atp synthase e chain, maker-scaffold270_size230592-snap-gene-1.26 (gene) Tigriopus kingsejongensis

Overview
Nameatp synthase e chain
Unique Namemaker-scaffold270_size230592-snap-gene-1.26
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of atp synthase e chain vs. L. salmonis genes
Match: EMLSAG00000008239 (supercontig:LSalAtl2s:LSalAtl2s497:85497:85766:1 gene:EMLSAG00000008239 transcript:EMLSAT00000008239 description:"augustus_masked-LSalAtl2s497-processed-gene-0.5")

HSP 1 Score: 109.383 bits (272), Expect = 2.308e-33
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 0 
Query:    8 IDLGPANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            IDLGP   ++SPL+KL RW+ L  G++WG+ RY +H  TE E+RAYNARM+P+WD E+A +KAK+NR +LL LAKETGV  P  F
Sbjct:    6 IDLGPIG-KVSPLVKLCRWTALSLGVYWGIKRYNVHKATEDEIRAYNARMKPVWDLEKAQMKAKSNREQLLILAKETGVVPPPEF 89
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BLAST of atp synthase e chain vs. nr
Match: gi|961376144|gb|ALS04816.1| (ATP synthase E chain [Pseudodiaptomus poplesia])

HSP 1 Score: 98.5969 bits (244), Expect = 3.999e-25
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:   16 RISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            R+SPLIK  RW+ LI GI+WG HRY+++   E E+RAYNA+MQPIWD+E+A   A ANR  ++YLAK TG  +PA+F
Sbjct:    9 RVSPLIKTCRWTALIAGIYWGAHRYKVNKAAEDEVRAYNAKMQPIWDAEKAAKAAAANRETMIYLAKATGTPIPADF 85
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BLAST of atp synthase e chain vs. nr
Match: gi|1325288374|ref|XP_023328948.1| (ATP synthase subunit e, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 90.1225 bits (222), Expect = 1.051e-21
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0 
Query:   16 RISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            R+SPLIK  RW+ LI GI+WG  RY+ +  TE E+RAYNA+M P+WD+E+A   A ANR  ++YLA  TG  +P +F
Sbjct:    9 RVSPLIKTCRWTALIAGIYWGAQRYKANKATEDEIRAYNAKMAPVWDAEKAAKAAAANRENMIYLANATGTPIPKDF 85
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BLAST of atp synthase e chain vs. nr
Match: gi|961375256|gb|ALS04372.1| (ATP synthase E chain [Acartia pacifica])

HSP 1 Score: 89.3521 bits (220), Expect = 1.971e-21
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:   12 PANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            P   R+SPLIK  RWS LI GI+WG +RY++H     E RAY A+M+PIWD+E A  K  ANR EL+YLA  TG  +P +F
Sbjct:    4 PEPVRVSPLIKTCRWSALIAGIYWGFYRYKVHKAAADERRAYEAKMKPIWDAEAAEKKNAANRKELIYLATATGTPIPKDF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|961375254|gb|ALS04371.1| (ATP synthase E chain [Acartia pacifica] >gi|961375258|gb|ALS04373.1| ATP synthase E chain [Acartia pacifica])

HSP 1 Score: 88.5817 bits (218), Expect = 3.560e-21
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:   12 PANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            P   R+SPLIK  RWS LI GI+WG +RY++H     E RAY A+M+PIWD+E A  K  ANR EL+YLA  TG  +P +F
Sbjct:    4 PEPVRVSPLIKTCRWSALIAGIYWGSYRYKVHKAAADERRAYEAKMKPIWDAEAAEKKNAANRKELIYLATATGTPIPKDF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|961375260|gb|ALS04374.1| (ATP synthase E chain [Acartia pacifica])

HSP 1 Score: 87.4261 bits (215), Expect = 9.534e-21
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:   12 PANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            P   R+SPLI+  RWS LI GI+WG +RY++H     E RAY A+M+PIWD+E A  K  ANR EL+YLA  TG  +P +F
Sbjct:    4 PEPVRVSPLIRTCRWSALIAGIYWGSYRYKVHKAAADERRAYEAKMKPIWDAEAAEKKNAANRKELIYLATATGTPIPKDF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|509391758|gb|AGN29660.1| (ATP synthase E chain [Acartia pacifica])

HSP 1 Score: 84.7297 bits (208), Expect = 1.234e-19
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:   12 PANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            P   R+S LIK  RWS LI GI+WG +RY++H     E RAY A+M+PIWD+E A  K  ANR EL+YLA  TG  +P +F
Sbjct:    4 PEPVRVSLLIKTCRWSALIAGIYWGSYRYKVHKAAADERRAYEAKMKPIWDAEAAEKKNAANRKELIYLATATGTPIPKDF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|1022771223|gb|KZS15561.1| (Uncharacterized protein APZ42_018744 [Daphnia magna])

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-17
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:   16 RISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            ++SPLIK  R+S L+ GI WG HR+ ++   E   RA  A  + I D+++A  K + NR ELLYLAK+ GVKVP NF
Sbjct:    8 QVSPLIKFGRYSALLLGIMWGSHRFRVNKAAEDSWRAEEAERKVIRDAQKAEEKLRFNREELLYLAKQAGVKVPPNF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|321477768|gb|EFX88726.1| (hypothetical protein DAPPUDRAFT_230269 [Daphnia pulex])

HSP 1 Score: 77.0258 bits (188), Expect = 1.198e-16
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:   16 RISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            ++SPLIK  RWS L+ G  WG HRY     +ET  R   A  + + D+ +A  K + NR ELLYLA + GVKVP NF
Sbjct:    8 QVSPLIKFGRWSALLLGFMWGSHRYSTLKASETAWRVEEAERKIVKDAHKATEKTRLNREELLYLADQAGVKVPPNF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|321466838|gb|EFX77831.1| (hypothetical protein DAPPUDRAFT_305305 [Daphnia pulex])

HSP 1 Score: 76.6406 bits (187), Expect = 2.162e-16
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:   16 RISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            ++SPLIK  RWS L+ GI WG H Y     +ET  R   A  + + D+ +A  K + NR ELLYLA + GVKVP NF
Sbjct:    8 QVSPLIKFGRWSALLLGIMWGSHHYNTLKASETAWRVEEAERKIVKDAHKATEKTRLNREELLYLADQAGVKVPPNF 84
[Close]
BLAST of atp synthase e chain vs. nr
Match: gi|1228384713|ref|XP_021953957.1| (ATP synthase subunit e, mitochondrial-like [Folsomia candida])

HSP 1 Score: 75.8702 bits (185), Expect = 4.879e-16
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 0 
Query:    4 SMGPIDLGPANPRISPLIKLSRWSLLIGGIFWGMHRYEIHSKTETELRAYNARMQPIWDSEQAVVKAKANRAELLYLAKETGVKVPANF 92
            S  P    PA  R S LIK+ RWSLL  GI +G+ R     K ET+LR   A   P  ++++A  KA+ NR ELLYLAKETG  +P NF
Sbjct:    2 SSAPATALPAPIRPSSLIKVGRWSLLALGIMYGISRQSSLVKKETKLREIEAIEGPAREAKKAAEKARLNREELLYLAKETGTPIPPNF 90
The following BLAST results are available for this feature:
BLAST of atp synthase e chain vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000082392.308e-3358.82supercontig:LSalAtl2s:LSalAtl2s497:85497:85766:1 g... [more]
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BLAST of atp synthase e chain vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of atp synthase e chain vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|961376144|gb|ALS04816.1|3.999e-2558.44ATP synthase E chain [Pseudodiaptomus poplesia][more]
gi|1325288374|ref|XP_023328948.1|1.051e-2153.25ATP synthase subunit e, mitochondrial-like [Euryte... [more]
gi|961375256|gb|ALS04372.1|1.971e-2154.32ATP synthase E chain [Acartia pacifica][more]
gi|961375254|gb|ALS04371.1|3.560e-2154.32ATP synthase E chain [Acartia pacifica] >gi|961375... [more]
gi|961375260|gb|ALS04374.1|9.534e-2153.09ATP synthase E chain [Acartia pacifica][more]
gi|509391758|gb|AGN29660.1|1.234e-1953.09ATP synthase E chain [Acartia pacifica][more]
gi|1022771223|gb|KZS15561.1|3.158e-1749.35Uncharacterized protein APZ42_018744 [Daphnia magn... [more]
gi|321477768|gb|EFX88726.1|1.198e-1648.05hypothetical protein DAPPUDRAFT_230269 [Daphnia pu... [more]
gi|321466838|gb|EFX77831.1|2.162e-1648.05hypothetical protein DAPPUDRAFT_305305 [Daphnia pu... [more]
gi|1228384713|ref|XP_021953957.1|4.879e-1648.31ATP synthase subunit e, mitochondrial-like [Folsom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold270_size230592supercontigscaffold270_size230592:179594..183505 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold270_size230592-snap-gene-1.26-mRNA-1maker-scaffold270_size230592-snap-gene-1.26-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold270_size230592:179594..183505-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold270_size230592-snap-gene-1.26 ID=maker-scaffold270_size230592-snap-gene-1.26|Name=atp synthase e chain|organism=Tigriopus kingsejongensis|type=gene|length=3912bp|location=Sequence derived from alignment at scaffold270_size230592:179594..183505- (Tigriopus kingsejongensis)
GCAGTCAGCTGGGCTAGTGCTTCGCAGGGAAGCTACGTTCACTTCACTTC
AGCCCCGACCTCAGCATGTCCACGTCCATGGGTCCCATCGACTTGGGTCC
GGCCAATCCCCGGATCTCGCCCCTCATCAAGCTGTCCCGCTGGTCGCTGC
TCATCGGCGGCATCTTCTGGGGCATGCACAGGTAAGTCTACAGTACAGGG
TATAGGTATAGGTAGTCTATGGGTACAGGACCGAAGGGAACCCAGGGGAG
ACCGAGGAGGGAGCCGAACGCGTCCAGGCGACAGTCTGGATCATCGACTC
TGTCCGACCATGGAGAACTAGAATCACCGGGAGGTCGCACCGAGCGAAAA
ATGTCTCCTAAGATTCAGCCCGCTCGAAAGCCGTGAATGCCATCCATTGG
CGGGCGGGAGTTGGGGGGACATTTCACCCGGTTCTGTGGGGTTTATGATT
TCTTAAACTTTCTTTATGAGAGTTGATGGACTCTTAAACACTACGGCACT
AGTAAAAATGTCTGGCGCAACTCCGGTCCGTCAATGGATGGCATTCACGG
CTTTCGAGCGGGCTGAACCCTGCCGTCTTGAGACACATTTGTCGTTCTGT
GCGACCTCCAGGTGATTCTAGTACTCCATGGTCCGACCTAGACCGACCGC
ACCGTCGGGAGAATCGAACCGGGTGGCCACGTCTGGCCCGGACAATGCCT
GGCTGGGCCAGCCCACCTCCTCACCTGACCTCACCCGATGGGGTCTCGCC
GTCGACAGCTCGGAACCCACTAGGGTCCAGGGCGGGGATGGCGGTCGTGA
GTCAAAACAGTGCTAGCATCAAACTCGACCTAACCTAACCCTAACAGTAT
GTCAATTATGCTCGAGTGATCCTAGCCGCAGCGCTAATCAAAATAAGCTA
CGCTCAAGATACCCTAGCTGCAGTGCTAATCGAAGTCAACTACGCTCGAA
TTACCCTAGCCCCAGCGCTAATTTACTGTAGGTAAACTACGCTCGAATTA
ACCTAGCCGCAGCGCTAGTCGAAGAAAACTACGCTCAGATTACCCGAGCC
GCAGTGCTAATTTACTGTAGGTAAACTACGCTCGAATTAACCTAGCCGCA
GCGCTAGTCGAAGAAAACTACGCTCAGATTACCCTAGCCTCAGTGCTAAT
TTGCTGTAGGTAAACTACGCTCAGATTACCCTAGCCGCAGTGCTAATTTG
TTGTAGGTAAACTACGCTCGAATTAACCTAGCCGCAGCGCTAGTCGAAGA
AAACTACGCTCAGATTACCCTAGCCTCAGTGCTAATTTGCTGTAGGTAAA
CTACGCTCAGATTACCCTAGCCGCAGTGCTAATTTGTTGTAGGTAAACTA
CGCTCGAATTAACCTAGCCGCAGCGCTAGTCGAAGAAAACTACGCTCGAA
TTACCCTAGCCCCAGCGCTAATTGACTGTAGGTAAACTACGCTCGAATTA
ACCTAGCCGCAGCGCTAGTCGAAGAAAACTACGCTCAGATTACCCTAGCC
GCAGCGCTAATCTAGGTAAGCTACGAAACGAAACCTAAAAACGAGCTATT
GTGTAGGAAACCTCTTTGGCCCACCACCGACATCCCCCTACCCTAACCCC
GACGCGGGAAAGCCGGGCCACCCGGTCCTGTGGCGTGGGCTCCTTCGGAA
TGGCGGGCCTGCACAACCTCACAGCCCAGTTTCCTGACCGCTGTGGGTGT
CCTGGCCTCTGGGCTGCGAGGTCCACTCGCGAGACGTCCCGGATGACCGC
CTGGCTGGCTGGCCTGGGACACCCTAGAGTGCTGGTGCGTCAAATCGTGC
CCCAAAAAGTGCCCCAAACCGCCCGCGGGGGGTGGGCGAGTGCCAGGCCC
AGCTCTATATTATCACCGTGAGGTCCTGGCCCCAGTCTGAGTGAGTGGAT
AACGCGGCCTCAATGCGTGAACCTGGAGCCATACCCGTCAGCTTGGCAGT
AGTGTCTACCTGGACGCCCTGCCGCCATTTCGCTCAAACCATAAACAGCC
CAAGCCTCTGATGTGATTGGACAGGAAATTGTTATCACCATTCAAAAAAC
CATTTGTGAAGGTGGCCAAGAATTTAAAAACACATAATAGTATCACATAA
TAGTTTTGAAATGGTTGGAGGATATAGGTACCATAAACCAAGTTCGTGCA
TTATTGGCAAATTTAATAGCTAGTTTATGTTAAATGAAGGCATTTGAATT
GTATATTTGCACCTTTAATTGTAAATTAGACATTTAATACTCACACCAGG
GGAAATGGACAAAATTTGCCATTTTTGCCGTGAAGGTGAACATGGCCAAG
GTTTTTTTTTTCATGGTTTGGCCGAACCCCTGCCACCAGCATCCTATGGA
AGAAGATATAGCCGGCACTTGCAGTTTTTATTAAGAACTGTATTTACAAG
TGGTCAAGAAGCTGGCTGGTTGCAGACTGATCTTGAATCACACGTCTACG
GATCACATACGCTGGGTTGCTGTAGCCAGTAACACGGCCACATTGAATAA
ATCGTGTTGGAAATGATATGGTGCAATTCCAATCTTGGGTTGAACTCGTA
TCGATATGTCTCACTTGCGAGTCCGGCGAGCTGAGTGACCCAAACTAGCA
TCCATTCTCTATTGCGCCCAACGCTGGAGTACTGTGGTCAATAATTGACT
TTCACATGCGTGGAGTATTTTTTAACTTACTTGCAACCATATTGGTGTTT
GGCCTACTGTAGAGCATCTACTTTTGCTAGAAATATAAAACGCACACAGT
TAGTGGGTTGAAGACCACCTTCGTGTGGATGGTAGAGCCATTATCCTGTA
ACACTGAAGGCCGAACTCTGCTGGGCTTCTTCAGCCTTACCAACCAGTGG
GCTGTCTGATTCGGCGCCTGCCCATGTTTGGGTTGCTTATGGTACCTGCG
AAGTTCAAACCTTGGGCCAGTCGTGTGCGTCCACTTCTTCCAGGGGTTCT
TGGGTCATACCTCGAGGGTCGGGTTCCCACACAGGCTCAATGGGAGGCGG
AAAACCAGTCTGACGCACTTGGGTGTCGGGGCCTCTAGAGCTATCATCGG
GCACCAGCCCCCACCCCCTATGTCGCCGGGTTGAGTTTGAGCGCGCGAGT
CCTCATCCACCTGTCGTTTTCTATCTAGATACGAGATCCACTCCAAGACC
GAGACCGAACTGCGGGCCTACAACGCACGCATGCAGCCCATCTGGGATTC
CGAGCAGGCTGTGGTGAAGGCCAAGGCCAATCGCGCGGAGCTCCTCTATC
TGGCCAAGGAGACGGGTGTCAAGGTGAGTGTGGACCCAATTTACATACTC
GCGGGTGTCCTGCCCCCAATAACCGGGGATAGAACGATCGAACCTCCCCC
CCCCTTTGGTTCCGATTCCATGGCAACCAGGCAATCTGTCCCAGCACGCT
CAGTGTCCCTCCCCGCTCAGTGTCCCTCCCAAAAGTCGTAGGGTCAGATG
CATACTTGGGCAGTGTGATGGAATGTCGATCTGCCCCAGGACGAACTCGC
CGGACAATGGAACACATTGCTACAAAGTGGGACTCTTTTTCCCGTTGCAG
GTTCCTGCCAACTTCTAAGATGACCCTCCTGCCTTACCTCCAGTTCAATC
TCTCATCTGGTCGCCCGATGATCGGATGAAGTCCCCGGTACACCAGATTA
GTAGTCTCCAGTTAACCCAAACCATGTCCAGTGGCTCTCACATTTGATGC
TCTTCTGCGATCAGCGAGTGGACGTCTCGGCCTCAGACCACCTCAACACC
CAAGGGCTGTGGAGAGGAGCCCGACCAATATCTATCCACCAGGGCCGATC
GATGACCTCGGGGGCACCCCAAAAATGAAGTCGCTAAATATTCATGCCCT
TGAGCCATCAATAAATTGCCCACATCCTGGGCTGGGACCTCCTCGTGGGT
CGCACACCAAAA
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Synonyms
The feature 'atp synthase e chain' has the following synonyms
Synonym
Tk10974
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