GI24168, maker-scaffold282_size228295-snap-gene-0.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of GI24168 vs. L. salmonis genes
Match: EMLSAG00000003443 (supercontig:LSalAtl2s:LSalAtl2s188:634817:638620:-1 gene:EMLSAG00000003443 transcript:EMLSAT00000003443 description:"maker-LSalAtl2s188-augustus-gene-6.42") HSP 1 Score: 178.718 bits (452), Expect = 1.754e-51 Identity = 78/150 (52.00%), Postives = 115/150 (76.67%), Query Frame = 0 Query: 1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE 150 L++ALLDL+ L+P +PSY+ P++ +LF++FS + +WR+ ++++L + ++H+Q L ++FHRLYGMFPCNFL +LRS Y+ + F +I+PML TVR+HPLLV+HSR+QEK RWK++ELHD+L ESSRY+LI QE ED +E Sbjct: 132 LLTALLDLICLLPAIPSYITPFIQDLFEIFSHLTAWRHHHLHNLHPVHQIHLQSILLSYFHRLYGMFPCNFLHFLRSHYA----NQTAFFKSSIQPMLVTVRLHPLLVSHSREQEKSLSRWKRMELHDVLTESSRYALIPQEFNNEDVLE 277
BLAST of GI24168 vs. SwissProt
Match: gi|81868102|sp|Q9EP53.1|TSC1_MOUSE (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein homolog) HSP 1 Score: 137.502 bits (345), Expect = 1.229e-35 Identity = 75/213 (35.21%), Postives = 118/213 (55.40%), Query Frame = 0 Query: 9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED--QIEPLFSPMNPYGTLSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGT--TGSKGPTTTLVQSPVPVEAS 217 + ++P++P +L + FD+F R++SW + + ++ VH+ ++A FHRLYGM+PCNF+S+LRS YS K+N F ++PM+ VR+HP LVT S+D E P RWK LE HD+++E ++ SL E + ED + S PY + +P + S + R+ + SPPG P+T L+ P P++AS Sbjct: 137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENVETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKTLETHDVVIECAKISLDPTEASYEDGYSVSHQLSACFPYRSADVTTSPYVDTQNSYGGSTSTPSSSSRLMLFSPPGQLPQSLSSPSTRLL--PEPLQAS 345
BLAST of GI24168 vs. SwissProt
Match: gi|9297077|sp|Q92574.2|TSC1_HUMAN (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein) HSP 1 Score: 135.191 bits (339), Expect = 7.916e-35 Identity = 58/139 (41.73%), Postives = 91/139 (65.47%), Query Frame = 0 Query: 9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED 147 + ++P++P +L + FD+F R++SW + + ++ VH+ ++A FHRLYGM+PCNF+S+LRS YS K+N F ++PM+ VR+HP LVT S+D E P RWK+LE HD+++E ++ SL E + ED Sbjct: 137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHDVVIECAKISLDPTEASYED 273
BLAST of GI24168 vs. SwissProt
Match: gi|9297064|sp|Q9Z136.1|TSC1_RAT (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein homolog) HSP 1 Score: 134.035 bits (336), Expect = 1.739e-34 Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 0 Query: 9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED 147 + ++P++P +L + FD+F R++SW + + ++ VH+ ++A FHRLYGM+PCNF+S+LRS YS K+N F ++PM+ VR+HP LVT S+D E P RWK LE HD+++E ++ SL E + ED Sbjct: 137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENVETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKTLETHDVVIECAKISLDPTEASYED 273
BLAST of GI24168 vs. nr
Match: gi|1357742173|ref|XP_024115924.1| (hamartin-like isoform X2 [Oryzias melastigma]) HSP 1 Score: 163.31 bits (412), Expect = 3.666e-42 Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 0 Query: 1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE--------PLFSPMNPYGTLSGMP-----------------TPDIHELASVVNH--DPLWTPGKRVDVSSPP----GTTGSKGPTTTL--VQSPVPV 214 L++ +L L+ L+P++P ++++ FDVF R+ASW Y+NI LP +Q VH+ G+++ FHRLYGMFPCNF+SYLR YS K+N F ++PML VR+HP LVT ++D E P RW++ E+HDI++E SR SL E + E++I P+ SP+ P+ LS P +H L+S D W+P +S+PP G T S T ++ V+ P+ V Sbjct: 130 LITGVLVLITLLPMIPQAGKQHIYDFFDVFGRLASWSYKNIGHLPVVQLVHLHAGVYSLFHRLYGMFPCNFISYLRLHYS--MKENLDTFQEVVKPMLEHVRVHPELVTGTQDYELDPSRWRRYEVHDIIIECSRVSLDPLESSCEEEIHSSASLRPPPVSSPL-PHLDLSSCSPFTVAVSSSEVSASLSGRPPLHTLSSSCTQLDDVTWSPSSHCGLSTPPPEPAGLTPSLSRTASVSGVKCPIVV 373
BLAST of GI24168 vs. nr
Match: gi|1357742171|ref|XP_024115923.1| (hamartin-like isoform X1 [Oryzias melastigma]) HSP 1 Score: 163.31 bits (412), Expect = 3.704e-42 Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 0 Query: 1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE--------PLFSPMNPYGTLSGMP-----------------TPDIHELASVVNH--DPLWTPGKRVDVSSPP----GTTGSKGPTTTL--VQSPVPV 214 L++ +L L+ L+P++P ++++ FDVF R+ASW Y+NI LP +Q VH+ G+++ FHRLYGMFPCNF+SYLR YS K+N F ++PML VR+HP LVT ++D E P RW++ E+HDI++E SR SL E + E++I P+ SP+ P+ LS P +H L+S D W+P +S+PP G T S T ++ V+ P+ V Sbjct: 130 LITGVLVLITLLPMIPQAGKQHIYDFFDVFGRLASWSYKNIGHLPVVQLVHLHAGVYSLFHRLYGMFPCNFISYLRLHYS--MKENLDTFQEVVKPMLEHVRVHPELVTGTQDYELDPSRWRRYEVHDIIIECSRVSLDPLESSCEEEIHSSASLRPPPVSSPL-PHLDLSSCSPFTVAVSSSEVSASLSGRPPLHTLSSSCTQLDDVTWSPSSHCGLSTPPPEPAGLTPSLSRTASVSGVKCPIVV 373
BLAST of GI24168 vs. nr
Match: gi|968059252|ref|XP_001998803.2| (uncharacterized protein Dmoj_GI24168 [Drosophila mojavensis] >gi|946588243|gb|EDW14264.2| uncharacterized protein Dmoj_GI24168 [Drosophila mojavensis]) HSP 1 Score: 163.31 bits (412), Expect = 3.752e-42 Identity = 105/273 (38.46%), Postives = 149/273 (54.58%), Query Frame = 0 Query: 1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL--ISQEGTQED------QIEPLFSPM---NPYGT-------------LSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGTTGSKGPTTTLVQSPVPVEASQSSSEAPRHGLTLSMNKPDMDSPPEAAIEATP 249 LMSALL ++ L+PI+P+ + +L++LF+VF +ASW++QN+N LP + VH+Q+GL FHRLYGM+PCNFLSYL S++ KD +F HTI+P+L TVR+HP+L+T + + E MRWK++E HD+++E + SL + + T ED P FS M YG LS P + ++ P+W+P + P T S P T P P SS T + SPPEAA+EATP Sbjct: 150 LMSALLCIITLLPIIPNSVPNFLNDLFEVFGHLASWKFQNVNKLPDDKVVHLQLGLQMLFHRLYGMYPCNFLSYL-SEF--IKKDKGSIFQHTIKPLLDTVRVHPMLLTSTTETEVSNMRWKEMEPHDVVMECAHLSLPVLHPDSTHEDISSVYPCSTPSFSRMTSTTSYGEQHNNVSNQLNNQHLSAAPLRRFEPSIADNSNTPIWSPHNEL----APATASSAMPLT-----PTPFIVPPSS--------TAQLLVATGSSPPEAAVEATP 402
BLAST of GI24168 vs. nr
Match: gi|1062652680|ref|XP_017967040.1| (PREDICTED: hamartin [Drosophila navojoa]) HSP 1 Score: 163.31 bits (412), Expect = 4.536e-42 Identity = 103/273 (37.73%), Postives = 149/273 (54.58%), Query Frame = 0 Query: 1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL--ISQEGTQED------QIEPLFSPM---NPYGT-------------LSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGTTGSKGPTTTLVQSPVPVEASQSSSEAPRHGLTLSMNKPDMDSPPEAAIEATP 249 LMSALL ++ L+PI+P+ + +L++LF+VF +ASW++QN+N LP + VH+Q+GL FHRLYGM+PCNFL+YL S++ KD +F HTI+P+L TVR+HP+L+T + + E MRWK++E HD+++E + SL + + T ED P FS M YG L+ P + ++ P+W+P + P T S P T P P SS T + SPPEAA+EATP Sbjct: 139 LMSALLCIITLLPIIPNSVPNFLNDLFEVFGHLASWKFQNVNKLPDDKVVHLQLGLQMLFHRLYGMYPCNFLNYL-SEF--IKKDKGSIFQHTIKPLLDTVRVHPMLLTATTETEVSNMRWKEMEPHDVVMECAHLSLPVLHPDSTHEDISTAYPCSTPSFSRMTSTTSYGEQHNNFSNQLNNQHLTAAPLRRFESSIADTSNTPIWSPHNEL----APATASSAMPLT-----PTPFIVPPSS--------TAQLLVATGSSPPEAAVEATP 391
BLAST of GI24168 vs. nr
Match: gi|321477502|gb|EFX88461.1| (tuber sclerosis 1-like protein, partial [Daphnia pulex]) HSP 1 Score: 151.754 bits (382), Expect = 2.321e-41 Identity = 68/129 (52.71%), Postives = 97/129 (75.19%), Query Frame = 0 Query: 10 ALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL 138 AL+PI+P+ + L+E+F+ F+R+A+W Y N P++ +H+QI L+A FHRLYGM+PCNFLSYLR YS +DN +F+HT++PM+ TVRMHPLLVT S+D E RWK++ +HDI+ E ++YSL Sbjct: 136 ALIPIIPNLESSILNEIFESFTRLAAWNYSNQPKQPEVYVLHLQIALYALFHRLYGMYPCNFLSYLRQHYSL--RDNLPIFSHTVKPMVETVRMHPLLVTASKDIEIGTARWKQMSVHDIVTECAKYSL 262 The following BLAST results are available for this feature:
BLAST of GI24168 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of GI24168 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of GI24168 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold282_size228295:53218..54254+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold282_size228295-snap-gene-0.12 ID=maker-scaffold282_size228295-snap-gene-0.12|Name=GI24168|organism=Tigriopus kingsejongensis|type=gene|length=1037bp|location=Sequence derived from alignment at scaffold282_size228295:53218..54254+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'GI24168' has the following synonyms
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