits (119), Expect = 7.907e-8 Identity = 41/139 (29.50%), Postives = 66/139 (47.48%), Query Frame = 0 Query: 35 LALLGPNGAGKTTLISIICGIVNASSGSVIVDGH-SITDGYRHTRSAIGL--VPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDK-KDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 LAL+GPNGAGK+TL+ +I G + S G + + H I ++H + + P E + F V K+ + K++ + + K + + + LS G + RV A P +L LDEPT +D+E Sbjct: 385 LALVGPNGAGKSTLLKLIYGDLIPSEGMIRRNNHLKIGRYHQHLHELLEMDSTPLEYMMKQFPAV--------------KERDEMRKIIGRYGITGKMQTSPIKQLSDGQRCRVCFAWLAWQSPHMLLLDEPTNHLDME 509
BLAST of abc transporter vs. SwissProt
Match: gi|123724457|sp|Q2JLH7.1|PHNC2_SYNJB (RecName: Full=Phosphonates import ATP-binding protein PhnC 2) HSP 1 Score: 103.219 bits (256), Expect = 8.356e-26 Identity = 68/179 (37.99%), Postives = 102/179 (56.98%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSI----TDGYRHTRSAIGLVPQELTLGAFDTVWNT--------VSFSRGLF-GMPK---DPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 ++ + LSK Y TG AL+GVTL++ G+++AL+GP+GAGK+TL+ I +V +SGS+ ++G + T R R IG++ QE L TV V+F + F P+ D A+ +LL ++ L D D LSGG ++RV IA+AL P +L +DEPTA +D Sbjct: 1 MLRIDSLSKRYPTGDMALKGVTLEVPDGQVMALIGPSGAGKSTLLRCINRLVEPTSGSIWLNGIDLTRLNTRELRQARRKIGMIFQEYALVERLTVMENVLSGQLGYVNFWQSWFRKFPQATIDEAF--RLLDRVGLSDFPDKRADALSGGQRQRVGIARALLQNPELLLVDEPTASLD 177
BLAST of abc transporter vs. SwissProt
Match: gi|81836221|sp|Q7VV72.1|METN_BORPE (RecName: Full=Methionine import ATP-binding protein MetN >gi|81836507|sp|Q7W4E1.1|METN_BORPA RecName: Full=Methionine import ATP-binding protein MetN >gi|81836868|sp|Q7WFU9.1|METN_BORBR RecName: Full=Methionine import ATP-binding protein MetN) HSP 1 Score: 104.76 bits (260), Expect = 1.175e-25 Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGH---TALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD----GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKD--PAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 ++ + +LSKTY+T H AL+G+ L I +GE+ ++GP+GAGK+TL+ I + GS+ + G ++ R+ R IG+V Q L A TV+ V+ + G+ + PA +E+LL + L +D +SGG K+RV IA+AL+++P VL DE T+ +D E Sbjct: 1 MIHIENLSKTYATPHGRFEALRGINLHIQQGEVFGIIGPSGAGKSTLVQCINLLERPDQGSIAIGGQALVGLGEAQLRNQRRRIGMVFQGFNLLARRTVYGNVALPLEIAGVARAEIPARVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALANDPDVLLSDEATSALDPE 174
BLAST of abc transporter vs. SwissProt
Match: gi|122973014|sp|Q16BJ3.1|TAUB_ROSDO (RecName: Full=Taurine import ATP-binding protein TauB) HSP 1 Score: 102.834 bits (255), Expect = 1.223e-25 Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = 0 Query: 21 ALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT--DGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPK--DPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 ALQ V+LD+ GE+L++LGP+G GKTTL++I+ G + +SG +I++GH IT D R G+V Q+ L + +V V+F + G PK ++ LL + L D K+ + LSGGM++RV +A+ L+++P V+ +DEP +D Sbjct: 23 ALQDVSLDLKAGELLSVLGPSGCGKTTLLNIVAGFLAPTSGELILNGHRITGPDAER------GMVFQQGALFEWMSVRENVAFGPSMKGTPKVDKDKTVDHLLDVVGLQDFKEKAVYELSGGMQQRVALARCLANDPDVILMDEPLGALD 167
BLAST of abc transporter vs. SwissProt
Match: gi|152031909|sp|A3CVD3.1|ECFA_METMJ (RecName: Full=Energy-coupling factor transporter ATP-binding protein EcfA; Short=ECF transporter A component EcfA) HSP 1 Score: 102.834 bits (255), Expect = 1.379e-25 Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 0 Query: 3 LHLMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT-DGYRHTRSAIGLVPQELTLGAFD-TVWNTVSFSRGLFGMPKDPA--YLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 +HL+ DL+ Y AL+GV + +A++GPNGAGK+TL GI+ +SG V+V G IT + R R +G+V Q F TV ++F G+ + +E+ L L + + ++ + HLSGG K+RV IA L+ EP+VL LDEPTAG+D Sbjct: 1 MHLLETRDLTHIYRGDVHALEGVNFTAERKSRIAVIGPNGAGKSTLFKHFNGILKPTSGEVLVRGEPITKENVREVRKFVGIVFQNPDDQIFSPTVEQDIAFGPINLGLDEATVAHRVEEALHLLGIEELRERVPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGLD 169
BLAST of abc transporter vs. SwissProt
Match: gi|81766800|sp|Q8XIZ5.1|POTA_CLOPE (RecName: Full=Spermidine/putrescine import ATP-binding protein PotA >gi|123049692|sp|Q0TNZ3.1|POTA_CLOP1 RecName: Full=Spermidine/putrescine import ATP-binding protein PotA) HSP 1 Score: 103.99 bits (258), Expect = 1.737e-25 Identity = 63/171 (36.84%), Postives = 100/171 (58.48%), Query Frame = 0 Query: 4 HLMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKD--PAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 +++ L ++K+Y T L ++L+I K E L LLGP+G GKTT + II G A SG V+ + + I D + R + V Q+ L V+ ++F L MPKD ++++LK ++L ++ + LSGG ++RV IA+AL +EP+VL LDEP +D++L K Sbjct: 5 NIIELKGITKSYGK-DTILDNLSLNIKKNEFLTLLGPSGCGKTTTLKIIAGFETADSGQVVFENNIINDIPPYERQ-LNTVFQKYALFPHMNVYENIAFGLKLKKMPKDVIDQKVKEMLKLVALEGYENRDIEALSGGQQQRVAIARALVNEPKVLLLDEPLGALDMKLRK 173
BLAST of abc transporter vs. SwissProt
Match: gi|81837521|sp|Q81IZ6.1|METN1_BACCR (RecName: Full=Methionine import ATP-binding protein MetN 1) HSP 1 Score: 103.605 bits (257), Expect = 2.318e-25 Identity = 61/174 (35.06%), Postives = 99/174 (56.90%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHT---ALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT----DGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 ++ L ++SK ++T AL+ +L + KGE+ ++G +GAGK+TLI + + ++G++IV+ +T R IG++ Q L TV+ ++ L G+PK +EK L+ + L+++KD LSGG K+RV IA+ALSHEP VL DE T+ +D E Sbjct: 1 MIELKNVSKVFTTKKVNVEALKSTSLQVKKGEVFGIIGYSGAGKSTLIRCVNLLEKPTTGNIIVNNQDLTTLSAKELAKARQKIGMIFQGFNLLKTVTVYENIALPLRLAGIPKTEIEKRVEKYLRIVDLFNRKDAYPSELSGGQKQRVAIARALSHEPEVLLSDEATSALDPE 174
BLAST of abc transporter vs. SwissProt
Match: gi|122978951|sp|Q1BWI2.1|NODI_BURCA (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 102.834 bits (255), Expect = 2.330e-25 Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 0 Query: 6 MSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGA-FDTVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 + ++ K Y + G++ + GE LLGPNGAGKTT + ++ G+ + +G++ + G + RH R +G+VPQ L F N + FSR FGM A + LL+ L +K D + LSGGMKRR+ +A+AL ++P VL LDEPT G+D Sbjct: 6 IDFRNVEKRYGD-KLVVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFSR-YFGMSAQAARALVAPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168
BLAST of abc transporter vs. SwissProt
Match: gi|23396743|sp|Q9CK97.1|METN_PASMU (RecName: Full=Methionine import ATP-binding protein MetN) HSP 1 Score: 103.605 bits (257), Expect = 2.524e-25 Identity = 65/172 (37.79%), Postives = 97/172 (56.40%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGH---TALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD----GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAY--LEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 ++ L +SK + TAL V+L + KG+I ++G +GAGK+TLI + + SSG+VIVDG +T H R IG++ Q L TV+ ++ L PK+ + + +LL + L DKKD +LSGG K+RV IA+AL+ EP+VL DE T+ +D Sbjct: 1 MIKLEKISKIFDVSGKKLTALDNVSLHVPKGQICGVIGASGAGKSTLIRCVNLLETPSSGAVIVDGKDLTQLKNADLVHERRHIGMIFQHFNLLTSRTVFGNIALPLELENTPKEKIHQKVNELLALVGLTDKKDAYPSNLSGGQKQRVAIARALASEPKVLLCDEATSALD 172
BLAST of abc transporter vs. SwissProt
Match: gi|122956905|sp|Q0SWH9.1|ECFA2_CLOPS (RecName: Full=Energy-coupling factor transporter ATP-binding protein EcfA2; Short=ECF transporter A component EcfA2) HSP 1 Score: 102.064 bits (253), Expect = 3.129e-25 Identity = 64/173 (36.99%), Postives = 96/173 (55.49%), Query Frame = 0 Query: 1 MPLHLMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSIT---DGYRHTRSAIGLVPQELTLGAFD-TVWNTVSFSRGLFGMPKDP--AYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVD 167 M +++ + +L+ YS G AL+G+ ++I +GE+ A+LG NG GK+TL GI+ SSG ++ D I G R +IG+V Q+ F +V+ VSF +P+D ++ LK+ + K+ LS G K+RV IA L EP+VL LDEPTAG+D Sbjct: 1 MEDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKNKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 173
BLAST of abc transporter vs. SwissProt
Match: gi|122064379|sp|Q2KVK2.1|METN_BORA1 (RecName: Full=Methionine import ATP-binding protein MetN) HSP 1 Score: 103.219 bits (256), Expect = 3.389e-25 Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGH---TALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITD----GYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKD--PAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVE 169 ++ + +LSKTY+T H AL+G+ L I +GE+ ++GP+GAGK+TL+ I + GS+ + G +T R R IG+V Q L + TV+ V+ + G+P+ P +E+LL + L +D +SGG K+RV IA+AL+++P VL DE T+ +D E Sbjct: 1 MIHIKNLSKTYATPHGRFEALRGIDLLIEQGEVFGIIGPSGAGKSTLVQCINLLERPDQGSISIGGQELTGLSEAQLRGQRRRIGMVFQGFNLLSRRTVYGNVALPLEIAGVPRQEIPGKVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALANDPDVLLSDEATSALDPE 174
BLAST of abc transporter vs. nr
Match: gi|551334818|ref|WP_022954255.1| (ABC transporter ATP-binding protein [Leucothrix mucor]) HSP 1 Score: 263.077 bits (671), Expect = 4.647e-85 Identity = 126/168 (75.00%), Postives = 144/168 (85.71%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DL KTY +GH AL+ V L+I KGEILALLGPNGAGKTTLIS ICG+V+ +SG+V VDGH I +RHTRS IGLVPQEL+LGAFD VW+TVSFSRGLFG +PAY+E+LLK L+LWDKKD+ LM LSGGMKRRVLIAKALSHEP VLFLDEPTAGVDVEL K Sbjct: 4 IISIVDLCKTYDSGHQALKSVNLEIKKGEILALLGPNGAGKTTLISTICGLVSPTSGTVTVDGHDIIKDFRHTRSCIGLVPQELSLGAFDKVWDTVSFSRGLFGKKPNPAYIEQLLKDLTLWDKKDSELMRLSGGMKRRVLIAKALSHEPSVLFLDEPTAGVDVELRK 171
BLAST of abc transporter vs. nr
Match: gi|1054020431|ref|WP_066130944.1| (ABC transporter ATP-binding protein [Bordetella ansorpii] >gi|1018537617|emb|SAI72303.1| ABC transporter ATP-binding protein [Bordetella ansorpii]) HSP 1 Score: 261.536 bits (667), Expect = 1.855e-84 Identity = 123/168 (73.21%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ LSK Y +GH AL+ + LDI +GEI ALLGPNGAGKTTLISIICGIVNAS G+V+ DGH I YR R AIGLVPQELT AF+TVWNTV+FSRGLFGMP +PA++EK+L+ LSLWDKKD +M LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 VISVQGLSKQYKSGHQALKNINLDIRRGEIFALLGPNGAGKTTLISIICGIVNASQGTVLADGHDIGANYREARKAIGLVPQELTTDAFETVWNTVTFSRGLFGMPPNPAHVEKVLRDLSLWDKKDTRIMALSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|490509858|ref|WP_004375874.1| (ABC transporter ATP-binding protein [Thauera phenylacetica] >gi|479307331|gb|ENO95431.1| ABC transporter [Thauera phenylacetica B4P]) HSP 1 Score: 261.536 bits (667), Expect = 2.267e-84 Identity = 125/168 (74.40%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY++G +AL+GV LDI +GEI ALLGPNGAGKTTLIS++CG+VNAS+G+V VDGH I YR R+ IGLVPQELT AF+TVWNTVSFSRGLFG P DPAYLE+LLK LSLW K+D LM LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 IISISALSKTYASGFSALKGVDLDIRRGEIFALLGPNGAGKTTLISVVCGLVNASAGTVRVDGHDIVRDYRAARALIGLVPQELTTDAFETVWNTVSFSRGLFGKPPDPAYLEQLLKDLSLWAKRDAKLMMLSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|1126156221|ref|WP_075160179.1| (ABC transporter ATP-binding protein [Paraburkholderia sp. SOS3] >gi|1125917345|gb|APR39008.1| multidrug ABC transporter ATP-binding protein [Paraburkholderia sp. SOS3]) HSP 1 Score: 260.766 bits (665), Expect = 3.271e-84 Identity = 123/168 (73.21%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+++LSKTY++G AL+G+ L I +GEI ALLGPNGAGKTTLISI+CGIV AS+GSV+VDGH I YR R IGLVPQELT AF+TVW TVSFSRGLFG PK+PAY+EK+L+ LSLW+K+DN +M LSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVEL + Sbjct: 4 IISISNLSKTYASGFHALKGINLSIGRGEIFALLGPNGAGKTTLISIVCGIVRASAGSVVVDGHDIQHDYRAARELIGLVPQELTTDAFETVWATVSFSRGLFGKPKNPAYIEKVLRDLSLWEKRDNRIMTLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|893711675|ref|WP_048939938.1| (ABC transporter ATP-binding protein [Bordetella hinzii]) HSP 1 Score: 260.766 bits (665), Expect = 4.244e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 15 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 182
BLAST of abc transporter vs. nr
Match: gi|501580647|ref|WP_012584971.1| (MULTISPECIES: ABC transporter ATP-binding protein [Thauera] >gi|217507079|gb|ACK54090.1| ABC transporter related [Thauera sp. MZ1T] >gi|752199397|gb|KIN91116.1| ABC transporter family protein [Thauera sp. SWB20]) HSP 1 Score: 261.536 bits (667), Expect = 4.337e-84 Identity = 126/168 (75.00%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY++G +AL+GV LDI +GEI ALLGPNGAGKTTLISI+CG+VNASSGSV VDGH I YR R+ +GLVPQELT AF+TVWNTVSF+RGLFG P DPAY+E+LLK LSLW KKD LM LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 IISISALSKTYASGFSALKGVDLDIRRGEIFALLGPNGAGKTTLISIVCGLVNASSGSVRVDGHDIVRDYRAARALVGLVPQELTTDAFETVWNTVSFTRGLFGKPPDPAYIEQLLKDLSLWAKKDARLMMLSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|916987706|ref|WP_051594418.1| (ABC transporter ATP-binding protein [Bordetella hinzii]) HSP 1 Score: 260.766 bits (665), Expect = 4.433e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 15 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 182
BLAST of abc transporter vs. nr
Match: gi|1054652997|ref|WP_066420489.1| (ABC transporter ATP-binding protein [Bordetella ansorpii] >gi|1018186674|emb|SAI57941.1| ABC transporter ATP-binding protein [Bordetella ansorpii]) HSP 1 Score: 260.381 bits (664), Expect = 4.586e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ LSK Y +GH AL+ + LDI +GEI ALLGPNGAGKTTLISIICGIVNAS G+V+ DGH I YR R AIGLVPQELT AF+TVWNTV+FSRGLFGMP +PA++EK+L+ LSLW+KKD +M LSGGMKRRVLIAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 4 VISVQGLSKQYKSGHQALKNINLDIRRGEIFALLGPNGAGKTTLISIICGIVNASQGTVLADGHDIGANYREARKAIGLVPQELTTDAFETVWNTVTFSRGLFGMPPNPAHIEKVLRDLSLWEKKDTRIMALSGGMKRRVLIAKALSHEPRILFLDEPTAGVDVELRR 171
BLAST of abc transporter vs. nr
Match: gi|890882591|gb|AKQ59271.1| (putative ABC transporter ATP-binding protein YbhF [Bordetella hinzii]) HSP 1 Score: 260.381 bits (664), Expect = 4.785e-84 Identity = 122/168 (72.62%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S+ DLSK Y++GH AL+ + L+I +GEI ALLGPNGAGKTTLISIICGIVNASSG V+ DGH YR R AIGLVPQELT AF+TVWNTVSFSRGLFG P DPA +E++L+ LSLWDKKD+ +M LSGGMKRRV+IAKALSHEPR+LFLDEPTAGVDVEL + Sbjct: 6 VISVQDLSKIYASGHQALKNINLEIRRGEIFALLGPNGAGKTTLISIICGIVNASSGRVLADGHDNVKAYRAARQAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRR 173
BLAST of abc transporter vs. nr
Match: gi|1055575037|ref|WP_067217254.1| (ABC transporter ATP-binding protein [Stappia indica] >gi|1247743151|emb|SOB89281.1| ABC-2 type transport system ATP-binding protein [Stappia indica]) HSP 1 Score: 259.996 bits (663), Expect = 5.466e-84 Identity = 127/168 (75.60%), Postives = 143/168 (85.12%), Query Frame = 0 Query: 5 LMSLADLSKTYSTGHTALQGVTLDIAKGEILALLGPNGAGKTTLISIICGIVNASSGSVIVDGHSITDGYRHTRSAIGLVPQELTLGAFDTVWNTVSFSRGLFGMPKDPAYLEKLLKQLSLWDKKDNILMHLSGGMKRRVLIAKALSHEPRVLFLDEPTAGVDVELAK 172 ++S++ LSKTY TG AL+ V+LDI KGE+ ALLGPNGAGKTTLISI+CGIVNASSGSV VDG+ I YR RS IGLVPQELT AF+TVW TVSFSRGLFG PK PA +EK+L+ LSLWDKKDN L+ LSGGMKRRVLIAKAL+HEPRVLFLDEPTAGVDVEL + Sbjct: 4 ILSISGLSKTYDTGFQALKSVSLDIEKGEVFALLGPNGAGKTTLISIVCGIVNASSGSVTVDGNDIVRDYRAARSLIGLVPQELTTDAFETVWATVSFSRGLFGKPKAPAIVEKVLRDLSLWDKKDNKLVTLSGGMKRRVLIAKALAHEPRVLFLDEPTAGVDVELRR 171 The following BLAST results are available for this feature:
BLAST of abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 16
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BLAST of abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:674010..675554+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1_size3401120-snap-gene-6.39 ID=maker-scaffold1_size3401120-snap-gene-6.39|Name=abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1545bp|location=Sequence derived from alignment at scaffold1_size3401120:674010..675554+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc transporter' has the following synonyms
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