abc c2 partial, maker-scaffold2698_size13172-snap-gene-0.4 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc c2 partial vs. L. salmonis genes
Match: EMLSAG00000000090 (supercontig:LSalAtl2s:LSalAtl2s1014:9799:23913:-1 gene:EMLSAG00000000090 transcript:EMLSAT00000000090 description:"maker-LSalAtl2s1014-snap-gene-0.6") HSP 1 Score: 74.3294 bits (181), Expect = 4.446e-17 Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDAN 116 L GL + E G N+S+ LI I+DEA +A+ LE+++ I T +F T+ IAHR+ ++ D+I+VL+ G I EF +PE+L+K+ S+F M + N Sbjct: 777 LPGGLDFSLKENGSNISLAGSNLI-------------IMDEAXSAMTLESEERILNTYFSRFSSSTIFVIAHRIQPLLACDKILVLENGTIAEFGNPESLIKSQKSIFKSMLRRTN 879 HSP 2 Score: 46.595 bits (109), Expect = 2.560e-7 Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 0 Query: 9 VSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVD--LETDDLIQTTIRKQF-QGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENL 100 ++ G LS GQRQ I ARA+ + +V ++D+ +A D L+ T K F Q T L I ++ + I DRI+V+ G + E DS E + Sbjct: 170 LASNGSTLSGGQRQRIGFARAIYQNAQVYLMDDPLSACDSNLKAQIFHNTIGPKGFLQKKTRLLITNQSSLIPLMDRIIVIQNGTVEEKDSAEEV 264
BLAST of abc c2 partial vs. L. salmonis genes
Match: EMLSAG00000003104 (supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18") HSP 1 Score: 72.4034 bits (176), Expect = 2.550e-16 Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 0 Query: 4 GLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAK 113 G +V E G LS G++Q + +ARA L+ + ++I DEAT+++D T+ +I +++ G T + IAHRL+T++ D I VL G++ E + E LL NT +L G ++ Sbjct: 489 GYLTQVGERGLKLSGGEKQRVAIARAALKDSPIIIFDEATSSLDSITETMIMKALKRVTSGKTAIIIAHRLSTVVHADEIFVLSNGKVIERGTHEELL-NTLTLPNGRSR 597
BLAST of abc c2 partial vs. L. salmonis genes
Match: EMLSAG00000004492 (supercontig:LSalAtl2s:LSalAtl2s2344:67375:70448:-1 gene:EMLSAG00000004492 transcript:EMLSAT00000004492 description:"snap-LSalAtl2s2344-processed-gene-0.9") HSP 1 Score: 45.0542 bits (105), Expect = 8.715e-8 Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 0 Query: 63 QGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANLGC 119 +G TV+TIAHRL+TI + DRI V+ +G++ E S L+ ++ F + + C Sbjct: 2 KGRTVVTIAHRLSTIQNADRIAVVHEGKVMEIGSYSELMNISNGYFKNLVQKQTFSC 58
BLAST of abc c2 partial vs. SwissProt
Match: gi|2506123|sp|P14772.2|BPT1_YEAST (RecName: Full=Bile pigment transporter 1) HSP 1 Score: 149.828 bits (377), Expect = 5.332e-42 Identity = 66/113 (58.41%), Postives = 93/113 (82.30%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAK 113 + D L K++E G NLSVGQRQL+CLARALL ++K+L+LDEATA+VD+ETD +IQ TIR++F+ T+LTIAHR++T++D D+I+VLD+G +REFDSP LL + S+FY + + Sbjct: 1441 VNDILDVKINENGSNLSVGQRQLLCLARALLNRSKILVLDEATASVDMETDKIIQDTIRREFKDRTILTIAHRIDTVLDSDKIIVLDQGSVREFDSPSKLLSDKTSIFYSLCE 1553
BLAST of abc c2 partial vs. SwissProt
Match: gi|3915963|sp|P32386.2|YBT1_YEAST (RecName: Full=ATP-dependent bile acid permease) HSP 1 Score: 147.132 bits (370), Expect = 4.692e-41 Identity = 64/109 (58.72%), Postives = 88/109 (80.73%), Query Frame = 0 Query: 5 LSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAK 113 LS ++SEGG NLS GQRQL+CLAR+LLR K+++LDEATA++D +D IQ TIRK+FQG T+LTIAHRL +++DYD+I+V+D G+++E+D P +LL N S FY M + Sbjct: 1528 LSSEISEGGSNLSQGQRQLMCLARSLLRSPKIILLDEATASIDYSSDAKIQETIRKEFQGSTILTIAHRLRSVIDYDKILVMDAGEVKEYDHPYSLLLNKQSAFYSMCE 1636
BLAST of abc c2 partial vs. SwissProt
Match: gi|206729914|sp|O15439.3|MRP4_HUMAN (RecName: Full=Multidrug resistance-associated protein 4; AltName: Full=ATP-binding cassette sub-family C member 4; AltName: Full=MRP/cMOAT-related ABC transporter; AltName: Full=Multi-specific organic anion transporter B; Short=MOAT-B) HSP 1 Score: 145.976 bits (367), Expect = 1.275e-40 Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 0 Query: 8 KVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAK 113 +++E G N SVGQRQL+CLARA+LRK ++LI+DEATA VD TD+LIQ IR++F CTVLTIAHRLNTI+D D+IMVLD G+++E+D P LL+N SLFY M + Sbjct: 1169 ELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYDEPYVLLQNKESLFYKMVQ 1274
BLAST of abc c2 partial vs. SwissProt
Match: gi|74996860|sp|Q54P13.1|ABCC8_DICDI (RecName: Full=ABC transporter C family member 8; AltName: Full=ABC transporter ABCC.8) HSP 1 Score: 144.436 bits (363), Expect = 3.919e-40 Identity = 65/113 (57.52%), Postives = 87/113 (76.99%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAK 113 L+ GL V +GGDN SVGQRQL+ + RALL+K +++LDEA++++D+ +D LIQ TIR +F CTVLTIAHRL TI D D+IMVLDKG++ E+DSP LLKN S++Y + K Sbjct: 1466 LDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDSIYYSLVK 1578
BLAST of abc c2 partial vs. SwissProt
Match: gi|1018447391|sp|P91660.4|L259_DROME (RecName: Full=Probable multidrug resistance-associated protein lethal(2)03659; AltName: Full=Wunen region A protein) HSP 1 Score: 144.05 bits (362), Expect = 5.417e-40 Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHS 106 L DGL+ K+SEGG N SVGQRQL+CLARA+LR+ ++L++DEATA VD +TD LIQ TIR +F+ CTVLTIAHRL+TI+D D++MV+D G++ EF SP L+ + S Sbjct: 1240 LPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDS 1345 HSP 2 Score: 59.3066 bits (142), Expect = 3.080e-10 Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 9 VSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETD-DLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLK 102 V E G LS GQ+ I LAR++ RK + +LD+ +AVD L +R +G TV+ + H+ + D+I++L GQI+ E+LLK Sbjct: 617 VGERGATLSGGQKARISLARSVYRKASIYLLDDPLSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILANGQIKALGDYESLLK 711
BLAST of abc c2 partial vs. nr
Match: gi|1316204576|ref|XP_023212655.1| (multidrug resistance-associated protein 1-like [Centruroides sculpturatus]) HSP 1 Score: 206.453 bits (524), Expect = 1.591e-64 Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 LE GL H +SEGG+NLSVGQRQL+CLARALLRKTKVLILDEATAA+DLETD LIQTTIR +F GCT+LTIAHRLNTIMDYDR++VLDKG I+EFDSPENLL+N SLFYGMAKDA L Sbjct: 166 LESGLEHMISEGGENLSVGQRQLVCLARALLRKTKVLILDEATAAIDLETDALIQTTIRTEFAGCTILTIAHRLNTIMDYDRVLVLDKGIIKEFDSPENLLQNKESLFYGMAKDARL 282
BLAST of abc c2 partial vs. nr
Match: gi|586962512|gb|AHK05644.1| (ATP-binding cassette transporter sub-family C member 1 isoform X5 [Tigriopus japonicus]) HSP 1 Score: 212.231 bits (539), Expect = 3.083e-61 Identity = 100/117 (85.47%), Postives = 110/117 (94.02%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 LEDGL H VSEGG+NLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQ+TIRK+F+GCTVLTIAHRLNTIMDYDRI+VLDKG+I EFDSP+ LL+N S+FY MA+DANL Sbjct: 1392 LEDGLEHPVSEGGENLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQSTIRKEFKGCTVLTIAHRLNTIMDYDRIIVLDKGRIEEFDSPQALLENPGSIFYSMARDANL 1508
BLAST of abc c2 partial vs. nr
Match: gi|1133448726|ref|XP_019851872.1| (PREDICTED: multidrug resistance-associated protein 1-like, partial [Amphimedon queenslandica]) HSP 1 Score: 186.037 bits (471), Expect = 1.759e-58 Identity = 92/118 (77.97%), Postives = 102/118 (86.44%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANLG 118 L +GL + V+EGG+NLSVGQRQL+CLARALLRKTK+L+LDEATAAVDLETDDLIQ TIRK+F GCTVLTIAHRLNTIMDYD+IMVLD G I EFDSP N+L LFYGMAKDA L Sbjct: 29 LAEGLEYPVAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQKTIRKEFAGCTVLTIAHRLNTIMDYDKIMVLDAGCISEFDSP-NVLLERRGLFYGMAKDAGLA 145
BLAST of abc c2 partial vs. nr
Match: gi|338235270|gb|AEI91125.1| (ABC C2 transporter, partial [Rhipicephalus microplus]) HSP 1 Score: 186.808 bits (473), Expect = 1.796e-58 Identity = 85/117 (72.65%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 LE GL H ++EGG+N+SVGQRQL+CLARALLRK+++LILDEATAAVD+ETDDLIQ TIR++F CT++TIAHRLNT++DYDRIMVLD+GQI EFD+P +LLK S+FY +AKDANL Sbjct: 45 LEKGLEHIITEGGENISVGQRQLVCLARALLRKSRILILDEATAAVDMETDDLIQATIRREFADCTIITIAHRLNTVLDYDRIMVLDRGQIVEFDAPRDLLKQETSVFYQLAKDANL 161
BLAST of abc c2 partial vs. nr
Match: gi|908502109|ref|XP_013062667.1| (PREDICTED: canalicular multispecific organic anion transporter 2-like [Biomphalaria glabrata]) HSP 1 Score: 190.274 bits (482), Expect = 9.155e-58 Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 0 Query: 4 GLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 GL EGG NLSVGQRQL+CLAR+LLRKTK+L+LDEATAAVD+ETDDLIQ TIR +F+ CTVLTIAHRLNTIMDYDRIMVLD+G+I+EFD+P+ LLKN S+FYGMAKDANL Sbjct: 202 GLEFVCDEGGQNLSVGQRQLVCLARSLLRKTKILVLDEATAAVDMETDDLIQKTIRSEFKDCTVLTIAHRLNTIMDYDRIMVLDQGEIKEFDAPDILLKNKQSIFYGMAKDANL 315
BLAST of abc c2 partial vs. nr
Match: gi|1078810430|ref|XP_018496819.1| (PREDICTED: LOW QUALITY PROTEIN: multidrug resistance-associated protein 1-like [Galendromus occidentalis]) HSP 1 Score: 200.29 bits (508), Expect = 3.925e-57 Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANLG 118 +E GL H+VSEGG+NLSVGQRQLICLAR+LLRKT+VL+LDEATAAVDLETD+LIQ TIR +F+ CT++TIAHRLNTIMDYDRIMVLD G I+EFDSP LLKN +S+FY MAKDANL Sbjct: 1511 VEKGLDHEVSEGGENLSVGQRQLICLARSLLRKTRVLVLDEATAAVDLETDELIQKTIRTEFKDCTIMTIAHRLNTIMDYDRIMVLDNGYIKEFDSPSELLKNKNSIFYSMAKDANLA 1628
BLAST of abc c2 partial vs. nr
Match: gi|1321305418|ref|XP_023294651.1| (multidrug resistance-associated protein 1 isoform X14 [Lucilia cuprina]) HSP 1 Score: 200.29 bits (508), Expect = 3.957e-57 Identity = 93/117 (79.49%), Postives = 106/117 (90.60%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 L GL+H++SEGGDNLSVGQRQL+CLARALLRKTKVL+LDEATAAVDLETDDLIQ TIR +F+ CTVLTIAHRLNTI+D D+++VLDKG+I EFDSPENLL N+ S FY MAKDANL Sbjct: 1433 LPAGLNHEISEGGDNLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRSEFKECTVLTIAHRLNTILDSDKVIVLDKGEISEFDSPENLLNNSQSAFYSMAKDANL 1549
BLAST of abc c2 partial vs. nr
Match: gi|1321305412|ref|XP_023294648.1| (multidrug resistance-associated protein 1 isoform X11 [Lucilia cuprina]) HSP 1 Score: 200.29 bits (508), Expect = 3.957e-57 Identity = 93/117 (79.49%), Postives = 106/117 (90.60%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 L GL+H++SEGGDNLSVGQRQL+CLARALLRKTKVL+LDEATAAVDLETDDLIQ TIR +F+ CTVLTIAHRLNTI+D D+++VLDKG+I EFDSPENLL N+ S FY MAKDANL Sbjct: 1433 LPAGLNHEISEGGDNLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRSEFKECTVLTIAHRLNTILDSDKVIVLDKGEISEFDSPENLLNNSQSAFYSMAKDANL 1549
BLAST of abc c2 partial vs. nr
Match: gi|1321305406|ref|XP_023294645.1| (multidrug resistance-associated protein 1 isoform X8 [Lucilia cuprina]) HSP 1 Score: 200.29 bits (508), Expect = 3.957e-57 Identity = 93/117 (79.49%), Postives = 106/117 (90.60%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 L GL+H++SEGGDNLSVGQRQL+CLARALLRKTKVL+LDEATAAVDLETDDLIQ TIR +F+ CTVLTIAHRLNTI+D D+++VLDKG+I EFDSPENLL N+ S FY MAKDANL Sbjct: 1433 LPAGLNHEISEGGDNLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRSEFKECTVLTIAHRLNTILDSDKVIVLDKGEISEFDSPENLLNNSQSAFYSMAKDANL 1549
BLAST of abc c2 partial vs. nr
Match: gi|1321305410|ref|XP_023294647.1| (multidrug resistance-associated protein 1 isoform X10 [Lucilia cuprina]) HSP 1 Score: 200.29 bits (508), Expect = 3.957e-57 Identity = 93/117 (79.49%), Postives = 106/117 (90.60%), Query Frame = 0 Query: 1 LEDGLSHKVSEGGDNLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQTTIRKQFQGCTVLTIAHRLNTIMDYDRIMVLDKGQIREFDSPENLLKNTHSLFYGMAKDANL 117 L GL+H++SEGGDNLSVGQRQL+CLARALLRKTKVL+LDEATAAVDLETDDLIQ TIR +F+ CTVLTIAHRLNTI+D D+++VLDKG+I EFDSPENLL N+ S FY MAKDANL Sbjct: 1433 LPAGLNHEISEGGDNLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRSEFKECTVLTIAHRLNTILDSDKVIVLDKGEISEFDSPENLLNNSQSAFYSMAKDANL 1549 The following BLAST results are available for this feature:
BLAST of abc c2 partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 13
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BLAST of abc c2 partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abc c2 partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2698_size13172:6356..13157- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold2698_size13172-snap-gene-0.4 ID=maker-scaffold2698_size13172-snap-gene-0.4|Name=abc c2 partial|organism=Tigriopus kingsejongensis|type=gene|length=6802bp|location=Sequence derived from alignment at scaffold2698_size13172:6356..13157- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc c2 partial' has the following synonyms
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