60s ribosomal protein l34, maker-scaffold22_size673200-snap-gene-1.18 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 60s ribosomal protein l34 vs. L. salmonis genes
Match: EMLSAG00000009114 (supercontig:LSalAtl2s:LSalAtl2s574:423422:423778:1 gene:EMLSAG00000009114 transcript:EMLSAT00000009114 description:"augustus_masked-LSalAtl2s574-processed-gene-4.1") HSP 1 Score: 176.022 bits (445), Expect = 7.873e-59 Identity = 83/108 (76.85%), Postives = 99/108 (91.67%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAK 108 MVQRI RRRLSYNT+SNRRK+ RTPGG+LVFQYLKKRPSVPKCPMTG++LKGIKP+RP++R RL R +KVYRAYGGVLSH+AV+EKI+RAFLIEE+K+VMK+ K + Sbjct: 1 MVQRIXXRRRLSYNTKSNRRKVIRTPGGKLVFQYLKKRPSVPKCPMTGLRLKGIKPSRPADRKRLYKRERKVYRAYGGVLSHQAVKEKIIRAFLIEEEKMVMKLKKTQ 108
BLAST of 60s ribosomal protein l34 vs. SwissProt
Match: gi|254802243|sp|B1YAJ9.1|RL34_PYRNV (RecName: Full=50S ribosomal protein L34e) HSP 1 Score: 56.225 bits (134), Expect = 1.279e-10 Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 10 RLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKI 89 R +Y +RS RR RTPGGR Y K+ P+CP+TG+ + G+ + R + ++ R YGGV SHKA+ I Sbjct: 3 RPAYRSRSVRRIKVRTPGGRTAVHYEKRAKGAPRCPITGLAIGGMN----KKIYRFGVSNRAPTRPYGGVFSHKALARAI 78
BLAST of 60s ribosomal protein l34 vs. SwissProt
Match: gi|20455226|sp|Q8ZTJ2.1|RL34_PYRAE (RecName: Full=50S ribosomal protein L34e) HSP 1 Score: 55.4546 bits (132), Expect = 2.341e-10 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0 Query: 10 RLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAV 85 R +Y +RS RR +TPGGR V Y K+ VPKCP+TG+ + G+ + R ++ + R YGGV SHK + Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKCPITGLPIGGMN----KKVYRFGIKIRAPSRPYGGVYSHKVL 74
BLAST of 60s ribosomal protein l34 vs. SwissProt
Match: gi|254801895|sp|A1RRJ4.1|RL34_PYRIL (RecName: Full=50S ribosomal protein L34e) HSP 1 Score: 54.6842 bits (130), Expect = 5.433e-10 Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 0 Query: 10 RLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAV 85 R +Y +RS RR RTPGGR V Y K+ VPKCP+T + L G+ + R + + R YGGV SHK + Sbjct: 3 RPAYRSRSLRRVKVRTPGGRTVVHYEKRAKGVPKCPVTNLPLGGMN----HKVYRFGISIRAPSRPYGGVFSHKVL 74
BLAST of 60s ribosomal protein l34 vs. SwissProt
Match: gi|166231110|sp|A3MV68.1|RL34_PYRCJ (RecName: Full=50S ribosomal protein L34e) HSP 1 Score: 53.9138 bits (128), Expect = 1.119e-9 Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 10 RLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKI 89 R +Y +RS RR +TPGGR V Y K+ VPKC +TG L G+ S+ R + + R YGGV+SHK + I Sbjct: 3 RPAYRSRSLRRVKVKTPGGRTVVHYEKRAKGVPKCAVTGQPLGGMN----SKVYRFGISTRAPSRPYGGVVSHKVLARAI 78
BLAST of 60s ribosomal protein l34 vs. SwissProt
Match: gi|23822067|sp|Q8TZB2.1|RL34_METKA (RecName: Full=50S ribosomal protein L34e) HSP 1 Score: 53.5286 bits (127), Expect = 2.892e-9 Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 0 Query: 13 YNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKI 89 Y +RS RR RTPGGR V + KK P+ PKC G +L G+ R E K+ R YGGVL + R+ I Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVELKNAPKTQKRPNRPYGGVLCPECARKLI 82
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|961376494|gb|ALS04991.1| (60S ribosomal protein L34 [Calanus sinicus]) HSP 1 Score: 189.504 bits (480), Expect = 2.048e-60 Identity = 92/110 (83.64%), Postives = 102/110 (92.73%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGK 110 MVQRITYRRRLSYNT+SN+RK RTPGG+LVFQYLKKRP++PKCPMTG+KLKGIKPA E++RLS R K VYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKV+KA+GK Sbjct: 1 MVQRITYRRRLSYNTKSNKRKTVRTPGGKLVFQYLKKRPTLPKCPMTGLKLKGIKPATNQEKTRLSRRQKTVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVLKAQGK 110
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|225708952|gb|ACO10322.1| (60S ribosomal protein L34 [Caligus rogercresseyi]) HSP 1 Score: 189.119 bits (479), Expect = 4.392e-60 Identity = 90/112 (80.36%), Postives = 105/112 (93.75%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGKAS 112 MVQRITYRRRLSYNTRSNRRKI RTPGG+LVFQYLKKRPSVPKCPMTG++LKGIKP+RP+ER RLSLR KKV+RAYGGVLSH AV+EKI+RAFL+EE+K+VMK+ K++ A+ Sbjct: 1 MVQRITYRRRLSYNTRSNRRKIIRTPGGKLVFQYLKKRPSVPKCPMTGLRLKGIKPSRPAERKRLSLRQKKVFRAYGGVLSHMAVKEKIIRAFLLEEEKMVMKLKKSEALAA 112
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|225717652|gb|ACO14672.1| (60S ribosomal protein L34 [Caligus clemensi]) HSP 1 Score: 186.808 bits (473), Expect = 3.454e-59 Identity = 89/112 (79.46%), Postives = 105/112 (93.75%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGKAS 112 MVQRITYRRRLSYNTRSNRRK+ RTPGG+LVFQYLKKRPSVPKCPMTG+KLKGIKP+RP+ER RLS R KKVYRAYGGVLSH+AV+EKI+RAFL+EE+K+V+K+ K++ A+ Sbjct: 1 MVQRITYRRRLSYNTRSNRRKVIRTPGGKLVFQYLKKRPSVPKCPMTGLKLKGIKPSRPAERKRLSRRQKKVYRAYGGVLSHQAVKEKIIRAFLLEEEKMVVKLKKSQQLAT 112
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|1325313041|ref|XP_023338175.1| (60S ribosomal protein L34-like [Eurytemora affinis]) HSP 1 Score: 186.037 bits (471), Expect = 5.991e-59 Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGKASME 114 MVQRITYRRRLSYNTRSNR K RTPGG+LVFQYLKKRPSVPKCPMTG++LKG+KPA E+SR+S R K VYRAYGGVLSH AVREKIVRAFLIEEQKIVMKV+KA+G E Sbjct: 1 MVQRITYRRRLSYNTRSNRTKTVRTPGGKLVFQYLKKRPSVPKCPMTGLRLKGVKPATNQEKSRMSKRLKTVYRAYGGVLSHSAVREKIVRAFLIEEQKIVMKVLKAQGGGKKE 114
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|961376032|gb|ALS04760.1| (60S ribosomal protein L34 [Pseudodiaptomus poplesia]) HSP 1 Score: 181.8 bits (460), Expect = 2.673e-57 Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGK 110 MVQRITYRRRLSYNTRSNR K RTPGG+LVFQYLKKRPSVPKCP+TG+KLKG+KPA E++R+S R K VYRAYGGVLSH AVR+KI+RAFLIEEQK+V+KV+KA+GK Sbjct: 1 MVQRITYRRRLSYNTRSNRVKTVRTPGGKLVFQYLKKRPSVPKCPVTGLKLKGVKPATNQEKARMSKRQKTVYRAYGGVLSHTAVRDKIIRAFLIEEQKMVLKVLKARGK 110
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|225714318|gb|ACO13005.1| (60S ribosomal protein L34 [Lepeophtheirus salmonis]) HSP 1 Score: 181.415 bits (459), Expect = 4.209e-57 Identity = 85/108 (78.70%), Postives = 101/108 (93.52%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAK 108 MVQRITYRRRLSYNT+SNRRK+ RTPGG+LVFQYLKKRPSVPKCPMTG++LKGIKP+RP++R RL R +KVYRAYGGVLSH+AV+EKI+RAFLIEE+K+VMK+ K + Sbjct: 1 MVQRITYRRRLSYNTKSNRRKVIRTPGGKLVFQYLKKRPSVPKCPMTGLRLKGIKPSRPADRKRLYKRERKVYRAYGGVLSHQAVKEKIIRAFLIEEEKMVMKLKKTQ 108
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|961375416|gb|ALS04452.1| (60S ribosomal protein L34 [Acartia pacifica]) HSP 1 Score: 180.644 bits (457), Expect = 8.550e-57 Identity = 89/110 (80.91%), Postives = 100/110 (90.91%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGK 110 MVQRITYRRRLSYNTRSNR K RTPGG+LVFQYLKKRPSVPKCP+TG+K+KG+KPA E++R+S R K V R+YGGVLSH+AVR+KIVRAFLIEEQKIVMKVMKAKGK Sbjct: 1 MVQRITYRRRLSYNTRSNRVKKVRTPGGKLVFQYLKKRPSVPKCPVTGLKIKGVKPATNQEKTRMSKRLKTVSRSYGGVLSHQAVRDKIVRAFLIEEQKIVMKVMKAKGK 110
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|961375414|gb|ALS04451.1| (60S ribosomal protein L34 [Acartia pacifica]) HSP 1 Score: 179.489 bits (454), Expect = 2.320e-56 Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKAKGK 110 MVQRITYRRRLSYNTRSN+ K RTPGG+LVFQYLKKRPSVPKCP+TG+K+KG+KPA E++R+S R K V R+YGGVLSH+AVR+KIVRAFLIEEQKIVMKVMKAKGK Sbjct: 1 MVQRITYRRRLSYNTRSNQVKKVRTPGGKLVFQYLKKRPSVPKCPVTGLKIKGVKPATNQEKTRMSKRLKTVSRSYGGVLSHQAVRDKIVRAFLIEEQKIVMKVMKAKGK 110
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|961375794|gb|ALS04641.1| (60S ribosomal protein L34 [Pseudodiaptomus poplesia]) HSP 1 Score: 177.178 bits (448), Expect = 2.056e-55 Identity = 89/111 (80.18%), Postives = 99/111 (89.19%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKA-KGK 110 MVQRITYRRRLSYNT+SN+RK RTPGGRLVFQYLKKRP+VPKCPMTG++LKG++PA E+ R+S R K V RAYGGVLSH AVREKI+RAFLIEEQKIVMKVMKA KGK Sbjct: 1 MVQRITYRRRLSYNTKSNKRKTVRTPGGRLVFQYLKKRPNVPKCPMTGVRLKGVRPAINQEKMRMSKRLKTVSRAYGGVLSHSAVREKIIRAFLIEEQKIVMKVMKAQKGK 111
BLAST of 60s ribosomal protein l34 vs. nr
Match: gi|1148369162|gb|AQS22817.1| (60S ribosomal protein l34 [Pseudodiaptomus poplesia]) HSP 1 Score: 176.792 bits (447), Expect = 2.345e-55 Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 0 Query: 1 MVQRITYRRRLSYNTRSNRRKITRTPGGRLVFQYLKKRPSVPKCPMTGIKLKGIKPARPSERSRLSLRHKKVYRAYGGVLSHKAVREKIVRAFLIEEQKIVMKVMKA-KGK 110 MVQRITYRRRLSYNT+SN+RK RTPGG+LVFQYLKKRP+VPKCPMTG++LKG++PA E+ R+S R K V RAYGGVLSH AVREKI+RAFLIEEQKIVMKVMKA KGK Sbjct: 1 MVQRITYRRRLSYNTKSNKRKTVRTPGGKLVFQYLKKRPNVPKCPMTGVRLKGVRPATNQEKMRMSKRLKTVSRAYGGVLSHSAVREKIIRAFLIEEQKIVMKVMKAQKGK 111 The following BLAST results are available for this feature:
BLAST of 60s ribosomal protein l34 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 60s ribosomal protein l34 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of 60s ribosomal protein l34 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold22_size673200:175704..178566+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold22_size673200-snap-gene-1.18 ID=maker-scaffold22_size673200-snap-gene-1.18|Name=60s ribosomal protein l34|organism=Tigriopus kingsejongensis|type=gene|length=2863bp|location=Sequence derived from alignment at scaffold22_size673200:175704..178566+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '60s ribosomal protein l34' has the following synonyms
Add to Basket
|