GI24168, maker-scaffold282_size228295-snap-gene-0.12 (gene) Tigriopus kingsejongensis

Overview
NameGI24168
Unique Namemaker-scaffold282_size228295-snap-gene-0.12
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of GI24168 vs. L. salmonis genes
Match: EMLSAG00000003443 (supercontig:LSalAtl2s:LSalAtl2s188:634817:638620:-1 gene:EMLSAG00000003443 transcript:EMLSAT00000003443 description:"maker-LSalAtl2s188-augustus-gene-6.42")

HSP 1 Score: 178.718 bits (452), Expect = 1.754e-51
Identity = 78/150 (52.00%), Postives = 115/150 (76.67%), Query Frame = 0
Query:    1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE 150
            L++ALLDL+ L+P +PSY+ P++ +LF++FS + +WR+ ++++L  + ++H+Q  L ++FHRLYGMFPCNFL +LRS Y+    +    F  +I+PML TVR+HPLLV+HSR+QEK   RWK++ELHD+L ESSRY+LI QE   ED +E
Sbjct:  132 LLTALLDLICLLPAIPSYITPFIQDLFEIFSHLTAWRHHHLHNLHPVHQIHLQSILLSYFHRLYGMFPCNFLHFLRSHYA----NQTAFFKSSIQPMLVTVRLHPLLVSHSREQEKSLSRWKRMELHDVLTESSRYALIPQEFNNEDVLE 277          
BLAST of GI24168 vs. SwissProt
Match: gi|81868102|sp|Q9EP53.1|TSC1_MOUSE (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein homolog)

HSP 1 Score: 137.502 bits (345), Expect = 1.229e-35
Identity = 75/213 (35.21%), Postives = 118/213 (55.40%), Query Frame = 0
Query:    9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED--QIEPLFSPMNPYGTLSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGT--TGSKGPTTTLVQSPVPVEAS 217
            + ++P++P     +L + FD+F R++SW  +    + ++  VH+   ++A FHRLYGM+PCNF+S+LRS YS   K+N   F   ++PM+  VR+HP LVT S+D E  P RWK LE HD+++E ++ SL   E + ED   +    S   PY +     +P +    S        +   R+ + SPPG        P+T L+  P P++AS
Sbjct:  137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENVETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKTLETHDVVIECAKISLDPTEASYEDGYSVSHQLSACFPYRSADVTTSPYVDTQNSYGGSTSTPSSSSRLMLFSPPGQLPQSLSSPSTRLL--PEPLQAS 345          
BLAST of GI24168 vs. SwissProt
Match: gi|9297077|sp|Q92574.2|TSC1_HUMAN (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein)

HSP 1 Score: 135.191 bits (339), Expect = 7.916e-35
Identity = 58/139 (41.73%), Postives = 91/139 (65.47%), Query Frame = 0
Query:    9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED 147
            + ++P++P     +L + FD+F R++SW  +    + ++  VH+   ++A FHRLYGM+PCNF+S+LRS YS   K+N   F   ++PM+  VR+HP LVT S+D E  P RWK+LE HD+++E ++ SL   E + ED
Sbjct:  137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHDVVIECAKISLDPTEASYED 273          
BLAST of GI24168 vs. SwissProt
Match: gi|9297064|sp|Q9Z136.1|TSC1_RAT (RecName: Full=Hamartin; AltName: Full=Tuberous sclerosis 1 protein homolog)

HSP 1 Score: 134.035 bits (336), Expect = 1.739e-34
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    9 LALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQED 147
            + ++P++P     +L + FD+F R++SW  +    + ++  VH+   ++A FHRLYGM+PCNF+S+LRS YS   K+N   F   ++PM+  VR+HP LVT S+D E  P RWK LE HD+++E ++ SL   E + ED
Sbjct:  137 ITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYS--MKENVETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKTLETHDVVIECAKISLDPTEASYED 273          
BLAST of GI24168 vs. nr
Match: gi|1357742173|ref|XP_024115924.1| (hamartin-like isoform X2 [Oryzias melastigma])

HSP 1 Score: 163.31 bits (412), Expect = 3.666e-42
Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 0
Query:    1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE--------PLFSPMNPYGTLSGMP-----------------TPDIHELASVVNH--DPLWTPGKRVDVSSPP----GTTGSKGPTTTL--VQSPVPV 214
            L++ +L L+ L+P++P     ++++ FDVF R+ASW Y+NI  LP +Q VH+  G+++ FHRLYGMFPCNF+SYLR  YS   K+N   F   ++PML  VR+HP LVT ++D E  P RW++ E+HDI++E SR SL   E + E++I         P+ SP+ P+  LS                     P +H L+S      D  W+P     +S+PP    G T S   T ++  V+ P+ V
Sbjct:  130 LITGVLVLITLLPMIPQAGKQHIYDFFDVFGRLASWSYKNIGHLPVVQLVHLHAGVYSLFHRLYGMFPCNFISYLRLHYS--MKENLDTFQEVVKPMLEHVRVHPELVTGTQDYELDPSRWRRYEVHDIIIECSRVSLDPLESSCEEEIHSSASLRPPPVSSPL-PHLDLSSCSPFTVAVSSSEVSASLSGRPPLHTLSSSCTQLDDVTWSPSSHCGLSTPPPEPAGLTPSLSRTASVSGVKCPIVV 373          
BLAST of GI24168 vs. nr
Match: gi|1357742171|ref|XP_024115923.1| (hamartin-like isoform X1 [Oryzias melastigma])

HSP 1 Score: 163.31 bits (412), Expect = 3.704e-42
Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 0
Query:    1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSLISQEGTQEDQIE--------PLFSPMNPYGTLSGMP-----------------TPDIHELASVVNH--DPLWTPGKRVDVSSPP----GTTGSKGPTTTL--VQSPVPV 214
            L++ +L L+ L+P++P     ++++ FDVF R+ASW Y+NI  LP +Q VH+  G+++ FHRLYGMFPCNF+SYLR  YS   K+N   F   ++PML  VR+HP LVT ++D E  P RW++ E+HDI++E SR SL   E + E++I         P+ SP+ P+  LS                     P +H L+S      D  W+P     +S+PP    G T S   T ++  V+ P+ V
Sbjct:  130 LITGVLVLITLLPMIPQAGKQHIYDFFDVFGRLASWSYKNIGHLPVVQLVHLHAGVYSLFHRLYGMFPCNFISYLRLHYS--MKENLDTFQEVVKPMLEHVRVHPELVTGTQDYELDPSRWRRYEVHDIIIECSRVSLDPLESSCEEEIHSSASLRPPPVSSPL-PHLDLSSCSPFTVAVSSSEVSASLSGRPPLHTLSSSCTQLDDVTWSPSSHCGLSTPPPEPAGLTPSLSRTASVSGVKCPIVV 373          
BLAST of GI24168 vs. nr
Match: gi|968059252|ref|XP_001998803.2| (uncharacterized protein Dmoj_GI24168 [Drosophila mojavensis] >gi|946588243|gb|EDW14264.2| uncharacterized protein Dmoj_GI24168 [Drosophila mojavensis])

HSP 1 Score: 163.31 bits (412), Expect = 3.752e-42
Identity = 105/273 (38.46%), Postives = 149/273 (54.58%), Query Frame = 0
Query:    1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL--ISQEGTQED------QIEPLFSPM---NPYGT-------------LSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGTTGSKGPTTTLVQSPVPVEASQSSSEAPRHGLTLSMNKPDMDSPPEAAIEATP 249
            LMSALL ++ L+PI+P+ +  +L++LF+VF  +ASW++QN+N LP  + VH+Q+GL   FHRLYGM+PCNFLSYL S++    KD   +F HTI+P+L TVR+HP+L+T + + E   MRWK++E HD+++E +  SL  +  + T ED         P FS M     YG              LS  P        +  ++ P+W+P   +     P T  S  P T     P P     SS        T  +      SPPEAA+EATP
Sbjct:  150 LMSALLCIITLLPIIPNSVPNFLNDLFEVFGHLASWKFQNVNKLPDDKVVHLQLGLQMLFHRLYGMYPCNFLSYL-SEF--IKKDKGSIFQHTIKPLLDTVRVHPMLLTSTTETEVSNMRWKEMEPHDVVMECAHLSLPVLHPDSTHEDISSVYPCSTPSFSRMTSTTSYGEQHNNVSNQLNNQHLSAAPLRRFEPSIADNSNTPIWSPHNEL----APATASSAMPLT-----PTPFIVPPSS--------TAQLLVATGSSPPEAAVEATP 402          
BLAST of GI24168 vs. nr
Match: gi|1062652680|ref|XP_017967040.1| (PREDICTED: hamartin [Drosophila navojoa])

HSP 1 Score: 163.31 bits (412), Expect = 4.536e-42
Identity = 103/273 (37.73%), Postives = 149/273 (54.58%), Query Frame = 0
Query:    1 LMSALLDLLALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL--ISQEGTQED------QIEPLFSPM---NPYGT-------------LSGMPTPDIHELASVVNHDPLWTPGKRVDVSSPPGTTGSKGPTTTLVQSPVPVEASQSSSEAPRHGLTLSMNKPDMDSPPEAAIEATP 249
            LMSALL ++ L+PI+P+ +  +L++LF+VF  +ASW++QN+N LP  + VH+Q+GL   FHRLYGM+PCNFL+YL S++    KD   +F HTI+P+L TVR+HP+L+T + + E   MRWK++E HD+++E +  SL  +  + T ED         P FS M     YG              L+  P        +  ++ P+W+P   +     P T  S  P T     P P     SS        T  +      SPPEAA+EATP
Sbjct:  139 LMSALLCIITLLPIIPNSVPNFLNDLFEVFGHLASWKFQNVNKLPDDKVVHLQLGLQMLFHRLYGMYPCNFLNYL-SEF--IKKDKGSIFQHTIKPLLDTVRVHPMLLTATTETEVSNMRWKEMEPHDVVMECAHLSLPVLHPDSTHEDISTAYPCSTPSFSRMTSTTSYGEQHNNFSNQLNNQHLTAAPLRRFESSIADTSNTPIWSPHNEL----APATASSAMPLT-----PTPFIVPPSS--------TAQLLVATGSSPPEAAVEATP 391          
BLAST of GI24168 vs. nr
Match: gi|321477502|gb|EFX88461.1| (tuber sclerosis 1-like protein, partial [Daphnia pulex])

HSP 1 Score: 151.754 bits (382), Expect = 2.321e-41
Identity = 68/129 (52.71%), Postives = 97/129 (75.19%), Query Frame = 0
Query:   10 ALMPIVPSYMAPYLHELFDVFSRIASWRYQNINDLPQIQKVHVQIGLFAFFHRLYGMFPCNFLSYLRSQYSETHKDNQLVFNHTIRPMLHTVRMHPLLVTHSRDQEKHPMRWKKLELHDILVESSRYSL 138
            AL+PI+P+  +  L+E+F+ F+R+A+W Y N    P++  +H+QI L+A FHRLYGM+PCNFLSYLR  YS   +DN  +F+HT++PM+ TVRMHPLLVT S+D E    RWK++ +HDI+ E ++YSL
Sbjct:  136 ALIPIIPNLESSILNEIFESFTRLAAWNYSNQPKQPEVYVLHLQIALYALFHRLYGMYPCNFLSYLRQHYSL--RDNLPIFSHTVKPMVETVRMHPLLVTASKDIEIGTARWKQMSVHDIVTECAKYSL 262          
The following BLAST results are available for this feature:
BLAST of GI24168 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000034431.754e-5152.00supercontig:LSalAtl2s:LSalAtl2s188:634817:638620:-... [more]
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BLAST of GI24168 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
gi|81868102|sp|Q9EP53.1|TSC1_MOUSE1.229e-3535.21RecName: Full=Hamartin; AltName: Full=Tuberous scl... [more]
gi|9297077|sp|Q92574.2|TSC1_HUMAN7.916e-3541.73RecName: Full=Hamartin; AltName: Full=Tuberous scl... [more]
gi|9297064|sp|Q9Z136.1|TSC1_RAT1.739e-3441.73RecName: Full=Hamartin; AltName: Full=Tuberous scl... [more]
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BLAST of GI24168 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1357742173|ref|XP_024115924.1|3.666e-4238.06hamartin-like isoform X2 [Oryzias melastigma][more]
gi|1357742171|ref|XP_024115923.1|3.704e-4238.06hamartin-like isoform X1 [Oryzias melastigma][more]
gi|968059252|ref|XP_001998803.2|3.752e-4238.46uncharacterized protein Dmoj_GI24168 [Drosophila m... [more]
gi|1062652680|ref|XP_017967040.1|4.536e-4237.73PREDICTED: hamartin [Drosophila navojoa][more]
gi|321477502|gb|EFX88461.1|2.321e-4152.71tuber sclerosis 1-like protein, partial [Daphnia p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold282_size228295supercontigscaffold282_size228295:53218..54254 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold282_size228295-snap-gene-0.12-mRNA-1maker-scaffold282_size228295-snap-gene-0.12-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold282_size228295:53218..54254+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold282_size228295-snap-gene-0.12 ID=maker-scaffold282_size228295-snap-gene-0.12|Name=GI24168|organism=Tigriopus kingsejongensis|type=gene|length=1037bp|location=Sequence derived from alignment at scaffold282_size228295:53218..54254+ (Tigriopus kingsejongensis)
CCGCAAAGCTAGTCCACGAAACCTCTTCGGGTCATCGAATCATCGGGCCT CCATTCCAGCACGAAGATGACCTCGTGATTTTGATGAGCGCTTTGTTGGA TCTCTTGGCCTTGATGCCCATCGTACCCTCGTACATGGCGCCCTATCTGC ACGAGCTCTTCGACGTGTTCAGGTAAGCATTCGGTGAGCCGGTGGCCCGA GCTCAGTTTCATCCGGCCTGGGCTTGGCTTTCCAGTCGCATCGCCTCGTG GCGCTACCAGAACATCAACGACCTGCCTCAGATCCAGAAGGTCCACGTGC AAATCGGACTCTTTGCCTTCTTTCATCGGCTGTATGGCATGTTTCCCTGC AATTTCCTCTCCTACCTGCGCTCCCAATACTCGGAAACGCACAAGGACAA TCAGGTGAGTAGTCTCCAGCCTCGCCGTGCCATTGCCAGCCCTGATCCGG CCCAATCGGGTGGGTGTGCTTTCAGTTGGTGTTCAATCACACGATCCGAC CCATGCTGCACACGGTGCGCATGCATCCACTGCTGGTGACGCACTCCCGA GACCAGGAGAAGCATCCCATGCGCTGGAAGAAATTGGAACTCCACGACAT CTTGGTGGAGTCGAGTCGCTACTCGCTGATATCGCAAGAGGGCACCCAAG AGGATCAAATCGAGCCCCTCTTCTCGCCCATGAACCCCTATGGCACCCTG AGCGGTATGCCCACTCCAGGTAGCGACCCACCCAGCCCGCGTCCCCTGAC CTGACTCGCCCAATACGCAACCCAATCCATTGATCACCTTGGCAGATATC CACGAGTTGGCAAGTGTGGTCAACCATGACCCCCTGTGGACTCCGGGCAA GCGCGTGGATGTGAGCTCACCGCCCGGCACGACGGGCTCGAAAGGCCCCA CCACGACCTTGGTGCAGTCGCCCGTGCCCGTGGAGGCCAGCCAATCGTCT TCCGAAGCGCCCCGTCACGGGCTCACTCTGTCCATGAACAAACCCGACAT GGACTCACCGCCCGAGGCTGCGATCGAGGCCACGCCC
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Synonyms
The feature 'GI24168' has the following synonyms
Synonym
Tk05516
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