alternative splicing factor srp55 b52, maker-scaffold2813_size12200-snap-gene-0.6 (gene) Tigriopus kingsejongensis

Overview
Namealternative splicing factor srp55 b52
Unique Namemaker-scaffold2813_size12200-snap-gene-0.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of alternative splicing factor srp55 b52 vs. L. salmonis genes
Match: EMLSAG00000002605 (supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 gene:EMLSAG00000002605 transcript:EMLSAT00000002605 description:"maker-LSalAtl2s151-augustus-gene-0.11")

HSP 1 Score: 103.219 bits (256), Expect = 4.755e-28
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            QDLKDYFR CGEITYTNAHKPR  EG+VEFGD++ MENALDRLD+T+L GRR++L +E
Sbjct:  125 QDLKDYFRSCGEITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTDLGGRRIKLYEE 182
[Close]
BLAST of alternative splicing factor srp55 b52 vs. L. salmonis genes
Match: EMLSAG00000005475 (supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 gene:EMLSAG00000005475 transcript:EMLSAT00000005475 description:"maker-LSalAtl2s294-augustus-gene-0.9")

HSP 1 Score: 67.0106 bits (162), Expect = 6.118e-14
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRL 81
            QDLKD  R  GE+T+ +AH  +  EG+VEF  R+ ME A+D+ DN EL GRR+RL
Sbjct:  167 QDLKDVMRRAGEVTFADAHNDKRNEGVVEFISRRDMERAIDKFDNHELHGRRIRL 221
[Close]
BLAST of alternative splicing factor srp55 b52 vs. L. salmonis genes
Match: EMLSAG00000009359 (supercontig:LSalAtl2s:LSalAtl2s599:215116:228556:-1 gene:EMLSAG00000009359 transcript:EMLSAT00000009359 description:"maker-LSalAtl2s599-augustus-gene-2.23")

HSP 1 Score: 55.4546 bits (132), Expect = 7.055e-10
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:   24 LDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQ 83
            ++ QDLKD  +  G +TY  AHK  M EG+V F + +GM  A+D  ++ +L GR+L + +
Sbjct:  153 IEWQDLKDLMKKAGTVTYALAHKNNMHEGMVCFSNEEGMLKAIDIFNDYDLCGRKLIVEE 212
[Close]
BLAST of alternative splicing factor srp55 b52 vs. L. salmonis genes
Match: EMLSAG00000007146 (supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1 gene:EMLSAG00000007146 transcript:EMLSAT00000007146 description:"maker-LSalAtl2s402-augustus-gene-7.14")

HSP 1 Score: 46.9802 bits (110), Expect = 4.467e-7
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEKRKDRSRSRSDSRSRSRSRSRSRSRSRSRSASRSRTPASRSRSRSRSPPANGAAERERSRSRSRSRSRSPSRPKEDEN 162
            + S +  QDLKDY R  GE+TY +AHK R  EG VEF +   ++ A+++LD TEL+GR+++L  ++++ RS SRS SRSRSRSRS++R R      S                    +  + +SRSRSRSRSRS S     EN
Sbjct:  140 LSSRVSWQDLKDYMRQAGEVTYADAHKNRRNEGCVEFANEDDLKTAMEKLDGTELNGRKIKLVPDRKRKRSHSRSRSRSRSRSRSKTRGRKSRSRGSTRSRDRMSKSVSRSK-----SRSKSKSRSRSRSRSRSKSVDDSKEN 277
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 4; AltName: Full=Splicing factor, arginine/serine-rich 4)

HSP 1 Score: 75.485 bits (184), Expect = 2.183e-15
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            QDLKDY R  GE+TY +AHK R  EG++EF     M+ AL++LD TE++GR++RL ++K
Sbjct:  118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDK 176
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|78099805|sp|P26686.4|SRR55_DROME (RecName: Full=Serine-arginine protein 55; Short=SRP55; AltName: Full=52 kDa bracketing protein; AltName: Full=B52 protein; AltName: Full=Protein enhancer of deformed)

HSP 1 Score: 74.7146 bits (182), Expect = 3.266e-15
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            + S +  QDLKDY R  GE+TY +AHK R  EG+VEF     M+ A+++LD+TEL+GRR+ L ++
Sbjct:  127 LSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|20981726|sp|Q08170.2|SRSF4_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 4; AltName: Full=Pre-mRNA-splicing factor SRP75; AltName: Full=SRP001LB; AltName: Full=Splicing factor, arginine/serine-rich 4)

HSP 1 Score: 74.3294 bits (181), Expect = 5.277e-15
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            QDLKDY R  GE+TY +AHK R  EG++EF     M+ AL++LD TE++GR++RL ++K
Sbjct:  118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDK 176
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|123796822|sp|Q3TWW8.1|SRSF6_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6 >gi|614138921|sp|G3V6S8.1|SRSF6_RAT RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 71.633 bits (174), Expect = 3.510e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            QDLKD+ R  GE+TY +AHK R  EG++EF     M+ ALD+LD TE++GR +RL ++K
Sbjct:  124 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDK 182
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|20981728|sp|Q13247.2|SRSF6_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 71.633 bits (174), Expect = 4.019e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            QDLKD+ R  GE+TY +AHK R  EG++EF     M+ ALD+LD TE++GR +RL ++K
Sbjct:  124 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDK 182
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 71.2478 bits (173), Expect = 4.972e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            QDLKD+ R  GE+TY +AHK R  EG++EF     M+ ALD+LD TE++GR +RL ++K
Sbjct:  124 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDK 182
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|1168968|sp|Q09167.1|SRSF5_RAT (RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Insulin-induced growth response protein CL-4; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5 >gi|410516929|sp|O35326.2|SRSF5_MOUSE RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5)

HSP 1 Score: 67.3958 bits (163), Expect = 7.977e-13
Identity = 25/64 (39.06%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQ 83
            + S +  QDLKD+ R  GE+T+ +AH+P++ EG+VEF     ++NA+++L   E++GR+++L +
Sbjct:  115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|3929378|sp|Q13243.1|SRSF5_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5)

HSP 1 Score: 67.3958 bits (163), Expect = 8.201e-13
Identity = 25/64 (39.06%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQ 83
            + S +  QDLKD+ R  GE+T+ +AH+P++ EG+VEF     ++NA+++L   E++GR+++L +
Sbjct:  115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
[Close]
BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Match: gi|26399937|sp|P78814.2|SRP2_SCHPO (RecName: Full=Pre-mRNA-splicing factor srp2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.176e-7
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            QDLKD  R  GE T+T+AH+   G G+VEF   + M NAL  L+   + G+ + L ++
Sbjct:  112 QDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|225718298|gb|ACO14995.1| (Splicing factor, arginine/serine-rich 4 [Caligus clemensi])

HSP 1 Score: 103.605 bits (257), Expect = 2.504e-24
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            QDLKDYFR CG+ITYTNAHKPR  EG+VEFGD++ MENALDRLD+TEL GRR+RL +E
Sbjct:  129 QDLKDYFRSCGDITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTELAGRRIRLYEE 186
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|225714068|gb|ACO12880.1| (Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis] >gi|290462833|gb|ADD24464.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis])

HSP 1 Score: 103.219 bits (256), Expect = 4.177e-24
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            QDLKDYFR CGEITYTNAHKPR  EG+VEFGD++ MENALDRLD+T+L GRR++L +E
Sbjct:  125 QDLKDYFRSCGEITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTDLGGRRIKLYEE 182
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|225712990|gb|ACO12341.1| (Serine-arginine protein 55 [Lepeophtheirus salmonis] >gi|290462763|gb|ADD24429.1| Serine-arginine protein 55 [Lepeophtheirus salmonis] >gi|290562097|gb|ADD38445.1| Serine-arginine protein 55 [Lepeophtheirus salmonis])

HSP 1 Score: 90.5077 bits (223), Expect = 3.970e-19
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEKRKDRSRS 92
            QDLKDYFR  GEITYTNAH PR GEG+VEF   +G++ A+D  D  ELDGRRL++ +E R+ RS S
Sbjct:  134 QDLKDYFRAAGEITYTNAHTPRQGEGVVEFASSRGLDYAIDHQDELELDGRRLKVFEEHRRSRSGS 199
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|225709420|gb|ACO10556.1| (Serine-arginine protein 55 [Caligus rogercresseyi])

HSP 1 Score: 86.2705 bits (212), Expect = 1.302e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0 
Query:   27 QDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            QDLKDYFR  G+ITYTNAH PR GEGIVEF   KG++ ALD  +  ELDGRRL++ +E
Sbjct:  126 QDLKDYFRAAGDITYTNAHTPRQGEGIVEFASSKGLDYALDHQNELELDGRRLKVYEE 183
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|241574285|ref|XP_002403076.1| (alternative splicing factor SRp55/B52/SRp75, putative [Ixodes scapularis] >gi|215502149|gb|EEC11643.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes scapularis])

HSP 1 Score: 86.2705 bits (212), Expect = 2.364e-17
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEKR 86
            + SH+  QDLKDY R  GE+TY +AHK R  EG+VEF +   M+NA+ +LDNT+L GRR+RL +EK+
Sbjct:  120 LSSHVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLSGRRIRLYEEKK 186
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|241574282|ref|XP_002403075.1| (alternative splicing factor SRp55/B52/SRp75, putative [Ixodes scapularis] >gi|215502148|gb|EEC11642.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes scapularis])

HSP 1 Score: 84.7297 bits (208), Expect = 2.104e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:   22 SHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEK 85
            S +  QDLKDY R  GE+TY +AHK R  EG+VEF     M+NALD+LDNT+L GRR+RL +EK
Sbjct:  112 SRVSWQDLKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRIRLVEEK 175
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|909568098|ref|XP_013139488.1| (PREDICTED: serine-arginine protein 55 isoform X3 [Papilio polytes])

HSP 1 Score: 84.3445 bits (207), Expect = 3.032e-16
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEKRKDRSRSRSDSRSRSRSRSRSRSRSRSRSAS-------------RSRTPASRSRSRSRSPPANGAAERERSRSRSRSRSRSPSRPKEDE 161
            + S +  QDLKDY R  GE+TY +AHK    EG+VEF     M  A+++LD TEL+GRR+RL +++R  R R+RS S          R       +              ++++P ++SRSRSRS      AE+  +  RSRSRS+    PK +E
Sbjct:  131 LSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRIRLVEDRRSSRRRTRSSSSRSRSRSRDRRRSRSRSRSRRSSRSRSRSKSRPKTKSPVAKSRSRSRSKCVVTCAEQNLNTERSRSRSKEAQSPKREE 285
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|443724659|gb|ELU12563.1| (hypothetical protein CAPTEDRAFT_175470 [Capitella teleta])

HSP 1 Score: 83.5741 bits (205), Expect = 3.975e-16
Identity = 67/167 (40.12%), Postives = 88/167 (52.69%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQEKRKDRSRSRS---------------------------------DSRSRSRSRSRSRSRSRSRSASRSRTPASRSRSRSRSPPANGAAERERSRSRSRSRSRS 153
            + S +  QDLKDY R  GE+TY +AHK    EGIVEF  R  M+ AL++LD+TE++GRR+RL +++ + R RS S                                 + +SRS SR RS SR RS+S  RS    SR RS+SR        +R  SR RS+SR RS
Sbjct:  125 LSSRVSWQDLKDYMRQAGEVTYADAHKQHKNEGIVEFSSRADMKTALEKLDDTEINGRRIRLVEDRSRSRRRSHSRSHSRGRYRSRSPRSRSRSRRRSVSRSRSPVHRNGKSRSLSRDRSVSRGRSKSMDRS---VSRDRSKSR--------DRSVSRDRSKSRDRS 280
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|926625325|ref|XP_013778156.1| (serine/arginine-rich splicing factor 4-like isoform X4 [Limulus polyphemus])

HSP 1 Score: 82.4185 bits (202), Expect = 5.622e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            + S +  QDLKDY R  GE+TY +AHK R  EG+VEF     M+NALD+LDNTEL+GR++RLS++
Sbjct:  111 LSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDMKNALDKLDNTELNGRKVRLSED 175
[Close]
BLAST of alternative splicing factor srp55 b52 vs. nr
Match: gi|926625323|ref|XP_013778155.1| (serine/arginine-rich splicing factor 6-like isoform X3 [Limulus polyphemus])

HSP 1 Score: 82.4185 bits (202), Expect = 5.794e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   20 IPSHLDRQDLKDYFRPCGEITYTNAHKPRMGEGIVEFGDRKGMENALDRLDNTELDGRRLRLSQE 84
            + S +  QDLKDY R  GE+TY +AHK R  EG+VEF     M+NALD+LDNTEL+GR++RLS++
Sbjct:  116 LSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDMKNALDKLDNTELNGRKVRLSED 180
The following BLAST results are available for this feature:
BLAST of alternative splicing factor srp55 b52 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000026054.755e-2875.86supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 g... [more]
EMLSAG000000054756.118e-1454.55supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 ge... [more]
EMLSAG000000093597.055e-1040.00supercontig:LSalAtl2s:LSalAtl2s599:215116:228556:-... [more]
EMLSAG000000071464.467e-742.66supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1... [more]
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BLAST of alternative splicing factor srp55 b52 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE2.183e-1552.54RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|78099805|sp|P26686.4|SRR55_DROME3.266e-1549.23RecName: Full=Serine-arginine protein 55; Short=SR... [more]
gi|20981726|sp|Q08170.2|SRSF4_HUMAN5.277e-1552.54RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|123796822|sp|Q3TWW8.1|SRSF6_MOUSE3.510e-1452.54RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|20981728|sp|Q13247.2|SRSF6_HUMAN4.019e-1452.54RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN4.972e-1452.54RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|1168968|sp|Q09167.1|SRSF5_RAT7.977e-1339.06RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|3929378|sp|Q13243.1|SRSF5_HUMAN8.201e-1339.06RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|26399937|sp|P78814.2|SRP2_SCHPO5.176e-741.38RecName: Full=Pre-mRNA-splicing factor srp2[more]
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BLAST of alternative splicing factor srp55 b52 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225718298|gb|ACO14995.1|2.504e-2477.59Splicing factor, arginine/serine-rich 4 [Caligus c... [more]
gi|225714068|gb|ACO12880.1|4.177e-2475.86Splicing factor, arginine/serine-rich 4 [Lepeophth... [more]
gi|225712990|gb|ACO12341.1|3.970e-1962.12Serine-arginine protein 55 [Lepeophtheirus salmoni... [more]
gi|225709420|gb|ACO10556.1|1.302e-1765.52Serine-arginine protein 55 [Caligus rogercresseyi][more]
gi|241574285|ref|XP_002403076.1|2.364e-1755.22alternative splicing factor SRp55/B52/SRp75, putat... [more]
gi|241574282|ref|XP_002403075.1|2.104e-1659.38alternative splicing factor SRp55/B52/SRp75, putat... [more]
gi|909568098|ref|XP_013139488.1|3.032e-1637.42PREDICTED: serine-arginine protein 55 isoform X3 [... [more]
gi|443724659|gb|ELU12563.1|3.975e-1640.12hypothetical protein CAPTEDRAFT_175470 [Capitella ... [more]
gi|926625325|ref|XP_013778156.1|5.622e-1656.92serine/arginine-rich splicing factor 4-like isofor... [more]
gi|926625323|ref|XP_013778155.1|5.794e-1656.92serine/arginine-rich splicing factor 6-like isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2813_size12200supercontigscaffold2813_size12200:11223..12218 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold2813_size12200-snap-gene-0.6-mRNA-1maker-scaffold2813_size12200-snap-gene-0.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2813_size12200:11223..12218-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold2813_size12200-snap-gene-0.6 ID=maker-scaffold2813_size12200-snap-gene-0.6|Name=alternative splicing factor srp55 b52|organism=Tigriopus kingsejongensis|type=gene|length=996bp|location=Sequence derived from alignment at scaffold2813_size12200:11223..12218- (Tigriopus kingsejongensis)
AAATGATCGAATAGTCAAACTCTTGAAAAAATGCGCCAGGCCAGGAGGGT
TTTGCTTGGCCTCCGGTGGATCCGGTCTGATCCCGAGCCACCTTGACAGG
CAGGTAAACATCATACTCATCTCTCTCACTCTGTTTCTGACCCACCCGTA
ACACCCCCCCACCCATCTATATCCCCGCCCCAGCTCAACTCAGTTTCCGC
CCCCCATCTGCTCCCTGCGGCCATGCCACTCGCCCCATTCCCAACCACAG
GGCTGGGTCCACAGCCCGAATCTTTTGGCCCCGACCCGCTTGAGAGCGGC
CTCTCCCATTTCCCCGGGGTCGCCGCCTGTGGTGGTGATCGACCTCGTTC
CTGCCGTTGAGATGTCCACGCGATCATAACTGCCATGTATTCACGGCGGT
CCGACTAACCGAGCGCTTCGCATATTTCAGGATTTGAAAGACTACTTCCG
CCCTTGCGGCGAGATCACCTACACCAACGCCCACAAGCCCAGGATGGGCG
AGGGGTAAGTGCCCGTGGTGCCACGTCCACGTACCGTCTGTGTCATGCCC
CATTGTCTCTCTAGTATCGTCGAATTTGGCGATCGCAAGGGTATGGAAAA
TGCCCTCGACCGACTGGACAACACCGAATTAGACGGACGGCGTCTGCGTC
TGAGCCAAGAGAAGAGGAAAGATCGCTCCCGGTCGCGATCCGACTCCAGA
TCCCGGAGCCGTAGTCGAAGCCGTAGCCGCTCCCGATCTCGATCCAGGTA
AGCCATCCGTCCCACCTCGGGACTTCTACCACTTCTACCCCGACATACCT
TGAACCATGTGCTATAACGGACTTGCTTCATCTTTGATAGGTCTGCCTCG
CGATCCCGCACGCCCGCATCGAGGAGCCGATCCCGCTCTCGATCGCCACC
GGCCAACGGTGCGGCCGAACGGGAGCGATCTCGATCGCGATCCCGCTCCA
GGAGCCGCTCACCCAGCCGACCCAAGGAAGACGAAAACTGAAATAA
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Synonyms
The feature 'alternative splicing factor srp55 b52' has the following synonyms
Synonym
Tk01099
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