upf0184 protein c9orf16 homolog, maker-scaffold2199_size18937-snap-gene-0.3 (gene) Tigriopus kingsejongensis

Overview
Nameupf0184 protein c9orf16 homolog
Unique Namemaker-scaffold2199_size18937-snap-gene-0.3
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of upf0184 protein c9orf16 homolog vs. SwissProt
Match: gi|122136471|sp|Q2NKS9.1|CI016_BOVIN (RecName: Full=UPF0184 protein C9orf16 homolog)

HSP 1 Score: 51.6026 bits (122), Expect = 2.672e-8
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   94 EAEEEDFDQAAYAALDRQLDALDRALDNIEERNDNLHGQLKGLLETDPPGR 144
            E EE+ F +A YAA++  LD ++  LD++EE+ND+LH +L+ LLE++   R
Sbjct:   17 EGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTR 67
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BLAST of upf0184 protein c9orf16 homolog vs. SwissProt
Match: gi|20137930|sp|Q9BUW7.1|CI016_HUMAN (RecName: Full=UPF0184 protein C9orf16)

HSP 1 Score: 51.2174 bits (121), Expect = 3.097e-8
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   94 EAEEEDFDQAAYAALDRQLDALDRALDNIEERNDNLHGQLKGLLETDPPGR 144
            E EE+ F +A YAA++  LD ++  LD++EE+ND+LH +L+ LLE++   R
Sbjct:   17 EGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTR 67
[Close]
BLAST of upf0184 protein c9orf16 homolog vs. SwissProt
Match: gi|20137739|sp|P58686.1|CI016_MOUSE (RecName: Full=UPF0184 protein C9orf16 homolog)

HSP 1 Score: 49.6766 bits (117), Expect = 1.442e-7
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 0 
Query:   94 EAEEEDFDQAAYAALDRQLDALDRALDNIEERNDNLHGQLKGLLETDPPGR 144
            E E + F +A YAA++  LD ++  LD++EE+ND+LH +L+ LLE++   R
Sbjct:   17 EGENDSFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTR 67
The following BLAST results are available for this feature:
BLAST of upf0184 protein c9orf16 homolog vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of upf0184 protein c9orf16 homolog vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
gi|122136471|sp|Q2NKS9.1|CI016_BOVIN2.672e-845.10RecName: Full=UPF0184 protein C9orf16 homolog[more]
gi|20137930|sp|Q9BUW7.1|CI016_HUMAN3.097e-845.10RecName: Full=UPF0184 protein C9orf16[more]
gi|20137739|sp|P58686.1|CI016_MOUSE1.442e-743.14RecName: Full=UPF0184 protein C9orf16 homolog[more]
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BLAST of upf0184 protein c9orf16 homolog vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2199_size18937supercontigscaffold2199_size18937:18007..18667 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold2199_size18937-snap-gene-0.3-mRNA-1maker-scaffold2199_size18937-snap-gene-0.3-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2199_size18937:18007..18667-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold2199_size18937-snap-gene-0.3 ID=maker-scaffold2199_size18937-snap-gene-0.3|Name=upf0184 protein c9orf16 homolog|organism=Tigriopus kingsejongensis|type=gene|length=661bp|location=Sequence derived from alignment at scaffold2199_size18937:18007..18667- (Tigriopus kingsejongensis)
ATGGCCCGGCCGGAACAGCCCACACCGCCCGCCTACCTCGCCTGGGGCTC
CATTGGCATCATTAGCAGCGTGACCGGCGCTTCGCCCCCCGACTGGCCCC
ACTCGCCCTCACCCTGTGCCCAGCCCCGAGACCCGCGGGCCCGAAACCTC
CCACTGACCACCGGAAGCATGGCCCCCAGCTTTTGCCCCGAGGATCTGCC
CGAAGAGAACCCGGAGCGTGGTCCAGCCGCTGAGGCCGTCCCACCCCCCG
CGGCCCCCGAGCCGGAGCGCGAAGAAGAGGAGGCCGAAGAGGAGGACTTC
GACCAGGCGGGTGAGAGCGAGGGCTGAAACGCCCCTGGGCGCGAGCCAGG
TTCGGGCGAGCAATATCGCATTGGCTTCGACTTGCAGCGTATGCCGCTTT
GGATCGTCAACTGGACGCCTTGGACCGGGCCCTGGACAACATTGAAGAGC
GCAACGACAACCTCCACGGGCAGCTCAAAGGGCTGCTCGAAACGGACCCC
CCGGGTCGAGATGGATCGGCCCGCCCCGAGACGGGCCCGAGTGGACCGGC
CTAGGGCGCGGATGGACGTTGTTCTTCACCCTTCATGCTATTGTCAGATA
GTCTTATGCCAATGTAATGTATTTGAAAATTAAAGTCATGGTATGGACCG
TGTCCGTCAAA
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Synonyms
The feature 'upf0184 protein c9orf16 homolog' has the following synonyms
Synonym
Tk00521
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