pre-mrna polyadenylation factor fip1 isoform x2, maker-scaffold2629_size13770-snap-gene-0.3 (gene) Tigriopus kingsejongensis

Overview
Namepre-mrna polyadenylation factor fip1 isoform x2
Unique Namemaker-scaffold2629_size13770-snap-gene-0.3
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. L. salmonis genes
Match: EMLSAG00000007188 (supercontig:LSalAtl2s:LSalAtl2s404:336664:338091:-1 gene:EMLSAG00000007188 transcript:EMLSAT00000007188 description:"maker-LSalAtl2s404-augustus-gene-3.42")

HSP 1 Score: 205.682 bits (522), Expect = 7.206e-61
Identity = 123/272 (45.22%), Postives = 162/272 (59.56%), Query Frame = 0 
Query:  163 IKISIDHNKIDETKTSYQH----FGLNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLT--PSI-------LSSLSSNHAP---KRLPTVLNRA---------------PVMSELAKPVPPGPISVLTGDKRADYQQKMISGIDFSRPPPGLP--PT-----NLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDAPP 396
             +I+ID NKI+E K+SY +    FG+  +       EKKGKF+V++ DQVG +NG PA + DI++ ++KPWK+PGADITDYFNYGFTEETWQAYC RQRK+R+GE+GV MPG  N I++  S++  PS        + +L SN       R+PT LN +                  +    P  P  I+V+T DKR +Y +K+IS IDFS PPPG+   PT     N+  P    P     EF  E+PF    +  GGYEPTME+QW APP
Sbjct:   71 FRITIDQNKIEEAKSSYSNASASFGVKNRNVHT---EKKGKFSVDELDQVGNINGVPAHELDIDSLDEKPWKKPGADITDYFNYGFTEETWQAYCNRQRKMRVGESGVGMPGINNTIVTNKSISTNPSFPLNQNNSIPTLGSNQVKPIVNRIPTTLNGSNNASQPSPLPPPQAPTTAAATTVPPVPSSIAVMTHDKR-EYSKKVISEIDFSVPPPGMTGIPTVGTTPNVKLPPPPIPHIPPGEFPQEDPFDYPSYSGGGYEPTMEAQWTAPP 338
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|75041862|sp|Q5RAA7.1|FIP1_PONAB (RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; AltName: Full=FIP1-like 1 protein)

HSP 1 Score: 100.523 bits (249), Expect = 3.666e-21
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 0 
Query:  169 HNKIDETKTSYQHFG--------LNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIIS 277
            H  I + KT    +G        LN KT     G    K    D D  G++NG P  + D+++ EDKPW++PGAD++DYFNYGF E+TW+AYC +Q+++RMG   + +   TN I +
Sbjct:   82 HVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITA 198
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|74749365|sp|Q6UN15.1|FIP1_HUMAN (RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; Short=hFip1; AltName: Full=FIP1-like 1 protein; AltName: Full=Factor interacting with PAP; AltName: Full=Rearranged in hypereosinophilia)

HSP 1 Score: 100.523 bits (249), Expect = 3.832e-21
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 0 
Query:  169 HNKIDETKTSYQHFG--------LNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIIS 277
            H  I + KT    +G        LN KT     G    K    D D  G++NG P  + D+++ EDKPW++PGAD++DYFNYGF E+TW+AYC +Q+++RMG   + +   TN I +
Sbjct:   97 HVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITA 213
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|81883542|sp|Q5U317.1|FIP1_RAT (RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; AltName: Full=FIP1-like 1 protein)

HSP 1 Score: 98.5969 bits (244), Expect = 1.134e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 0 
Query:  169 HNKIDETKTSYQHFG--------LNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNI 275
            H  I + KT    +G        LN K      G    K    D D  G++NG P  + D+++ EDKPW++PGAD++DYFNYGF E+TW+AYC +Q+++RMG   + +   TN I
Sbjct:   96 HVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVYGNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKI 210
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|81881579|sp|Q9D824.1|FIP1_MOUSE (RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; AltName: Full=FIP1-like 1 protein)

HSP 1 Score: 98.5969 bits (244), Expect = 1.282e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 0 
Query:  169 HNKIDETKTSYQHFG--------LNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNI 275
            H  I + KT    +G        LN K      G    K    D D  G++NG P  + D+++ EDKPW++PGAD++DYFNYGF E+TW+AYC +Q+++RMG   + +   TN I
Sbjct:   96 HVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVYGNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKI 210
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|82180600|sp|Q5XJD3.1|FIP1_DANRE (RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; AltName: Full=FIP1-like 1 protein)

HSP 1 Score: 91.6633 bits (226), Expect = 2.286e-18
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0 
Query:  184 LNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIIS 277
            LN K+A +       K    D +  G++NG P  + D+E+ E+KPW++PGAD++DYFNYGF E+TW+AYC +Q++LRMG   V   G T + IS
Sbjct:  129 LNIKSAGSRAYGAGAKVKGVDLEAPGSINGVPVLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRLRMG-LDVLNIGSTTSKIS 221
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|74634030|sp|Q6C784.1|FIP1_YARLI (RecName: Full=Pre-mRNA polyadenylation factor FIP1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-16
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0 
Query:  204 DFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLR 260
            D ++VG ++G P  ++++E  EDKPW+ PGADITDYFNYGF E TW AYC +Q ++R
Sbjct:  115 DIEKVGMLDGKPITEHNLEDFEDKPWRMPGADITDYFNYGFDEFTWMAYCDKQNQIR 171
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|1175470|sp|Q09801.1|FIP1X_SCHPO (RecName: Full=Pre-mRNA polyadenylation factor fip1)

HSP 1 Score: 79.337 bits (194), Expect = 6.829e-15
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0 
Query:  204 DFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLR 260
            D D V T++G    + D+E+ +DKPW++PGADI+DYFNYGF E TW AYC +Q  LR
Sbjct:  106 DIDAVPTIDGKNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAYCAKQTTLR 162
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|218512046|sp|Q6BGR9.2|FIP1_DEBHA (RecName: Full=Pre-mRNA polyadenylation factor FIP1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.076e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:  204 DFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLR 260
            D + V  ++G P    D+E  +DKPW+ PGADI+DYFNYGF E TW AYC +Q KLR
Sbjct:  135 DINSVAQLDGKPLTQVDLEKLKDKPWRFPGADISDYFNYGFDEFTWTAYCCKQDKLR 191
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|74692232|sp|Q751K8.1|FIP1_ASHGO (RecName: Full=Pre-mRNA polyadenylation factor FIP1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.648e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:  204 DFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLR 260
            D + VG   G P  D D E  ++KPW+QPGA+++DYFNYGFTEETW  Y  +Q KLR
Sbjct:  159 DINAVGEYEGTPITDIDPEVLKEKPWRQPGANLSDYFNYGFTEETWMEYLHKQEKLR 215
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Match: gi|74608241|sp|Q6FJ55.1|FIP1_CANGA (RecName: Full=Pre-mRNA polyadenylation factor FIP1 [[Candida] glabrata CBS 138])

HSP 1 Score: 73.1738 bits (178), Expect = 6.007e-13
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 0 
Query:  204 DFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLR 260
            D D+ G  N  P    D E  ++KPW+QPGA+I+DYFNYGF E TW  Y  RQ KLR
Sbjct:  168 DLDKEGLYNDEPVSTIDPEVLKEKPWRQPGANISDYFNYGFNEYTWMEYLHRQEKLR 224
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1279714821|ref|XP_022901877.1| (pre-mRNA 3'-end-processing factor FIP1 isoform X4 [Onthophagus taurus])

HSP 1 Score: 150.214 bits (378), Expect = 1.888e-36
Identity = 92/235 (39.15%), Postives = 132/235 (56.17%), Query Frame = 0 
Query:  162 NIKISIDHNKIDETKTSYQHFGLNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSIL---SSLSSNHA-PKRLPTVLNRAPVMSELAKPVPPGPISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQW 392
            +IK S  +  ++  +        + KT +AP     GKF++++FDQ G++NG PA D+++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ++LRM E+GV +     N I  P     I+   S  S N++ P+ L T +  A    +  K      I V+T D+R           ++SR PPG P  ++PPP+FD   P        EPF       GGYEPT +SQW
Sbjct:  105 DIKTSPTYTSLNIKRGGLLTTTTSDKTKQAP----AGKFSIDEFDQPGSINGVPATDFNLDSLEDKPWRKPGADITDYFNYGFNEDTWKAYCERQKRLRMNESGVGL--APLNAIGMPRGPVPIMNDNSKYSGNYSTPRGLSTRMGSAAGKMDAPK---ENVIQVMTADRR-----------EYSRKPPGFPDMSMPPPNFDDFQPEYGFNPEPEPFY------GGYEPTQDSQW 313
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1279714819|ref|XP_022901876.1| (pre-mRNA 3'-end-processing factor FIP1 isoform X3 [Onthophagus taurus])

HSP 1 Score: 150.214 bits (378), Expect = 2.165e-36
Identity = 92/235 (39.15%), Postives = 132/235 (56.17%), Query Frame = 0 
Query:  162 NIKISIDHNKIDETKTSYQHFGLNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSIL---SSLSSNHA-PKRLPTVLNRAPVMSELAKPVPPGPISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQW 392
            +IK S  +  ++  +        + KT +AP     GKF++++FDQ G++NG PA D+++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ++LRM E+GV +     N I  P     I+   S  S N++ P+ L T +  A    +  K      I V+T D+R           ++SR PPG P  ++PPP+FD   P        EPF       GGYEPT +SQW
Sbjct:  105 DIKTSPTYTSLNIKRGGLLTTTTSDKTKQAP----AGKFSIDEFDQPGSINGVPATDFNLDSLEDKPWRKPGADITDYFNYGFNEDTWKAYCERQKRLRMNESGVGL--APLNAIGMPRGPVPIMNDNSKYSGNYSTPRGLSTRMGSAAGKMDAPK---ENVIQVMTADRR-----------EYSRKPPGFPDMSMPPPNFDDFQPEYGFNPEPEPFY------GGYEPTQDSQW 313
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|91084047|ref|XP_967260.1| (PREDICTED: pre-mRNA polyadenylation factor FIP1 isoform X2 [Tribolium castaneum] >gi|270006693|gb|EFA03141.1| hypothetical protein TcasGA2_TC013053 [Tribolium castaneum])

HSP 1 Score: 147.132 bits (370), Expect = 2.256e-35
Identity = 93/238 (39.08%), Postives = 130/238 (54.62%), Query Frame = 0 
Query:  172 IDETKTSYQHFGLNPK-----TARAPPGEKK-----GKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKP----SLTPSILSSLSSNHAPKRLPTVLNRAPVMSELAKPVPPGPISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPH-FDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDA 394
            I + KT+  +  LN K     T  AP  + K     GKF+VE+FDQ G +NG PA +Y++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ+++RM E+GV +  Q  +I   P     +T SI   +    A +  PT + +        +P     I V+T D+R           ++SR P G P  ++PPP+ F+   P        EPF       GGYEPT +SQW A
Sbjct:  100 IGDIKTTPSYTSLNIKRSGLLTTTAPVDKSKQPPQPGKFSVEEFDQAGMINGVPATEYNLDSLEDKPWRKPGADITDYFNYGFNEDTWRAYCERQKRMRMTESGVGLAAQMTSIARGPPPGRRMTGSI--DVIGGTAQRSTPTPIGK-------VEPPKMNVIQVMTADRR-----------EYSRKPTGFPDMSVPPPNTFEDFQPEYGFNPEPEPF------YGGYEPTQDSQWGA 311
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|157117959|ref|XP_001653120.1| (pre-mRNA 3'-end-processing factor FIP1 [Aedes aegypti] >gi|108875915|gb|EAT40140.1| AAEL008100-PA [Aedes aegypti] >gi|122937768|gb|ABM68607.1| AAEL008100-PA [Aedes aegypti])

HSP 1 Score: 145.976 bits (367), Expect = 4.369e-34
Identity = 88/227 (38.77%), Postives = 127/227 (55.95%), Query Frame = 0 
Query:  186 PKTARAPPGEKK-----GKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSILSSLSSNHAPKRLPTVLNRAPVMSELAKP------VPPGP----ISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDAPPS 397
            P+ A+A PG+ K     GKF++E+F+ VGT+NG PA ++ I++ E+KPW++PGADITDYFNYGF EETW+AYC RQ+++RM E+GV + G T   I+ P    +  +       P+++   ++    MS   +P      +P  P    I V+T D+R           ++SR          PPP F APP    +F   EP    D+   GYEPT ESQW+  P+
Sbjct:  164 PQVAQAAPGQDKAKQPAGKFSIEEFESVGTINGVPAHEFSIDSLEEKPWRKPGADITDYFNYGFNEETWRAYCERQKRMRMHESGVGLQGLT---INNPQAAQAQNNWRQGPPPPRKMNNGIDVIGGMSMHPRPEHGPDMMPRHPKENIIQVMTADRR-----------EYSRSASKFDSPMGPPP-FGAPP----DFYHNEP----DYGDYGYEPTQESQWNQEPN 367
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|642924819|ref|XP_008194054.1| (PREDICTED: pre-mRNA 3'-end-processing factor FIP1 isoform X1 [Tribolium castaneum])

HSP 1 Score: 143.28 bits (360), Expect = 7.363e-34
Identity = 92/251 (36.65%), Postives = 131/251 (52.19%), Query Frame = 0 
Query:  172 IDETKTSYQHFGLNPK-----TARAPPGEKK-----GKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSILSSLSSNHA---------PKRLPTVLNRAPVMSELAKPVPPGP--------ISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPH-FDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDA 394
            I + KT+  +  LN K     T  AP  + K     GKF+VE+FDQ G +NG PA +Y++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ+++RM E+GV +  Q  +I        +  S  S N            +R+   ++     ++ + P P G         I V+T D+R           ++SR P G P  ++PPP+ F+   P        EPF       GGYEPT +SQW A
Sbjct:  100 IGDIKTTPSYTSLNIKRSGLLTTTAPVDKSKQPPQPGKFSVEEFDQAGMINGVPATEYNLDSLEDKPWRKPGADITDYFNYGFNEDTWRAYCERQKRMRMTESGVGLAAQMTSIARGTVPIMNDNSKYSGNFLGMRKAGPPPGRRMTGSIDVIGGTAQRSTPTPIGKVEPPKMNVIQVMTADRR-----------EYSRKPTGFPDMSVPPPNTFEDFQPEYGFNPEPEPF------YGGYEPTQDSQWGA 333
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1279714815|ref|XP_022901873.1| (pre-mRNA 3'-end-processing factor FIP1 isoform X1 [Onthophagus taurus])

HSP 1 Score: 142.51 bits (358), Expect = 1.977e-33
Identity = 90/250 (36.00%), Postives = 131/250 (52.40%), Query Frame = 0 
Query:  162 NIKISIDHNKIDETKTSYQHFGLNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSIL---SSLSSNHAPKR-------------LPTVLNRAPVMSELAKPVPP---GPISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQW 392
            +IK S  +  ++  +        + KT +AP     GKF++++FDQ G++NG PA D+++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ++LRM E+GV +     N I  P     I+   S  S N++  R             +  +   +  M   A  +       I V+T D+R           ++SR PPG P  ++PPP+FD   P        EPF       GGYEPT +SQW
Sbjct:  105 DIKTSPTYTSLNIKRGGLLTTTTSDKTKQAP----AGKFSIDEFDQPGSINGVPATDFNLDSLEDKPWRKPGADITDYFNYGFNEDTWKAYCERQKRLRMNESGVGL--APLNAIGMPRGPVPIMNDNSKYSGNYSTPRKAGPPPGRRMTGSIDVIGGLSTRMGSAAGKMDAPKENVIQVMTADRR-----------EYSRKPPGFPDMSMPPPNFDDFQPEYGFNPEPEPFY------GGYEPTQDSQW 331
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1279714817|ref|XP_022901874.1| (pre-mRNA 3'-end-processing factor FIP1 isoform X2 [Onthophagus taurus])

HSP 1 Score: 142.124 bits (357), Expect = 2.627e-33
Identity = 90/250 (36.00%), Postives = 131/250 (52.40%), Query Frame = 0 
Query:  162 NIKISIDHNKIDETKTSYQHFGLNPKTARAPPGEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSIL---SSLSSNHAPKR-------------LPTVLNRAPVMSELAKPVPP---GPISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQW 392
            +IK S  +  ++  +        + KT +AP     GKF++++FDQ G++NG PA D+++++ EDKPW++PGADITDYFNYGF E+TW+AYC RQ++LRM E+GV +     N I  P     I+   S  S N++  R             +  +   +  M   A  +       I V+T D+R           ++SR PPG P  ++PPP+FD   P        EPF       GGYEPT +SQW
Sbjct:  105 DIKTSPTYTSLNIKRGGLLTTTTSDKTKQAP----AGKFSIDEFDQPGSINGVPATDFNLDSLEDKPWRKPGADITDYFNYGFNEDTWKAYCERQKRLRMNESGVGL--APLNAIGMPRGPVPIMNDNSKYSGNYSTPRKAGPPPGRRMTGSIDVIGGLSTRMGSAAGKMDAPKENVIQVMTADRR-----------EYSRKPPGFPDMSMPPPNFDDFQPEYGFNPEPEPFY------GGYEPTQDSQW 331
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|328703305|ref|XP_001948038.2| (PREDICTED: pre-mRNA 3'-end-processing factor FIP1 [Acyrthosiphon pisum])

HSP 1 Score: 141.354 bits (355), Expect = 2.102e-32
Identity = 102/275 (37.09%), Postives = 143/275 (52.00%), Query Frame = 0 
Query:  194 GEKKGKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSILSSLSSNHAPKRLPTVLNRAPVMSELAKP-VPP--GPISVLTGDKRADYQQKMISGIDFSRPPPGLPP-------------TNLPPPHFDAP---PPVSSEFASEEPFTSGDFYSGGYEPTMESQ----WDAPPSTFSAPPTGDAPPGDPGYEDRRDVWRDQGRRPSRESRDRER--YERERE 443
             + +GKF VEDF+ +GT+NG PA +Y IE  E+KPW +PGADITDYFNYGF E TW AYC RQRK+R  E+ V M        S  ++    +S  ++N+    +PT+  ++   S+   P VPP    I V+T ++R +Y +K  S  D S PPP +P               ++PPP F  P    P   E+   EP    D Y   +EPT + Q    W++   +    PT     GD   + R D+ RD+    SR  ++ E   YER+RE
Sbjct:  202 NKHQGKFNVEDFESMGTINGVPAHEYSIETTEEKPWLKPGADITDYFNYGFNENTWLAYCERQRKMRCNESLVGM--------STLAMHNQQVSISATNN--NMIPTLDVKSS--SKFQTPNVPPKENTIEVMTAERR-EYSRKHFSTPDLSVPPPIIPTNFDVPPPMIQNSINSIPPPGFGPPQINVPYEPEYYPHEP----DPYYNTFEPTQDMQWNQSWNSNVKSIENIPTLSN--GDSYNKARPDLVRDKEYYASRVKKEPEERVYERDRE 457
[Close]
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1121128209|ref|XP_019551865.1| (PREDICTED: pre-mRNA 3'-end-processing factor FIP1 [Aedes albopictus])

HSP 1 Score: 140.969 bits (354), Expect = 2.345e-32
Identity = 88/229 (38.43%), Postives = 127/229 (55.46%), Query Frame = 0 
Query:  186 PKTARAPPGEKK-----GKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSILSSLSSNHAPKRLPTVLNRAPVMSELAKPVPPGP------------ISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDAPPS 397
            P+ A+A PG+ K     GKF++E+F+ VGT+NG PA ++ I++ ++KPW++PGADITDYFNYGF EETW+AYC RQ+++RM E+GV + G T   I+ P    +  +       P+++  + N   V+  +A    P P            I V+T D+R           ++SR      P  + PP F APP    EF   EP    D+   GYEPT ESQW+  P+
Sbjct:  165 PQVAQAAPGQDKAKQPAGKFSIEEFESVGTINGVPAHEFSIDSLDEKPWRKPGADITDYFNYGFNEETWRAYCERQKRMRMHESGVGLQGLT---INNPQAAQAQNNWRQGPPPPRKM--MNNGIDVIGGMAMHPRPEPQDMMPRHPKENIIQVMTADRR-----------EYSRTSKFDSP--MGPPPFGAPP----EFYHNEP----DYGDYGYEPTQESQWNQEPN 367
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Match: gi|1121079491|ref|XP_019554766.1| (PREDICTED: pre-mRNA 3'-end-processing factor FIP1-like [Aedes albopictus] >gi|1000210207|gb|KXJ80231.1| hypothetical protein RP20_CCG026097 [Aedes albopictus])

HSP 1 Score: 140.969 bits (354), Expect = 2.347e-32
Identity = 88/229 (38.43%), Postives = 127/229 (55.46%), Query Frame = 0 
Query:  186 PKTARAPPGEKK-----GKFAVEDFDQVGTVNGAPAPDYDIEANEDKPWKQPGADITDYFNYGFTEETWQAYCGRQRKLRMGEAGVAMPGQTNNIISKPSLTPSILSSLSSNHAPKRLPTVLNRAPVMSELAKPVPPGP------------ISVLTGDKRADYQQKMISGIDFSRPPPGLPPTNLPPPHFDAPPPVSSEFASEEPFTSGDFYSGGYEPTMESQWDAPPS 397
            P+ A+A PG+ K     GKF++E+F+ VGT+NG PA ++ I++ ++KPW++PGADITDYFNYGF EETW+AYC RQ+++RM E+GV + G T   I+ P    +  +       P+++  + N   V+  +A    P P            I V+T D+R           ++SR      P  + PP F APP    EF   EP    D+   GYEPT ESQW+  P+
Sbjct:  165 PQVAQAAPGQDKAKQPAGKFSIEEFESVGTINGVPAHEFSIDSLDEKPWRKPGADITDYFNYGFNEETWRAYCERQKRMRMHESGVGLQGLT---INNPQAAQAQNNWRQGPPPPRKM--MNNGIDVIGGMAMHPRPEPQDMMPRHPKENIIQVMTADRR-----------EYSRTSKFDSP--MGPPPFGAPP----EFYHNEP----DYGDYGYEPTQESQWNQEPN 367
The following BLAST results are available for this feature:
BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000071887.206e-6145.22supercontig:LSalAtl2s:LSalAtl2s404:336664:338091:-... [more]
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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
gi|75041862|sp|Q5RAA7.1|FIP1_PONAB3.666e-2140.17RecName: Full=Pre-mRNA 3'-end-processing factor FI... [more]
gi|74749365|sp|Q6UN15.1|FIP1_HUMAN3.832e-2140.17RecName: Full=Pre-mRNA 3'-end-processing factor FI... [more]
gi|81883542|sp|Q5U317.1|FIP1_RAT1.134e-2040.00RecName: Full=Pre-mRNA 3'-end-processing factor FI... [more]
gi|81881579|sp|Q9D824.1|FIP1_MOUSE1.282e-2040.00RecName: Full=Pre-mRNA 3'-end-processing factor FI... [more]
gi|82180600|sp|Q5XJD3.1|FIP1_DANRE2.286e-1845.74RecName: Full=Pre-mRNA 3'-end-processing factor FI... [more]
gi|74634030|sp|Q6C784.1|FIP1_YARLI1.230e-1656.14RecName: Full=Pre-mRNA polyadenylation factor FIP1[more]
gi|1175470|sp|Q09801.1|FIP1X_SCHPO6.829e-1556.14RecName: Full=Pre-mRNA polyadenylation factor fip1[more]
gi|218512046|sp|Q6BGR9.2|FIP1_DEBHA1.076e-1456.14RecName: Full=Pre-mRNA polyadenylation factor FIP1[more]
gi|74692232|sp|Q751K8.1|FIP1_ASHGO1.648e-1456.14RecName: Full=Pre-mRNA polyadenylation factor FIP1[more]
gi|74608241|sp|Q6FJ55.1|FIP1_CANGA6.007e-1354.39RecName: Full=Pre-mRNA polyadenylation factor FIP1... [more]

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BLAST of pre-mrna polyadenylation factor fip1 isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1279714821|ref|XP_022901877.1|1.888e-3639.15pre-mRNA 3'-end-processing factor FIP1 isoform X4 ... [more]
gi|1279714819|ref|XP_022901876.1|2.165e-3639.15pre-mRNA 3'-end-processing factor FIP1 isoform X3 ... [more]
gi|91084047|ref|XP_967260.1|2.256e-3539.08PREDICTED: pre-mRNA polyadenylation factor FIP1 is... [more]
gi|157117959|ref|XP_001653120.1|4.369e-3438.77pre-mRNA 3'-end-processing factor FIP1 [Aedes aegy... [more]
gi|642924819|ref|XP_008194054.1|7.363e-3436.65PREDICTED: pre-mRNA 3'-end-processing factor FIP1 ... [more]
gi|1279714815|ref|XP_022901873.1|1.977e-3336.00pre-mRNA 3'-end-processing factor FIP1 isoform X1 ... [more]
gi|1279714817|ref|XP_022901874.1|2.627e-3336.00pre-mRNA 3'-end-processing factor FIP1 isoform X2 ... [more]
gi|328703305|ref|XP_001948038.2|2.102e-3237.09PREDICTED: pre-mRNA 3'-end-processing factor FIP1 ... [more]
gi|1121128209|ref|XP_019551865.1|2.345e-3238.43PREDICTED: pre-mRNA 3'-end-processing factor FIP1 ... [more]
gi|1121079491|ref|XP_019554766.1|2.347e-3238.43PREDICTED: pre-mRNA 3'-end-processing factor FIP1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2629_size13770supercontigscaffold2629_size13770:31..4466 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold2629_size13770-snap-gene-0.3-mRNA-1maker-scaffold2629_size13770-snap-gene-0.3-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2629_size13770:31..4466+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold2629_size13770-snap-gene-0.3 ID=maker-scaffold2629_size13770-snap-gene-0.3|Name=pre-mrna polyadenylation factor fip1 isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=4436bp|location=Sequence derived from alignment at scaffold2629_size13770:31..4466+ (Tigriopus kingsejongensis)
CTCGAGTGCGAGCCTGGCGTGTGTGCGGACTTCATCTCCCGTTTGGGCGT
GCTGTCTCTCCGGAATCCCGCCCACCCCACTGATTGGCCGTGTCGCCGCT
GCTCCCCGCTTGACGACCATCATGGCCGATGAGGAAGACTTTCTGTACGG
GGCTGACGAGGAGGCCGGGGGCCCGTCCGAGGCCGCTTCGCCCGAGCCCA
CGCCGGTCTCCGCCGAGCCGCCCGAGGACGAGGGGTCCGCGGAGGCCGAC
GAGCCCTCCGAAGTGCCGCAGGTAGCTATGAGACGCGCGCGGGCGACCGT
TGGGGCGAGCCGAGCCCGGTTCAGGCCCGACCCATTCCGGGGCGATCGTG
GGCTGTCATCCGGATCACCGAGTGGATCGGGCCCATCCGACCCACACGAT
GGTCGCCATTGGCACTCAATGATGAGCCCGGGCTCATTCCCACCTCGGCT
AACCAGCCCAACGCCGATCTAGGGGGTGAATCAGGCCGGGTTGCCTGAAC
TGCGACGGATTCTCTTTCCAGCCCACGGCCGAGGAGCCAGAGGACGAGGG
CAACGGCCTCAGCGATTTGGACGAGGCGGATGACTTGGTCGCTCCCGGCG
ACATTGATGACCGGGCCGAGGCCGGCGAGGTGGAGGAAGGGACAGCCGAT
GAGGCGGAGGAGGGCGAGCGCAGCCCGGGTACGGCCAATGGCCAGAAGAG
CGGCGATCCCGAGGATGAGGATTCCGAAGACTCGGATGATGAAGACAACA
TCAAAATCTCCATCGATCACAACAAGATTGACGAGACCAAGACCTCCTAC
CAGCACTTTGGGCTCAACCCCAAGACAGCCCGGGCCCCGCCGGGCGAGAA
GAAGGGCAAGTTCGCCGTCGAGGACTTTGACCAGGTGGGCACGGTCAACG
GAGCGCCCGCGCCAGACTATGACATCGAGGCCAACGAGGACAAGCCCTGG
AAACAACCGGGTACGTTACATATGTATTGAGAGTCGTCAGTCCCCCGGCT
CGGAAGCCTATGACCGGGTGCCAGGGGGTTGGGGATGGGAGGAGAGGGGG
AGGGATACATTATTCACATTATTCAAGTCAGTGGCGAAACATGGGTGCCC
TGTGGTTCACTTCCAAACCGACGTTGGCACATTTGAACACGGTCCAGGCT
GGCCAGCGCGCGCGTTCAGGCGAGCTTCGAGCCGCTAGCCTCCACCTTCA
GACGGATGAGAATCGAGTGCCAGAGCTGGCGCCCCGCATTCAGGCCGGGC
GCCGCGTCCAGATCCGCGCTGAAACACGGGCCCTGAGCCAGGATCCGCCG
CTGACCGGTCAGGAGGGACTGGACCGGGCCGACAAAGTTGAGCGGGGCCA
GGGGGCCGTGAGCCACCACCTCGTGCTCGAAGCGGGCGGCCACGTCCGTG
TCGCCAAACACCTGGACCAAGATGAGCAGCCGGTGTTGGCGGATGAGCGT
GTTGGCCACAAAGGTGTGACCCTCGCACTCGAACACCTTGGGCGTGGCCA
GGAGACAGGCTCGGGTGTCCTCGGGCCAGTGAAGCGCCTCGGTGGCGGCT
GGGGCCCGGACAAGCCGGAAGGAGTGCGATCGCAGGAAGTGGGCTCGGAT
ATCGGGGAGGGCATCGTGCCGGCTGCAGGCCACCTCGGGGCATGGAAACG
GTCGTCGAGAACAGGTGATCTCGTGGATGGGCATCTCGGAAACGCGGCAT
TGAGCCTGACAGCCGTAGGGCCCGTACGTACAGGCCACGGGCGGATCGAA
GAGCAGGAGAATCCGCTCGGCCGCCAGATTGCGATTGTAGATGGAGGGCT
CGCGGCAGAGCGGACACTTGTCCAAATTGGCCAGACATTGGTGGCAGTTG
AGGTGCCCGTTGGTGCACTGATGGAGACGGGGCGTGCACGGGATCCCGCA
CACACTGCACTGTAACAAGGACAGCAGTGAGCTCACCCAGGAGCCGTCCG
TCGTGCGCGCTTCGGCCAATTCACGCAGGGACATCTCTTTTTGTGCGTGT
TACATGCCTTTGGCCGGTGTCTCTGGCTCCGGGCGTGGCCGGACTTAGCA
ACGTTATGGCACTTGGGGCAGCCACCAATTTGTTGGGGTACACTTCAGCT
GATGCTCAACCAGTTGAGCCCAGTGTTGTCAGATCTACTGAACTGGCAGC
CATGTCATGCGCACTTCCAGTCCGTCCATTGATGACATAACGGCTCTCGA
GCTTCCTGAACTTGGACGCCGACTTTTGGACACATTTTTCGTTGAGTGCG
ACTAGAGTGCGGCTAGTGCGACATCTTTAGTGCGACCTCCAGTTGAGCCC
AGTGTTGCCAGATCCTACGGAGCTCATTATACCCAAGCAAGCCTCCAATT
AAACCATTTTCAAAAAAGGACCCGTTTGGGGCGGTAAAACGCAATTCAGT
TCAGTTGATGCCAAACCGGTTGAGCCCATGACAGGAGGTTAACCCAGATG
CCCGTTGGTTCCATTTGATCAATGTCAAGGTTGGACCAAAATTATCCCGC
GATTCCCGTAGCCGATGTCGAGTCTGTTTCGTAATGGCCGGTTTGAATCA
AGCCACTGTATTACCAAAGCCATGCGGGGTCCCAAAAGCCAGCTCAAGAG
CAAATGGGGGAAATTCAAGTTATGAGACCGAGGCTAGAGAGATTGAGAGG
ACCTAAGTCTGTGCAGGGTTTGACAGTAGCCAACCAGAGGGAAAGAAGCT
TGTTCAACCAAGACCAATTTTGAATGTTCAGCTCTCAAATGGATCCCAAG
ACCCCCAGCCCTTTGAAGTAGAGAAAGGGCCATGGATTTAGTATGTGGCA
AGTGTCGGGTATTATTTGTCACTCTGGACACCACCGTGGTTATGAGAAGC
CTTGTTTGTAGGCAAGATACTTTTGGTCTTCCTGGAGTAATTCCAAAGTC
CATATATCTGTACATAATGTTAGGGAAGGAAATATTGGTTCTCCTCTCCG
AGATCTCTTGAAGAAAATGCCCAAATGGCAGCTGACACTTCTTCAGGCAA
GCTGGCTGATCCGCTGGGCTTTGTTCATATAGTTCGTTTTTGGTTTGAAC
TGTCTCTCGACTCTCTATTTTCTCACTTTCAACAACCTGGCCATTTGAAC
TTAAAAAGATAGAGCACTGAAGTAAAGCTATGGCTGATCTATTTTTCCGC
CATCCAAGTGTGAGAAGAGAGGCTGTTCCAGCCTCTCTTATCACTTTTGG
ACAGCTCCATGTTATTTAACGATGCGCGTTGGGGGTGTCGCACAGTATGC
ACTGATAGGTTTCAAATTCAATTCGTACACCAGTAATGTGTGATGAATGG
TTCGCTTGGTATTGTTATTAGAACATTGGCGTGAGTGCTTGCATCAGTAA
GCATACCTACATCAACGAGTTTTGAATCAAGTACAATCTGTCAGAGAAAC
CGGACTATTTACGTTTTTGCCTGTTCTTAGAGCCGTGCGGATGAATTCGG
TAGGGTGTATAAGCCCATCATAGCCCTCCTCTTTGTGTAGGGATGGCCCT
CATTCAACATTCAAGCCTCTACATGGTCATTGTTTTATTTCAGGTGCCGA
TATCACGGACTACTTCAACTACGGCTTCACAGAAGAGACCTGGCAGGCCT
ACTGTGGTCGTCAGCGCAAACTCCGGATGGGCGAAGCAGGGGTTGCCATG
CCCGGTCAGACCAACAACATTATTTCCAAACCCAGTCTGACGCCCTCCAT
CTTGAGCTCACTGTCCTCCAACCACGCGCCCAAGCGATTGCCCACGGTAT
TAAATCGGGCTCCGGTAATGAGTGAACTCGCCAAACCAGTACCACCCGGA
CCAATCTCGGTGCTCACAGGAGACAAGCGGGCCGACTATCAGCAGAAAAT
GATCAGTGGCATCGACTTCTCCCGACCTCCGCCCGGCTTACCCCCTACCA
ATCTCCCCCCACCCCACTTTGACGCCCCTCCCCCAGTGTCAAGTGAGTTC
GCGAGCGAAGAACCATTCACCTCGGGTGACTTCTACAGTGGTGGCTACGA
GCCCACTATGGAGTCCCAGTGGGACGCGCCGCCCTCCACCTTCAGTGCTC
CGCCGACCGGTGACGCGCCCCCCGGTGATCCCGGCTACGAGGATCGCAGG
GACGTGTGGCGCGACCAGGGGCGAAGACCTTCCAGAGAGAGCCGCGACCG
AGAGCGCTACGAACGCGAGCGTGAACGCAAGCGGCGACGAACCCGCAGTC
GTTCCCGAGACCGCCATCGCGAGCATCGGGATCGAGAGCGCAGTGAGCGT
CGGGATCGCGAGCGCGATGGCGAGCGTGAGCGAAGCAGCCGTCCTGAGCG
CGAGAGCGAGCCTCGAAGTAGTGAAAGGCGTTCGGAAAGGCGCAGCCGCT
CCCCCGGACACCGCAGTTCCAGCCGCAAACGGAGCAAGCGTGAACGGAGG
GTGAAAGCCGAGATCAAGGATGAGCCACGAGACGAC
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Synonyms
The feature 'pre-mrna polyadenylation factor fip1 isoform x2' has the following synonyms
Synonym
Tk11763
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